ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 66 2e-11
2LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC... 58 7e-09
3LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12) 33 0.15
4LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC... 32 0.33
5LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13... 31 0.97
6LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precur... 30 1.6
7LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1... 30 1.6
8LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12) 29 2.8
9LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12) 29 3.7
10CF1A_DROME (P16241) POU-domain protein CF1A (Chorion factor 1A) ... 28 8.2
11Y463_CHRVO (Q7P0V2) UPF0341 protein CV_0463 28 8.2
12ACDE2_METTE (Q9C4Z3) Acetyl-CoA decarbonylase/synthase complex e... 28 8.2

>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
            (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 34/39 (87%), Positives = 34/39 (87%), Gaps = 5/39 (12%)
 Frame = -3

Query: 245  GAGMVPYVLLRPSDGDPTD-----EKMVMEMGIPNSISI 144
            GAGMVPYVLLRPSDGDPTD     EKMVMEMGIPNSISI
Sbjct: 898  GAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936



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>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)|
            (LOX2:Hv:2)
          Length = 932

 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = -3

Query: 245  GAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144
            GAG+VPYVLLRP +G+P D K VMEMGIPNSISI
Sbjct: 899  GAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932



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>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)|
          Length = 877

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -3

Query: 245 GAGMVPYVLLRPSDGDPTDEKM--VMEMGIPNSISI 144
           G   +PY+LL P+  D T EK   +  MGIPNSISI
Sbjct: 842 GPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877



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>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)|
           (LOX2:Hv:3)
          Length = 896

 Score = 32.3 bits (72), Expect = 0.33
 Identities = 19/34 (55%), Positives = 21/34 (61%)
 Frame = -3

Query: 245 GAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144
           GAG+VPY LL+     P  E  V   GIPNSISI
Sbjct: 868 GAGIVPYELLK-----PFSEPGVTGRGIPNSISI 896



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>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)|
          Length = 896

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = -3

Query: 245 GAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144
           GAG+V Y LL+P     T E  V  MG+P SISI
Sbjct: 868 GAGVVKYELLKP-----TSEHGVTGMGVPYSISI 896



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>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC|
           1.13.11.12)
          Length = 941

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 245 GAGMVPYVLLRP-SDGDPTDEKMVMEMGIPNSISI 144
           GAG++PY L++P SD   T       MGIPNS SI
Sbjct: 913 GAGILPYQLMKPFSDAGVTG------MGIPNSTSI 941



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>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)|
          Length = 924

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -3

Query: 245 GAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144
           GAG++PY L++     P  +  V  MGIPNS SI
Sbjct: 896 GAGILPYQLMK-----PFSDSGVTGMGIPNSTSI 924



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>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)|
          Length = 899

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 245 GAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144
           GAG++PY L+ PS G       +   G+PNS++I
Sbjct: 871 GAGVLPYELMAPSSGPG-----ITCRGVPNSVTI 899



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>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)|
          Length = 918

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -3

Query: 245 GAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144
           GAG++PY LL PS         V   G+PNSISI
Sbjct: 890 GAGVLPYELLAPS-----SPPGVTCRGVPNSISI 918



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>CF1A_DROME (P16241) POU-domain protein CF1A (Chorion factor 1A) (CF1-A)|
           (Ventral veins lacking protein) (Drifter protein)
          Length = 427

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 66  PTAG-PRD*RHSYLRLVELHTHTQGSSNGDAVGDAHLHHHLLVRGITVRRPEQHIRHHAG 242
           PT G P    H+   ++    H   +++  +V  A LHH L  RG     P+ HI HH G
Sbjct: 148 PTGGSPLQYHHAMNGMLHHPAHAVAAAHHQSV--APLHHTL--RG---ESPQLHIHHHMG 200

Query: 243 AG 248
            G
Sbjct: 201 GG 202



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>Y463_CHRVO (Q7P0V2) UPF0341 protein CV_0463|
          Length = 258

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -2

Query: 249 TRRRHGAVCAAQAVGR*SHGREDGDGDGHP 160
           T  +HGAV A    G   H RE G G G P
Sbjct: 50  TTGKHGAVYAEFVEGAARHRREQGGGRGQP 79



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>ACDE2_METTE (Q9C4Z3) Acetyl-CoA decarbonylase/synthase complex epsilon subunit|
           2 (ACDS complex epsilon subunit 2)
          Length = 170

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 80  WPGGGYNGNEHQIIIKGHDDIYI 12
           WPG   NGN   II+ GH   YI
Sbjct: 99  WPGLDGNGNYDTIILLGHKKYYI 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,034,464
Number of Sequences: 219361
Number of extensions: 795187
Number of successful extensions: 2053
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2039
length of database: 80,573,946
effective HSP length: 58
effective length of database: 67,851,008
effective search space used: 1628424192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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