ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
2dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
3dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
4dbj|AK060837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
5emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 141 2e-30
6gb|BT019203.1| Zea mays clone Contig876.F mRNA sequence 78 2e-11
7gb|BT018365.1| Zea mays clone EL01N0311E09.c mRNA sequence 78 2e-11
8gb|AY103815.1| Zea mays PCO096873 mRNA sequence 70 5e-09
9gb|BT013018.1| Lycopersicon esculentum clone 114256R, mRNA sequence 46 0.070
10gb|AY491010.1| Leishmania major Hut1L protein (Hut1L) gene, comp... 42 1.1
11dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 42 1.1
12gb|BT018310.1| Zea mays clone EL01T0206H09.c mRNA sequence 40 4.3
13gb|AC087289.9| Homo sapiens chromosome 17, clone RP11-552F3, com... 40 4.3
14emb|AL590426.6| Human DNA sequence from clone RP11-354K4 on chro... 40 4.3
15emb|AL358216.33| Human DNA sequence from clone RP11-809C18 on ch... 40 4.3
16emb|AL672262.11| Mouse DNA sequence from clone RP23-318G8 on chr... 40 4.3
17emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 i... 40 4.3
18emb|BX322651.3| Zebrafish DNA sequence from clone DKEYP-32G10, c... 40 4.3
19dbj|AK130224.1| Homo sapiens cDNA FLJ26714 fis, clone PNC01043 40 4.3
20gb|AY104202.1| Zea mays PCO125624 mRNA sequence 40 4.3 
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  141 bits (71), Expect = 2e-30
 Identities = 125/143 (87%)
 Strand = Plus / Minus

                                                                            
Query: 169      ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 228
                ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 19193103 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 19193044

                                                                            
Query: 229      gtttgctcctgcacatggacagtgtagaaacctgtagctgtggctgcagatggggccctt 288
                |||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||
Sbjct: 19193043 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatggggccctt 19192984

                                       
Query: 289      ccgacgtacttgatatcatctat 311
                || ||||| ||||| || |||||
Sbjct: 19192983 ccaacgtatttgatgtcgtctat 19192961



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 84       gattattcaccaaatggctg 103
                ||||||||||||||||||||
Sbjct: 19193185 gattattcaccaaatggctg 19193166
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>dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N21, full
            insert sequence
          Length = 3612

 Score =  141 bits (71), Expect = 2e-30
 Identities = 125/143 (87%)
 Strand = Plus / Minus

                                                                        
Query: 169  ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 228
            ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 3333 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 3274

                                                                        
Query: 229  gtttgctcctgcacatggacagtgtagaaacctgtagctgtggctgcagatggggccctt 288
            |||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||
Sbjct: 3273 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatggggccctt 3214

                                   
Query: 289  ccgacgtacttgatatcatctat 311
            || ||||| ||||| || |||||
Sbjct: 3213 ccaacgtatttgatgtcgtctat 3191



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 84   gattattcaccaaatggctg 103
            ||||||||||||||||||||
Sbjct: 3415 gattattcaccaaatggctg 3396
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>dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O03, full
            insert sequence
          Length = 3581

 Score =  141 bits (71), Expect = 2e-30
 Identities = 125/143 (87%)
 Strand = Plus / Minus

                                                                        
Query: 169  ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 228
            ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 3379 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 3320

                                                                        
Query: 229  gtttgctcctgcacatggacagtgtagaaacctgtagctgtggctgcagatggggccctt 288
            |||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||
Sbjct: 3319 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatggggccctt 3260

                                   
Query: 289  ccgacgtacttgatatcatctat 311
            || ||||| ||||| || |||||
Sbjct: 3259 ccaacgtatttgatgtcgtctat 3237



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 84   gattattcaccaaatggctg 103
            ||||||||||||||||||||
Sbjct: 3461 gattattcaccaaatggctg 3442
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>dbj|AK060837.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C11, full
            insert sequence
          Length = 1546

 Score =  141 bits (71), Expect = 2e-30
 Identities = 125/143 (87%)
 Strand = Plus / Minus

