>gb|AC105179.6| Homo sapiens chromosome 11, clone RP11-124M12, complete sequence
          Length = 171683

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 164   atagaaaaactttacagaggagg 186
             |||||||||||||||||||||||
Sbjct: 13392 atagaaaaactttacagaggagg 13414

>gb|AC068329.8| Homo sapiens chromosome 11, clone RP11-82N10, complete sequence
          Length = 185347

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 164    atagaaaaactttacagaggagg 186
              |||||||||||||||||||||||
Sbjct: 152156 atagaaaaactttacagaggagg 152178

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 50/58 (86%), Gaps = 2/58 (3%)
 Strand = Plus / Plus

                                                                         
Query: 72      ccaaatctctagatatacaagcctggtagccagctgag--cattacacctgtgctatg 127
               ||||||| ||| || ||||||| ||||||||||  |||  ||||||||||||||||||
Sbjct: 3304464 ccaaatccctaaatttacaagcttggtagccagaagagatcattacacctgtgctatg 3304521

>dbj|AK112045.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C06, full
            insert sequence
          Length = 1551

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 50/58 (86%), Gaps = 2/58 (3%)
 Strand = Plus / Minus

                                                                      
Query: 72   ccaaatctctagatatacaagcctggtagccagctgag--cattacacctgtgctatg 127
            ||||||| ||| || ||||||| ||||||||||  |||  ||||||||||||||||||
Sbjct: 1437 ccaaatccctaaatttacaagcttggtagccagaagagatcattacacctgtgctatg 1380

>dbj|AK111883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060M06, full
            insert sequence
          Length = 2847

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 50/58 (86%), Gaps = 2/58 (3%)
 Strand = Plus / Minus

                                                                      
Query: 72   ccaaatctctagatatacaagcctggtagccagctgag--cattacacctgtgctatg 127
            ||||||| ||| || ||||||| ||||||||||  |||  ||||||||||||||||||
Sbjct: 2704 ccaaatccctaaatttacaagcttggtagccagtagagatcattacacctgtgctatg 2647

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 50/58 (86%), Gaps = 2/58 (3%)
 Strand = Plus / Plus

                                                                         
Query: 72      ccaaatctctagatatacaagcctggtagccagctgag--cattacacctgtgctatg 127
               ||||||| ||| || ||||||| ||||||||||  |||  ||||||||||||||||||
Sbjct: 3304409 ccaaatccctaaatttacaagcttggtagccagaagagatcattacacctgtgctatg 3304466

>emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 109081

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 50/58 (86%), Gaps = 2/58 (3%)
 Strand = Plus / Plus

                                                                       
Query: 72    ccaaatctctagatatacaagcctggtagccagctgag--cattacacctgtgctatg 127
             ||||||| ||| || ||||||| ||||||||||  |||  ||||||||||||||||||
Sbjct: 94850 ccaaatccctaaatttacaagcttggtagccagaagagatcattacacctgtgctatg 94907

>emb|AL355805.20| Human DNA sequence from clone RP11-29L10 on chromosome Xq21.1-21.33
             Contains a ribosomal protein L6 (RPL6) pseudogene,
             complete sequence
          Length = 76507

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 124   tatgatacaatctcactagaagcctg 149
             ||||||||||||||||| ||||||||
Sbjct: 32914 tatgatacaatctcactggaagcctg 32889

>gb|AC122685.9| Homo sapiens 12 BAC RP11-165I14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 106673

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 176   tacagaggaggaattaagttgctgta 201
             ||||||||||||||||| ||||||||
Sbjct: 18928 tacagaggaggaattaaattgctgta 18903

>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome
          Length = 1796226

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 53      atttgctttattgagaaatccaaatctct 81
               ||||| || ||||||||||||||||||||
Sbjct: 1425072 atttgattaattgagaaatccaaatctct 1425100

>gb|AE012976.1| Thermoanaerobacter tengcongensis MB4, section 3 of 244 of the
            complete genome
          Length = 10481

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 32   agaaataatttcttttatcccattt 56
            |||||||||||||||||| ||||||
Sbjct: 8059 agaaataatttcttttattccattt 8035

>gb|AC145725.2| Gasterosteus aculeatus clone CH213-173B10, complete sequence
          Length = 158904

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 270    cttcaaagctgccgtctgcaa 290
              |||||||||||||||||||||
Sbjct: 101257 cttcaaagctgccgtctgcaa 101237

>gb|AC013268.5| Homo sapiens BAC clone RP11-322F4 from 2, complete sequence
          Length = 206457

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 168    aaaaactttacagaggaggaa 188
              |||||||||||||||||||||
Sbjct: 156606 aaaaactttacagaggaggaa 156586

>gb|AC140479.3| Homo sapiens BAC clone RP11-1223D19 from 2, complete sequence
          Length = 227230

