ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TEP1_HUMAN (Q99973) Telomerase protein component 1 (Telomerase-a... 33 0.15
2KR106_HUMAN (P60371) Keratin-associated protein 10-6 (Keratin-as... 30 1.6
3KR10A_HUMAN (P60014) Keratin-associated protein 10-10 (Keratin-a... 30 2.1
4SULH_SCHPO (O74377) Probable sulfate permease C3H7.02 29 2.7
5ODD_DROME (P23803) Protein odd-skipped 29 3.6
6KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-a... 29 3.6
7KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-as... 28 4.7
8KR102_HUMAN (P60368) Keratin-associated protein 10-2 (Keratin-as... 28 6.1
9YNK0_YEAST (P50945) Hypothetical 27.0 kDa protein in POL1-RAS2 i... 28 8.0
10C43BP_MOUSE (Q9EQG9) Goodpasture antigen-binding protein (EC 2.7... 28 8.0
11GHR_PIG (P19756) Growth hormone receptor precursor (GH receptor)... 28 8.0
12CUL2_PONPY (Q5RCF3) Cullin-2 (CUL-2) 28 8.0
13CUL2_HUMAN (Q13617) Cullin-2 (CUL-2) 28 8.0
14VEGFD_HUMAN (O43915) Vascular endothelial growth factor D precur... 28 8.0

>TEP1_HUMAN (Q99973) Telomerase protein component 1 (Telomerase-associated|
           protein 1) (Telomerase protein 1) (p240) (p80 telomerase
           homolog)
          Length = 2627

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
 Frame = +2

Query: 26  CHLVVSNPSIQILMHVRIMQNHALATKQQLLAPQHRVW-----------QELDSAGYLTK 172
           CHL       Q+ M +RI   +    +++L   + R W           Q L++A  L+ 
Sbjct: 612 CHLSRQ----QLRMAMRIPVLYEQLKREKLRVHKARQWKYDGEMLNRYRQALETAVNLSV 667

Query: 173 KCSLPIIPSRTPTLLPLDLLFEAMCPPSRHPEG 271
           K SLP++P RT  +   D   + +CP S +P+G
Sbjct: 668 KHSLPLLPGRTVLVYLTDANADRLCPKS-NPQG 699



to top

>KR106_HUMAN (P60371) Keratin-associated protein 10-6 (Keratin-associated|
           protein 10.6) (High sulfur keratin-associated protein
           10.6) (Keratin-associated protein 18-6)
           (Keratin-associated protein 18.6)
          Length = 365

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 156 AESSSCQTRCCGANSCCFVARAWFCMILTCISIC 55
           A +SSCQ  CC   SC  +     C    C S+C
Sbjct: 325 ASASSCQPSCCRTASCVSLLCRPMCSRPACYSLC 358



 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
 Frame = -3

Query: 153 ESSSCQTRCCGANSC---CFV---ARAWFCMILTCISIC 55
           + SSCQ  CC ++ C   C V    +   C  + C+S+C
Sbjct: 91  QQSSCQLACCASSPCQQACCVPVCCKTVCCKPVCCVSVC 129



to top

>KR10A_HUMAN (P60014) Keratin-associated protein 10-10 (Keratin-associated|
           protein 10.10) (High sulfur keratin-associated protein
           10.10) (Keratin-associated protein 18-10)
           (Keratin-associated protein 18.10)
          Length = 251

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 156 AESSSCQTRCCGANSCCFVARAWFCMILTCISIC 55
           A +SSCQ  CC   SC  +     C    C S+C
Sbjct: 211 ASASSCQPSCCRTASCVSLLCRPVCSRPACYSLC 244



to top

>SULH_SCHPO (O74377) Probable sulfate permease C3H7.02|
          Length = 877

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +1

Query: 25  LSPCGVKSVYTNTYACQDHAKPCPSYKTAAIGATAPRLAGARLCWL 162
           + P  V S+ T+       AK  P+Y  A IG T   LAGA  C L
Sbjct: 188 IGPVAVMSLVTSKVIANVQAKD-PNYDAAQIGTTLALLAGAITCGL 232



to top

>ODD_DROME (P23803) Protein odd-skipped|
          Length = 392

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 29  HLVVSNPSIQILMHVRIMQNHALATKQQLLAPQHRVWQEL 148
           H  +S  ++   +H+R M ++    +QQ    QHR+W ++
Sbjct: 61  HPAISEEAVATQLHMRHMAHYQQQQQQQQQQQQHRLWLQM 100



to top

>KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-associated|
           protein 10.11) (High sulfur keratin-associated protein
           10.11) (Keratin-associated protein 18-11)
           (Keratin-associated protein 18.11)
          Length = 298

