>K125_TOBAC (O23826) 125 kDa kinesin-related protein|
          Length = 1006

 Score = 35.0 bits (79), Expect = 0.046
 Identities = 18/29 (62%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
 Frame = -3

Query: 339  FRENHPYESS--KEPKPSLIPRSPRATLN 259
            FREN+ +ES   KE KPSLIPRSP + +N
Sbjct: 977  FRENNSFESFQVKEVKPSLIPRSPFSQIN 1005

>DLL3_HUMAN (Q9NYJ7) Delta-like protein 3 precursor (Drosophila Delta homolog|
           3)
          Length = 618

 Score = 30.8 bits (68), Expect = 0.87
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 18/71 (25%)
 Frame = -3

Query: 183 CPCCARFYGM---LALIQCLLHSC*NVSICCGAAE---------------YSCKKFYDEC 58
           C C   FYG+   ++ + C    C N  +C G A+                +C+K  D C
Sbjct: 298 CTCPRGFYGLRCEVSGVTCADGPCFNGGLCVGGADPDSAYICHCPPGFQGSNCEKRVDRC 357

Query: 57  LLHSC*NVSIC 25
            L  C N  +C
Sbjct: 358 SLQPCRNGGLC 368

>NOTCH_DROME (P07207) Neurogenic locus Notch protein precursor|
          Length = 2703

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 84  SCKKFYDECLLHSC*NVSICC-GAAEYSC 1
           +C++ YD+CL H C N   C  G ++Y+C
Sbjct: 289 NCEQNYDDCLGHLCQNGGTCIDGISDYTC 317

>HELS_METJA (Q58524) Putative ski2-type helicase (EC 3.6.1.-) [Contains:|
           Endonuclease PI-MjaHel (EC 3.1.-.-) (Mja Hel intein)
           (Mja Pep3 intein)]
          Length = 1195

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 18  LHNKWIHSSRNAKDTRHRIFYKNIRRLHNKLIHSSKNAKD 137
           LH K+    R +K   H I+ K +R++ NKL   +K+ K+
Sbjct: 490 LHKKYFLKCRISKGVAHYIYSKKLRKIFNKLNMLTKDNKN 529

>DLL3_MOUSE (O88516) Delta-like protein 3 precursor (Drosophila Delta homolog|
           3) (M-Delta-3)
          Length = 592

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 18/71 (25%)
 Frame = -3

Query: 183 CPCCARFYGM---LALIQCLLHSC*NVSICCGAAE---------------YSCKKFYDEC 58
           C C   FYG+   ++ + C    C N  +C G  +                +C+K  D C
Sbjct: 296 CACPRGFYGLRCEVSGVTCADGPCFNGGLCVGGEDPDSAYVCHCPPGFQGSNCEKRVDRC 355

Query: 57  LLHSC*NVSIC 25
            L  C N  +C
Sbjct: 356 SLQPCQNGGLC 366

>ATM_ARATH (Q9M3G7) Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Ataxia|
            telangiectasia mutated homolog) (AtATM)
          Length = 3856

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 42   SRNAKDTRHRIFYKNIRRLHNKLIHSSKNAKDTG*GLASHKTWHSKD 182
            SR +     R   ++++ LHNKLI S  + +DT  G  +   W S D
Sbjct: 2363 SRRSNYLPPRFLSRSLQALHNKLIASEVSQEDTN-GETAETFWQSDD 2408

>NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) [Contains: Notch 2 extracellular truncation; Notch 2
           intracellular domain]
          Length = 2471

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 17/78 (21%)
 Frame = -3

Query: 183 CPCCARFYGMLA---LIQCLLHSC*NVSICCGAAEYS-------------CKKFYDECLL 52
           C C  RF G       + C    C N   C    +++             C++  D+C  
Sbjct: 207 CQCPQRFTGQHCDSPYVPCAPSPCVNGGTCRQTGDFTSECHCLPGFEGSNCERNIDDCPN 266

Query: 51  HSC*NVSICC-GAAEYSC 1
           H C N  +C  G   Y+C
Sbjct: 267 HKCQNGGVCVDGVNTYNC 284

>DMDB_DROME (Q9VDW3) Dystrophin, isoform B|
          Length = 1669

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 226  HTEKKYYHCFSVECRTWRARDERRLGFL 309
            H E+KY + F +   T R  D+RRLG L
Sbjct: 1172 HLEEKYRYLFRLVADTDRRADQRRLGLL 1199

>ATRX_MACEU (P82798) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent|
           helicase ATRX) (X-linked nuclear protein) (Fragment)
          Length = 497

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -2

Query: 127 FLLECINLLWSRRIFL*KIL*RVSFAFLLECIHLLWSRRIF 5
           FLL+ ++LL+ +  F  KI   +   FLL+ +HLL+S  +F
Sbjct: 415 FLLQIVDLLFFKFYFFFKI--SLISIFLLQIVHLLFSLNLF 453

>DMDA_DROME (Q9VDW6) Dystrophin, isoforms A/C/DLP1/DLP3|
          Length = 3497

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 226  HTEKKYYHCFSVECRTWRARDERRLGFL 309
            H E+KY + F +   T R  D+RRLG L
Sbjct: 3000 HLEEKYRYLFRLVADTDRRADQRRLGLL 3027

>PALA_SCHPO (Q09807) pH-response regulator protein palA/rim20|
          Length = 701

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/42 (28%), Positives = 28/42 (66%), Gaps = 6/42 (14%)
 Frame = +3

Query: 33  IHSSRNAKDTRHRIFYKNIRRLHNKL------IHSSKNAKDT 140
           I+S +++++ + + FY ++ +LH ++      + +S+NAKDT
Sbjct: 450 INSVKSSQNMKEKGFYSDVIKLHEEVSLLKVNVENSQNAKDT 491

>YFGJ_ECOLI (P76575) Hypothetical protein yfgJ|
          Length = 83

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = -3

Query: 237 LFCVQCNLIRTSNRCWL*CPCCARFYGMLALI-QCLLHSC*NVSICCGAAEYSCK 76
           L C QC  +   +     C  C  F  M AL   C  H    V   CGA +Y C+
Sbjct: 15  LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDC--HQPLQVLKACGAVDYFCQ 67

>HIS8_BLOFL (Q7VQW9) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 356

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 134 FCILARMYQFVVEPPNILVKNSMTSVFCIPARMYPFVVEPPNIL 3
           FC  A + Q + E PN+++  +++  F +      F +  P I+
Sbjct: 187 FCRHASLIQLLTEYPNLIILRTLSKAFALAGLRCGFTLANPKII 230

>CRUM1_MOUSE (Q8VHS2) Crumbs homolog 1 precursor|
          Length = 1405

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 114 VSICC-GAAEYSCKKFYDECLLHSC*NVSIC 25
           V IC  G     C++  DECLLH C N   C
Sbjct: 381 VCICQPGFTGIHCEEDVDECLLHPCLNGGTC 411


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,864,885
Number of Sequences: 219361
Number of extensions: 921976
Number of successful extensions: 2411
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2409
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)