ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl09g03 |
|---|---|
| Clone Library Name | barley_pub |
>TOP1_ARATH (P30181) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 916 Score = 45.1 bits (105), Expect = 4e-05 Identities = 18/25 (72%), Positives = 23/25 (92%) Frame = -3 Query: 383 IEKIFSKTILAKFGWAMDVEPDFRF 309 IEKIF+K++L KF WAMDVEP++RF Sbjct: 889 IEKIFTKSLLEKFAWAMDVEPEYRF 913
>TOP1_DAUCA (P93119) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 790 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/25 (72%), Positives = 21/25 (84%) Frame = -3 Query: 383 IEKIFSKTILAKFGWAMDVEPDFRF 309 IEKIF+K++LAKF WAMDV FRF Sbjct: 766 IEKIFNKSLLAKFAWAMDVVLIFRF 790
>TOP1_SCHPO (P07799) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 814 Score = 36.6 bits (83), Expect = 0.015 Identities = 15/25 (60%), Positives = 19/25 (76%) Frame = -3 Query: 383 IEKIFSKTILAKFGWAMDVEPDFRF 309 IEK+FSKTI KF WA D PD+++ Sbjct: 790 IEKLFSKTIRDKFNWAADTPPDWKW 814
>TAF7_YEAST (Q05021) Transcription initiation factor TFIID subunit 7| (TBP-associated factor 7) (TBP-associated factor 67 kDa) (TAFII-67) Length = 590 Score = 33.1 bits (74), Expect = 0.17 Identities = 23/82 (28%), Positives = 42/82 (51%) Frame = +3 Query: 63 RPKCKHEFRQSDHSKYGREDG*KKSLQRECRVLPSSRSRETSKNKHRALPLLLVAVRCPG 242 +PK K ++ S G+E K SL+ + + ++ E K H+A L L +R PG Sbjct: 42 KPKLKINLKKKKESADGKEK--KNSLKLKLNL---KKNEEPVKKIHKAPKLRLKPIRIPG 96 Query: 243 EGLEAESNLPRGHWLIQNPILL 308 E ++E++ LI++ ++L Sbjct: 97 EAYDSEASDIEDDPLIESGVIL 118
>TOP1_YEAST (P04786) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Maintenance of killer protein 1) Length = 769 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/26 (53%), Positives = 21/26 (80%), Gaps = 1/26 (3%) Frame = -3 Query: 383 IEKIFSKTILAKFGWAMD-VEPDFRF 309 IEKIF+KT+ KF WA++ V+ ++RF Sbjct: 744 IEKIFTKTLREKFKWAIESVDENWRF 769
>TOP1_HUMAN (P11387) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 765 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%) Frame = -3 Query: 383 IEKIFSKTILAKFGWAMDV-EPDFRF 309 IEKI++KT KF WA+D+ + D+ F Sbjct: 740 IEKIYNKTQREKFAWAIDMADEDYEF 765
>TOP1_RAT (Q9WUL0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 767 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%) Frame = -3 Query: 383 IEKIFSKTILAKFGWAMDV-EPDFRF 309 IEKI++KT KF WA+D+ + D+ F Sbjct: 742 IEKIYNKTQREKFAWAIDMTDEDYEF 767
>TOP1_MOUSE (Q04750) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 767 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%) Frame = -3 Query: 383 IEKIFSKTILAKFGWAMDV-EPDFRF 309 IEKI++KT KF WA+D+ + D+ F Sbjct: 742 IEKIYNKTQREKFAWAIDMTDEDYEF 767
>TOP1_CRIGR (Q07050) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 767 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%) Frame = -3 Query: 383 IEKIFSKTILAKFGWAMDV-EPDFRF 309 IEKI++KT KF WA+D+ + D+ F Sbjct: 742 IEKIYNKTQREKFAWAIDMTDEDYEF 767
>TOP1_CERAE (Q7YR26) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 767 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%) Frame = -3 Query: 383 IEKIFSKTILAKFGWAMDV-EPDFRF 309 IEKI++KT KF WA+D+ + D+ F Sbjct: 742 IEKIYNKTQREKFAWAIDMADEDYEF 767
>PP1G_XENLA (P36874) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) Length = 323 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1G_RAT (P63088) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) (Protein phosphatase 1C catalytic subunit) Length = 323 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1G_MOUSE (P63087) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) (Protein phosphatase 1C catalytic subunit) Length = 323 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1G_HUMAN (P36873) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) (Protein phosphatase 1C catalytic subunit) Length = 323 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1G_CANFA (Q8MJ46) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) (Protein phosphatase 1C catalytic subunit) Length = 323 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1G_BOVIN (P61287) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) (Protein phosphatase 1C catalytic subunit) Length = 323 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>DNLJ_THEFI (Q9ZHI0) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase| [NAD+]) (Tfi DNA ligase) Length = 670 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/67 (28%), Positives = 29/67 (43%) Frame = +3 Query: 177 RETSKNKHRALPLLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLCK 356 R+ ++KHR L LL A+ PG G NL R + + E L++ +L Sbjct: 496 RQIEESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELLEVEEVGELTA 555 Query: 357 NRLAENL 377 + E L Sbjct: 556 RAILETL 562
>NU5M_TRIRE (Q8SHP7) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3)| Length = 692 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Frame = -3 Query: 149 FSL*AFFLPIFSSVLAMV---RLPKLVFAFGPTN 57 F L FFL IF SVL++V +PK+V F TN Sbjct: 509 FKLLPFFLTIFFSVLSIVYYEYMPKVVVDFNLTN 542
>PP1A_RAT (P62138) Serine/threonine-protein phosphatase PP1-alpha catalytic| subunit (EC 3.1.3.16) (PP-1A) Length = 330 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ N RG L I L I L++ P K+C Sbjct: 16 LLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1A_RABIT (P62139) Serine/threonine-protein phosphatase PP1-alpha catalytic| subunit (EC 3.1.3.16) (PP-1A) Length = 330 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ N RG L I L I L++ P K+C Sbjct: 16 LLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1A_MOUSE (P62137) Serine/threonine-protein phosphatase PP1-alpha catalytic| subunit (EC 3.1.3.16) (PP-1A) Length = 330 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ N RG L I L I L++ P K+C Sbjct: 16 LLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1A_HUMAN (P62136) Serine/threonine-protein phosphatase PP1-alpha catalytic| subunit (EC 3.1.3.16) (PP-1A) Length = 330 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ N RG L I L I L++ P K+C Sbjct: 16 LLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1A_CANFA (Q8WMS6) Serine/threonine-protein phosphatase PP1-alpha catalytic| subunit (EC 3.1.3.16) (PP-1A) Length = 330 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ N RG L I L I L++ P K+C Sbjct: 16 LLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>TOP1_CANAL (Q00313) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 778 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%) Frame = -3 Query: 383 IEKIFSKTILAKFGWAMD-VEPDFRF 309 IEK+F+KT+ KF WA++ + ++RF Sbjct: 753 IEKLFTKTLREKFIWAIESADENWRF 778
>PPIG_HUMAN (Q13427) Peptidyl-prolyl cis-trans isomerase G (EC 5.2.1.8)| (Peptidyl-prolyl isomerase G) (PPIase G) (Rotamase G) (Cyclophilin G) (Clk-associating RS-cyclophilin) (CARS-cyclophilin) (CARS-Cyp) (SR-cyclophilin) (SRcyp) (SR-cyp) (CASP10) Length = 754 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%) Frame = +3 Query: 90 QSDHSKYGREDG*KKSLQRECRVLP-----SSRSRETSKNKHRA 206 + DHSK +D +S REC + +SR+RE S+++ R+ Sbjct: 529 EHDHSKSKEKDRRAQSRSRECDITKGKHSYNSRTRERSRSRDRS 572
>IFRH_ARATH (P52577) Isoflavone reductase homolog P3 (EC 1.3.1.-)| Length = 310 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +1 Query: 34 PSALNKLKFVGPNANTSLGNRTIASTEEKMGR 129 P LNK+ ++ P+ NT N + E+K+G+ Sbjct: 208 PRTLNKILYIKPSNNTLSMNEIVTLWEKKIGK 239 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,308,875 Number of Sequences: 219361 Number of extensions: 1220333 Number of successful extensions: 2941 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2914 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2940 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
