ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl09g06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete sequence Length = 131984 Score = 61.9 bits (31), Expect = 1e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 116 ttggcgccacagcaccgcgtctggcaggagctcgactctgctggctacctaacaaaaaa 174 |||||||||||||||| || ||| ||| ||| ||||||||||||||||||||||||| Sbjct: 58410 ttggcgccacagcaccaagtatggtaggtcctcaactctgctggctacctaacaaaaaa 58352
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 61.9 bits (31), Expect = 1e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 116 ttggcgccacagcaccgcgtctggcaggagctcgactctgctggctacctaacaaaaaa 174 |||||||||||||||| || ||| ||| ||| ||||||||||||||||||||||||| Sbjct: 18154718 ttggcgccacagcaccaagtatggtaggtcctcaactctgctggctacctaacaaaaaa 18154776
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 61.9 bits (31), Expect = 1e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 116 ttggcgccacagcaccgcgtctggcaggagctcgactctgctggctacctaacaaaaaa 174 |||||||||||||||| || ||| ||| ||| ||||||||||||||||||||||||| Sbjct: 18163971 ttggcgccacagcaccaagtatggtaggtcctcaactctgctggctacctaacaaaaaa 18164029
>ref|XM_535982.2| PREDICTED: Canis familiaris cardiac titin (TTN), mRNA Length = 36258 Score = 42.1 bits (21), Expect = 0.90 Identities = 33/37 (89%) Strand = Plus / Plus Query: 4 ttgaaagaatgcagcagaaaactgtcaccttgtggtg 40 |||||| |||| || |||||||||||||||| ||||| Sbjct: 28913 ttgaaacaatggagaagaaaactgtcaccttctggtg 28949
>gb|AF508982.1| Homo sapiens Na+/Ca2+ exchanger isoform 3 (SLC8A3) gene, promoter region and complete cds Length = 145118 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 gaatgcagcagaaaactgtca 30 ||||||||||||||||||||| Sbjct: 129073 gaatgcagcagaaaactgtca 129053
>emb|CR956416.5| Pig DNA sequence from clone PigI-464E6 on chromosome 7, complete sequence Length = 141597 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 aaaaaagtgttctcttcccat 189 ||||||||||||||||||||| Sbjct: 26869 aaaaaagtgttctcttcccat 26849
>gb|AC150843.16| Medicago truncatula clone mth2-103p8, complete sequence Length = 125707 Score = 42.1 bits (21), Expect = 0.90 Identities = 24/25 (96%) Strand = Plus / Minus Query: 69 atgtcaggatcatgcaaaaccatgc 93 ||||||||||||| ||||||||||| Sbjct: 48840 atgtcaggatcattcaaaaccatgc 48816
>emb|BX324156.6| Zebrafish DNA sequence from clone CH211-215C3 in linkage group 1, complete sequence Length = 214471 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 tgaaagaatgcagcagaaaac 25 ||||||||||||||||||||| Sbjct: 196841 tgaaagaatgcagcagaaaac 196861
>emb|AL135747.4|CNS01DVE Human chromosome 14 DNA sequence BAC R-1023I22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173275 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 gaatgcagcagaaaactgtca 30 ||||||||||||||||||||| Sbjct: 17529 gaatgcagcagaaaactgtca 17509
>emb|AL160191.3|CNS01RGT Human chromosome 14 DNA sequence BAC R-486O13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 206256 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 gaatgcagcagaaaactgtca 30 ||||||||||||||||||||| Sbjct: 203549 gaatgcagcagaaaactgtca 203529
>gb|AC171274.2| Gallus gallus BAC clone CH261-121C13 from chromosome ul, complete sequence Length = 218983 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 ctagctacaaaacagcagcta 115 ||||||||||||||||||||| Sbjct: 214858 ctagctacaaaacagcagcta 214878
>gb|AC008810.8| Homo sapiens chromosome 5 clone CTD-2096I23, complete sequence Length = 157325 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aatgcagcagaaaactgtcacctt 34 |||||||||||||||| ||||||| Sbjct: 79523 aatgcagcagaaaactatcacctt 79500 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,546,090 Number of Sequences: 3902068 Number of extensions: 2546090 Number of successful extensions: 58213 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58162 Number of HSP's gapped (non-prelim): 51 length of query: 272 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 250 effective length of database: 17,147,199,772 effective search space: 4286799943000 effective search space used: 4286799943000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