                                                                        
Query: 169  ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 228
            ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 1314 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 1255

                                                                        
Query: 229  gtttgctcctgcacatggacagtgtagaaacctgtagctgtggctgcagatggggccctt 288
            |||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||
Sbjct: 1254 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatggggccctt 1195

                                   
Query: 289  ccgacgtacttgatatcatctat 311
            || ||||| ||||| || |||||
Sbjct: 1194 ccaacgtatttgatgtcgtctat 1172



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 84   gattattcaccaaatggctg 103
            ||||||||||||||||||||
Sbjct: 1396 gattattcaccaaatggctg 1377
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>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
              complete sequence
          Length = 151936

 Score =  141 bits (71), Expect = 2e-30
 Identities = 125/143 (87%)
 Strand = Plus / Minus

                                                                          
Query: 169    ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 228
              ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 126625 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 126566

                                                                          
Query: 229    gtttgctcctgcacatggacagtgtagaaacctgtagctgtggctgcagatggggccctt 288
              |||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||
Sbjct: 126565 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatggggccctt 126506

                                     
Query: 289    ccgacgtacttgatatcatctat 311
              || ||||| ||||| || |||||
Sbjct: 126505 ccaacgtatttgatgtcgtctat 126483



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     gattattcaccaaatggctg 103
              ||||||||||||||||||||
Sbjct: 126707 gattattcaccaaatggctg 126688
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>gb|BT019203.1| Zea mays clone Contig876.F mRNA sequence
          Length = 703

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 105/127 (82%)
 Strand = Plus / Minus

                                                                       
Query: 176 ttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcggtttgct 235
           ||||||||||| | |||||||||||  ||||||| ||||| | ||| ||||| || ||||
Sbjct: 468 ttcagaacgggtagttgatggggtcgcgctgcagggccttttgcaccagctccgtctgct 409

                                                                       
Query: 236 cctgcacatggacagtgtagaaacctgtagctgtggctgcagatggggcccttccgacgt 295
           ||||||| || || | |||||| || ||||| || || || || |||||||| |||||||
Sbjct: 408 cctgcacgtgcaccgagtagaagcccgtagcagtagcagccgacggggccctgccgacgt 349

                  
Query: 296 acttgat 302
           |||||||
Sbjct: 348 acttgat 342
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>gb|BT018365.1| Zea mays clone EL01N0311E09.c mRNA sequence
          Length = 674

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 105/127 (82%)
 Strand = Plus / Minus

                                                                       
Query: 176 ttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcggtttgct 235
           ||||||||||| | |||||||||||  ||||||| ||||| | ||| ||||| || ||||
Sbjct: 470 ttcagaacgggtagttgatggggtcgcgctgcagggccttttgcaccagctccgtctgct 411

                                                                       
Query: 236 cctgcacatggacagtgtagaaacctgtagctgtggctgcagatggggcccttccgacgt 295
           ||||||| || || | |||||| || ||||| || || || || |||||||| |||||||
Sbjct: 410 cctgcacgtgcaccgagtagaagcccgtagcagtagcagccgacggggccctgccgacgt 351

                  
Query: 296 acttgat 302
           |||||||
Sbjct: 350 acttgat 344
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>gb|AY103815.1| Zea mays PCO096873 mRNA sequence
          Length = 1431

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 104/127 (81%)
 Strand = Plus / Minus

                                                                        
Query: 176  ttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcggtttgct 235
            ||||||| ||| | |||| ||||||  ||||||||||||||| ||| ||||| || ||||
Sbjct: 1130 ttcagaaagggtagttgagggggtcgcgctgcagcgccttctgcaccagctccgtctgct 1071

                                                                        
Query: 236  cctgcacatggacagtgtagaaacctgtagctgtggctgcagatggggcccttccgacgt 295
            ||||||| || || | |||||| || || || || || || || |||||||| |||||||
Sbjct: 1070 cctgcacgtgcaccgagtagaagcccgtcgcggtagcagccgacggggccctgccgacgt 1011

