ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GUAA_HAEDU (Q7VLE9) GMP synthase [glutamine-hydrolyzing] (EC 6.3... 29 3.2
2NU3M_XENLA (P03900) NADH-ubiquinone oxidoreductase chain 3 (EC 1... 28 5.5
3T10_MOUSE (P54797) Ser/Thr-rich protein T10 in DGCR region 27 9.4
4VGLM_TSWVD (Q9IKB7) Envelope polyprotein precursor (M polyprotei... 27 9.4
5VGLM_TSWV1 (P36291) Envelope polyprotein precursor (M polyprotei... 27 9.4
6ANX11_COLLI (P14950) Annexin A1 isoform p35 (Annexin I isoform p... 27 9.4

>GUAA_HAEDU (Q7VLE9) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 523

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +1

Query: 79  SRYTSLVAS*ALHLCYDTISLEAWRYKIHRKTLQRRN*VAVVLGTAPKSSTRVEHLHPIG 258
           S+YT L+A     +    +  E W + +  K ++  N   ++L   P+S+T     H   
Sbjct: 16  SQYTQLIARRIREI---GVYCELWAWDVTEKQIREFNPTGIILSGGPESTTETNSPHAPE 72

Query: 259 HMVIFKAAV 285
           +  +FKA V
Sbjct: 73  Y--VFKAGV 79



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>NU3M_XENLA (P03900) NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 3)
          Length = 114

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 220 LVPFPELQQLNSSSVKFFYESCISRLLVRLYHSTGVMLSWLPG 92
           L+PFP   QLN+ S+   + + I  LL     + G++  WL G
Sbjct: 71  LLPFPWAAQLNTPSIVILWAALILTLL-----TLGLIYEWLQG 108



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>T10_MOUSE (P54797) Ser/Thr-rich protein T10 in DGCR region|
          Length = 276

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 291 IADGSFEDNHMTYRMQVFHSCAALWCRSQNY 199
           + D + ED    Y   + +  AA+WCR  +Y
Sbjct: 204 LPDPAIEDQGQEYVQPILNKYAAVWCRCASY 234



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>VGLM_TSWVD (Q9IKB7) Envelope polyprotein precursor (M polyprotein) [Contains:|
           Glycoprotein G1; Glycoprotein G2]
          Length = 1135

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 293 QKCLA-PMVNQTSRCILGCNYLD 358
           Q C+A P ++   +C LGC YLD
Sbjct: 525 QNCIARPSIDNLIKCRLGCEYLD 547



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>VGLM_TSWV1 (P36291) Envelope polyprotein precursor (M polyprotein) [Contains:|
           Glycoprotein G1; Glycoprotein G2]
          Length = 1135

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 293 QKCLA-PMVNQTSRCILGCNYLD 358
           Q C+A P ++   +C LGC YLD
Sbjct: 525 QNCIARPSIDNLIKCRLGCEYLD 547



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>ANX11_COLLI (P14950) Annexin A1 isoform p35 (Annexin I isoform p35) (Lipocortin|
           I) (Calpactin II) (Chromobindin-9) (Phospholipase A2
           inhibitory protein)
          Length = 341

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 174 FTEEELSCCSSGNGTKEQHKSGTLASYRSYGYLQSCR 284
           F  EEL  C  G+GT E      LAS  +    ++CR
Sbjct: 113 FDAEELRACMKGHGTDEDTLIEILASRNNKEIREACR 149


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,571,659
Number of Sequences: 219361
Number of extensions: 1007630
Number of successful extensions: 2082
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2082
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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