Clone Name | rbastl09f08 |
---|---|
Clone Library Name | barley_pub |
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 66.2 bits (160), Expect = 2e-11 Identities = 34/39 (87%), Positives = 34/39 (87%), Gaps = 5/39 (12%) Frame = -3 Query: 245 GAGMVPYVLLRPSDGDPTD-----EKMVMEMGIPNSISI 144 GAGMVPYVLLRPSDGDPTD EKMVMEMGIPNSISI Sbjct: 898 GAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 57.8 bits (138), Expect = 7e-09 Identities = 27/34 (79%), Positives = 30/34 (88%) Frame = -3 Query: 245 GAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144 GAG+VPYVLLRP +G+P D K VMEMGIPNSISI Sbjct: 899 GAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 33.5 bits (75), Expect = 0.15 Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 2/36 (5%) Frame = -3 Query: 245 GAGMVPYVLLRPSDGDPTDEKM--VMEMGIPNSISI 144 G +PY+LL P+ D T EK + MGIPNSISI Sbjct: 842 GPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 32.3 bits (72), Expect = 0.33 Identities = 19/34 (55%), Positives = 21/34 (61%) Frame = -3 Query: 245 GAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144 GAG+VPY LL+ P E V GIPNSISI Sbjct: 868 GAGIVPYELLK-----PFSEPGVTGRGIPNSISI 896
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 30.8 bits (68), Expect = 0.97 Identities = 18/34 (52%), Positives = 21/34 (61%) Frame = -3 Query: 245 GAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144 GAG+V Y LL+P T E V MG+P SISI Sbjct: 868 GAGVVKYELLKP-----TSEHGVTGMGVPYSISI 896
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = -3 Query: 245 GAGMVPYVLLRP-SDGDPTDEKMVMEMGIPNSISI 144 GAG++PY L++P SD T MGIPNS SI Sbjct: 913 GAGILPYQLMKPFSDAGVTG------MGIPNSTSI 941
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 30.0 bits (66), Expect = 1.6 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = -3 Query: 245 GAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144 GAG++PY L++ P + V MGIPNS SI Sbjct: 896 GAGILPYQLMK-----PFSDSGVTGMGIPNSTSI 924
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 29.3 bits (64), Expect = 2.8 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -3 Query: 245 GAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144 GAG++PY L+ PS G + G+PNS++I Sbjct: 871 GAGVLPYELMAPSSGPG-----ITCRGVPNSVTI 899
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 28.9 bits (63), Expect = 3.7 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = -3 Query: 245 GAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144 GAG++PY LL PS V G+PNSISI Sbjct: 890 GAGVLPYELLAPS-----SPPGVTCRGVPNSISI 918
>CF1A_DROME (P16241) POU-domain protein CF1A (Chorion factor 1A) (CF1-A)| (Ventral veins lacking protein) (Drifter protein) Length = 427 Score = 27.7 bits (60), Expect = 8.2 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Frame = +3 Query: 66 PTAG-PRD*RHSYLRLVELHTHTQGSSNGDAVGDAHLHHHLLVRGITVRRPEQHIRHHAG 242 PT G P H+ ++ H +++ +V A LHH L RG P+ HI HH G Sbjct: 148 PTGGSPLQYHHAMNGMLHHPAHAVAAAHHQSV--APLHHTL--RG---ESPQLHIHHHMG 200 Query: 243 AG 248 G Sbjct: 201 GG 202
>Y463_CHRVO (Q7P0V2) UPF0341 protein CV_0463| Length = 258 Score = 27.7 bits (60), Expect = 8.2 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = -2 Query: 249 TRRRHGAVCAAQAVGR*SHGREDGDGDGHP 160 T +HGAV A G H RE G G G P Sbjct: 50 TTGKHGAVYAEFVEGAARHRREQGGGRGQP 79
>ACDE2_METTE (Q9C4Z3) Acetyl-CoA decarbonylase/synthase complex epsilon subunit| 2 (ACDS complex epsilon subunit 2) Length = 170 Score = 27.7 bits (60), Expect = 8.2 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -3 Query: 80 WPGGGYNGNEHQIIIKGHDDIYI 12 WPG NGN II+ GH YI Sbjct: 99 WPGLDGNGNYDTIILLGHKKYYI 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,034,464 Number of Sequences: 219361 Number of extensions: 795187 Number of successful extensions: 2053 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1967 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2039 length of database: 80,573,946 effective HSP length: 58 effective length of database: 67,851,008 effective search space used: 1628424192 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)