                   
Query: 296  acttgat 302
            |||||||
Sbjct: 1010 acttgat 1004
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>gb|BT013018.1| Lycopersicon esculentum clone 114256R, mRNA sequence
          Length = 3457

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 252  gtagaaacctgtagctgtggctgcaga 278
            ||||||||| |||||||||||||||||
Sbjct: 3141 gtagaaaccagtagctgtggctgcaga 3115
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>gb|AY491010.1| Leishmania major Hut1L protein (Hut1L) gene, complete cds
          Length = 1732

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  taacgcgcgcggtaccacaca 75
           |||||||||||||||||||||
Sbjct: 675 taacgcgcgcggtaccacaca 655
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 4      ttttgacgggaacaaaattat 24
              |||||||||||||||||||||
Sbjct: 129858 ttttgacgggaacaaaattat 129878
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>gb|BT018310.1| Zea mays clone EL01T0206H09.c mRNA sequence
          Length = 817

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 190 ttgatggggtctggctgcagcgccttcttcacgagctcggtttgctcctgcacatg 245
           ||||| || |||| |||||| ||||||||||| ||||| |  ||||||||| ||||
Sbjct: 643 ttgatcggctctgcctgcagtgccttcttcactagctctgactgctcctgcgcatg 588
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>gb|AC087289.9| Homo sapiens chromosome 17, clone RP11-552F3, complete sequence
          Length = 203765

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   ctgtggctgcagatggggcc 285
             ||||||||||||||||||||
Sbjct: 32852 ctgtggctgcagatggggcc 32833
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>emb|AL590426.6| Human DNA sequence from clone RP11-354K4 on chromosome 6 Contains novel
              pseudogene, complete sequence
          Length = 204235

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    tcatggctatgcaaagaacc 169
              ||||||||||||||||||||
Sbjct: 122766 tcatggctatgcaaagaacc 122747
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>emb|AL358216.33| Human DNA sequence from clone RP11-809C18 on chromosome 10 Contains two
             novel genes, the gene for a novel protein (FLJ38694
             FLJ38681) and five CpG islands, complete sequence
          Length = 96891

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   gtggctgcagatggggccct 287
             ||||||||||||||||||||
Sbjct: 32127 gtggctgcagatggggccct 32146
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>emb|AL672262.11| Mouse DNA sequence from clone RP23-318G8 on chromosome 11, complete
             sequence
          Length = 101598

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    accaaatggctgtaatttag 111
             ||||||||||||||||||||
Sbjct: 78854 accaaatggctgtaatttag 78835
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>emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 in linkage group 5,
              complete sequence
          Length = 179980

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     aacaaaattatgcactgaaa 33
              ||||||||||||||||||||
Sbjct: 125048 aacaaaattatgcactgaaa 125029
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>emb|BX322651.3| Zebrafish DNA sequence from clone DKEYP-32G10, complete sequence
          Length = 152913

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    aacaaaattatgcactgaaa 33
             ||||||||||||||||||||
Sbjct: 71960 aacaaaattatgcactgaaa 71979
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>dbj|AK130224.1| Homo sapiens cDNA FLJ26714 fis, clone PNC01043
          Length = 1991

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 gtggctgcagatggggccct 287
           ||||||||||||||||||||
Sbjct: 910 gtggctgcagatggggccct 891
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>gb|AY104202.1| Zea mays PCO125624 mRNA sequence
          Length = 1720

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 190  ttgatggggtctggctgcagcgccttcttcacgagctcggtttgctcctgcacatg 245
            ||||| || |||| |||||| ||||||||||| ||||| |  ||||||||| ||||
Sbjct: 1545 ttgatcggctctgcctgcagtgccttcttcactagctctgactgctcctgcgcatg 1490


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,647,804
Number of Sequences: 3902068
Number of extensions: 2647804
Number of successful extensions: 46043
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45989
Number of HSP's gapped (non-prelim): 54
length of query: 327
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 305
effective length of database: 17,147,199,772
effective search space: 5229895930460
effective search space used: 5229895930460
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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