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
 Frame = -3

Query: 153 ESSSCQTRCCGANS----CC--FVARAWFCMILTCISIC 55
           + SSCQ  CC ++S    CC     +  +C  + C+ +C
Sbjct: 170 QQSSCQPACCTSSSYQQACCVPVCCKTVYCKPICCVPVC 208



 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -3

Query: 147 SSCQTRCCGANSC---CFVARAWFCMILTCISIC 55
           SSCQ  CC ++SC   C V     C  + C+S C
Sbjct: 130 SSCQPACCASSSCQPACCVPVC--CKPVCCVSTC 161



 Score = 27.7 bits (60), Expect = 8.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 156 AESSSCQTRCCGANSCCFVARAWFCMILTCISIC 55
           A +SSCQ+ CC   SC  +        L C S+C
Sbjct: 258 APTSSCQSSCCCPASCVSLLCRPASSRLACYSLC 291



to top

>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated|
           protein 10.8) (High sulfur keratin-associated protein
           10.8) (Keratin-associated protein 18-8)
           (Keratin-associated protein 18.8)
          Length = 259

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = -3

Query: 153 ESSSCQTRCCGANSC---CFV---ARAWFCMILTCISIC 55
           + SSCQ  CC ++ C   C V    ++  C  + C+SIC
Sbjct: 100 QQSSCQPACCTSSPCQQACCVPVCCKSNCCKPVCCVSIC 138



to top

>KR102_HUMAN (P60368) Keratin-associated protein 10-2 (Keratin-associated|
           protein 10.2) (High sulfur keratin-associated protein
           10.2) (Keratin-associated protein 18-2)
           (Keratin-associated protein 18.2)
          Length = 255

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 153 ESSSCQTRCCGANSCCFVARA-WFCMILTCISIC 55
           + SSCQ  CC ++SC    R    C  + C+  C
Sbjct: 122 QQSSCQPACCASSSCQQSCRVPVCCKAVCCVPTC 155



to top

>YNK0_YEAST (P50945) Hypothetical 27.0 kDa protein in POL1-RAS2 intergenic|
           region
          Length = 234

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
 Frame = +2

Query: 83  QNHALATKQQLLAPQ-----HRVWQELDSAGYLTKKCSL 184
           QN   AT+  LL        H  W+ +   GY+ KKC L
Sbjct: 170 QNLVNATENDLLPADFVKSYHNTWKRIYEEGYVAKKCDL 208



to top

>C43BP_MOUSE (Q9EQG9) Goodpasture antigen-binding protein (EC 2.7.11.9) (GPBP)|
           (Collagen type IV alpha-3-binding protein) (StAR-related
           lipid transfer protein 11) (StARD11) (START
           domain-containing protein 11)
          Length = 624

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 247 AHCLKQQVKRKKSWRSRGD 191
           +HC++  VKR++SW+ R D
Sbjct: 260 SHCIELMVKREESWQKRHD 278



to top

>GHR_PIG (P19756) Growth hormone receptor precursor (GH receptor)|
           (Somatotropin receptor) [Contains: Growth
           hormone-binding protein (GH-binding protein) (GHBP)
           (Serum-binding protein)]
          Length = 638

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +1

Query: 1   GLKECSRKL---SPCGVKSVYTNTYACQDHAKPC 93
           G+ +C   L   SPC    +  N Y C+  AK C
Sbjct: 510 GISQCDMHLEVVSPCPANFIMDNAYFCEADAKKC 543



to top

>CUL2_PONPY (Q5RCF3) Cullin-2 (CUL-2)|
          Length = 745

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 68  HVRIMQNHALATKQQLLAPQHRVWQE 145
           HVR +    L +++Q+L   HR W+E
Sbjct: 68  HVRHLHKRVLESEEQVLVMYHRYWEE 93



to top

>CUL2_HUMAN (Q13617) Cullin-2 (CUL-2)|
          Length = 745

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 68  HVRIMQNHALATKQQLLAPQHRVWQE 145
           HVR +    L +++Q+L   HR W+E
Sbjct: 68  HVRHLHKRVLESEEQVLVMYHRYWEE 93



to top

>VEGFD_HUMAN (O43915) Vascular endothelial growth factor D precursor (VEGF-D)|
           (c-fos-induced growth factor) (FIGF)
          Length = 354

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
 Frame = +1

Query: 10  ECSRKLSPCGVKS--VYTNTYACQD----HAKPCPSYKTAAIGATAPRLAGARLCWLPNK 171
           EC   L  C  K    + +T +C+D    H +PC S KTA           A+ C  P +
Sbjct: 292 ECKESLETCCQKHKLFHPDTCSCEDRCPFHTRPCASGKTAC----------AKHCRFPKE 341

Query: 172 K 174
           K
Sbjct: 342 K 342


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,226,846
Number of Sequences: 219361
Number of extensions: 722277
Number of successful extensions: 2331
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2308
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top