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 168    aaaaactttacagaggaggaa 188
              |||||||||||||||||||||
Sbjct: 140492 aaaaactttacagaggaggaa 140512

>gb|AC140490.3| Homo sapiens BAC clone RP11-335A19 from 2, complete sequence
          Length = 215819

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 168   aaaaactttacagaggaggaa 188
             |||||||||||||||||||||
Sbjct: 87265 aaaaactttacagaggaggaa 87245

>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome
          Length = 1796846

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 53      atttgctttattgagaaatccaaatctct 81
               ||||| || ||||||||||||||||||||
Sbjct: 1417430 atttgattaattgagaaatccaaatctct 1417458

>gb|AC121291.18| Mus musculus chromosome 5, clone RP23-170M15, complete sequence
          Length = 192717

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    gtctgcaatgcagaaatgct 302
              ||||||||||||||||||||
Sbjct: 121649 gtctgcaatgcagaaatgct 121668

>gb|AC124429.4| Mus musculus BAC clone RP24-239N4 from chromosome 13, complete sequence
          Length = 168858

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 226   agcacaagagtggaacacttgcatccta 253
             |||||||||||||| | |||||||||||
Sbjct: 93998 agcacaagagtggagctcttgcatccta 94025

>gb|AC146195.3| Pan troglodytes BAC clone RP43-25F5 from 7, complete sequence
          Length = 170968

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    catttgctttattgagaaat 71
             ||||||||||||||||||||
Sbjct: 97308 catttgctttattgagaaat 97289

>gb|AC099798.4| Homo sapiens BAC clone RP11-559E21 from 7, complete sequence
          Length = 131328

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    catttgctttattgagaaat 71
             ||||||||||||||||||||
Sbjct: 99146 catttgctttattgagaaat 99127

>gb|AC069458.2| Drosophila melanogaster 3L BAC RP98-23N10 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 169863

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    tttatcccatttgctttatt 64
             ||||||||||||||||||||
Sbjct: 65947 tttatcccatttgctttatt 65966

>gb|AC166092.4| Glycine max clone gmw1-93l19, complete sequence
          Length = 51037

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 161   ttcatagaaaaactttacagagga 184
             ||||||| ||||||||||||||||
Sbjct: 36649 ttcataggaaaactttacagagga 36672

>gb|AC087721.4| Homo sapiens chromosome 15 clone RP11-16O9 map 15q15, complete sequence
          Length = 196603

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    attcatagaaaaactttaca 179
              ||||||||||||||||||||
Sbjct: 105551 attcatagaaaaactttaca 105532

>gb|AF329945.1|AF329945 Takifugu rubripes SUN-like 1 (SUNL1), chromosome 17 open reading frame 27
              (C17orf27), transcription factor SOX9 (SOX9), and
              somatostatin receptor 2 (SSTR2) genes, complete cds; and
              ubiquitin-specific-protease-3-like protein (USP3L) gene,
              partial cds
          Length = 194498

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     gaaataatttcttttatccc 52
              ||||||||||||||||||||
Sbjct: 159754 gaaataatttcttttatccc 159735

>gb|AC025040.7|AC025040 Homo sapiens chromosome 15 clone CTD-2647E9 map 15q21.1, complete
             sequence
          Length = 173394

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    ttttatcccatttgctttat 63
             ||||||||||||||||||||
Sbjct: 51946 ttttatcccatttgctttat 51965

>gb|AC073181.8|AC073181 Homo sapiens clone RP13-493F23, complete sequence
          Length = 105036

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    catttgctttattgagaaat 71
             ||||||||||||||||||||
Sbjct: 21076 catttgctttattgagaaat 21095

>gb|AC154705.2| Mus musculus BAC clone RP23-131F11 from chromosome 16, complete
             sequence
          Length = 177886

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 252   tataggtcatatggttatct 271
             ||||||||||||||||||||
Sbjct: 54004 tataggtcatatggttatct 54023

>gb|AC106722.5| Homo sapiens 3 BAC RP11-107G13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 126781

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    ttttatcccatttgctttat 63
             ||||||||||||||||||||
Sbjct: 71444 ttttatcccatttgctttat 71463

>emb|AL929594.17| Zebrafish DNA sequence from clone CH211-196L2 in linkage group 19,
             complete sequence
          Length = 188746

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 284   tctgcaatgcagaaatgctt 303
             ||||||||||||||||||||
Sbjct: 10917 tctgcaatgcagaaatgctt 10898

>gb|AE003516.4| Drosophila melanogaster chromosome 3L, section 69 of 83 of the complete
              sequence
          Length = 305312

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     tttatcccatttgctttatt 64
              ||||||||||||||||||||
Sbjct: 199277 tttatcccatttgctttatt 199296


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,746,327
Number of Sequences: 3902068
Number of extensions: 3746327
Number of successful extensions: 72383
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 72268
Number of HSP's gapped (non-prelim): 123
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)