ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT009689.5| Pig DNA sequence from clone CH242-266P8 on chrom... 46 0.070
2emb|AL354951.7| Human DNA sequence from clone RP11-451M19 on chr... 42 1.1
3gb|AC169503.1| Mus musculus BAC clone RP24-281B5 from chromosome... 40 4.3
4emb|AL591421.8| Human DNA sequence from clone RP11-394N20 on chr... 40 4.3
5emb|AL161442.22| Human DNA sequence from clone RP6-102F8 on chro... 40 4.3
6emb|AL645611.9| Mouse DNA sequence from clone RP23-432O24 on chr... 40 4.3
7gb|AC135960.14| Pan troglodytes clone rp43-55o12, complete sequence 40 4.3
8emb|BX548078.8| Zebrafish DNA sequence from clone CH211-212C13 i... 40 4.3
9gb|AC035140.7| Homo sapiens chromosome 5 clone CTD-2631K10, comp... 40 4.3
10gb|AC000079.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 49c1... 40 4.3
11gb|AC000068.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 102g... 40 4.3
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
13dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 40 4.3
14dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
15dbj|AP004668.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3

>emb|CT009689.5| Pig DNA sequence from clone CH242-266P8 on chromosome 17, complete
             sequence
          Length = 38080

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 179   cactacgtaccatctttttctct 201
             |||||||||||||||||||||||
Sbjct: 23691 cactacgtaccatctttttctct 23669



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>emb|AL354951.7| Human DNA sequence from clone RP11-451M19 on chromosome 10 Contains a
              ribosomal protein L21 (RPL21) pseudogene, the XPNPEP1 gene
              for X-prolyl aminopeptidase (aminopeptidase P) 1, soluble
              (SAMP, XPNPEP, XPNPEPL), a novel gene and one CpG island,
              complete sequence
          Length = 205329

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 101    tttcacaatcaacacatgaat 121
              |||||||||||||||||||||
Sbjct: 147139 tttcacaatcaacacatgaat 147119



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>gb|AC169503.1| Mus musculus BAC clone RP24-281B5 from chromosome 12, complete sequence
          Length = 163008

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     caaatgcaatatccacagtt 27
             ||||||||||||||||||||
Sbjct: 62840 caaatgcaatatccacagtt 62821



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>emb|AL591421.8| Human DNA sequence from clone RP11-394N20 on chromosome X, complete
             sequence
          Length = 50321

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    atgcaatatccacagttatg 30
             ||||||||||||||||||||
Sbjct: 43072 atgcaatatccacagttatg 43091



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>emb|AL161442.22| Human DNA sequence from clone RP6-102F8 on chromosome Xq25-26.3
             Contains the 5' end of variants of the MBNL3 gene for
             muscleblind-like 3 (Drosophila) and a CpG island, complete
             sequence
          Length = 112453

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   tctttttctcttcctctgca 210
             ||||||||||||||||||||
Sbjct: 54091 tctttttctcttcctctgca 54110



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>emb|AL645611.9| Mouse DNA sequence from clone RP23-432O24 on chromosome 11 Contains
             part of the Adamts2 gene for a disintegrin-like and
             metalloprotease (reprolysin type) with thrombospondin type
             1 motif 2, complete sequence
          Length = 69492

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   tacgtaccatctttttctct 201
             ||||||||||||||||||||
Sbjct: 62029 tacgtaccatctttttctct 62048



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>gb|AC135960.14| Pan troglodytes clone rp43-55o12, complete sequence
          Length = 157430

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   cagcaatttctctcctgact 261
             ||||||||||||||||||||
Sbjct: 19903 cagcaatttctctcctgact 19884



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>emb|BX548078.8| Zebrafish DNA sequence from clone CH211-212C13 in linkage group 15,
              complete sequence
          Length = 205316

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 191    tctttttctcttcctctgcaaggaaaca 218
              |||||| ||||| |||||||||||||||
Sbjct: 201366 tcttttgctctttctctgcaaggaaaca 201339



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>gb|AC035140.7| Homo sapiens chromosome 5 clone CTD-2631K10, complete sequence
          Length = 61965

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   tctttttctcttcctctgca 210
             ||||||||||||||||||||
Sbjct: 33667 tctttttctcttcctctgca 33686



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>gb|AC000079.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 49c12 In DGCR Region,
             complete sequence
          Length = 39540

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   cagcaatttctctcctgact 261
             ||||||||||||||||||||
Sbjct: 30948 cagcaatttctctcctgact 30929



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>gb|AC000068.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 102g9 In DGCR Region,
            complete sequence
          Length = 43934

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  cagcaatttctctcctgact 261
            ||||||||||||||||||||
Sbjct: 6599 cagcaatttctctcctgact 6580



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 142      gaaaccatgcatatttttct 161
                ||||||||||||||||||||
Sbjct: 15324313 gaaaccatgcatatttttct 15324294



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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    ttttctcttcctctgcaagg 213
              ||||||||||||||||||||
Sbjct: 933971 ttttctcttcctctgcaagg 933990



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>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1047_A06
          Length = 111673

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   gaaaccatgcatatttttct 161
             ||||||||||||||||||||
Sbjct: 31312 gaaaccatgcatatttttct 31293



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>dbj|AP004668.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0475E07
          Length = 139961

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    gaaaccatgcatatttttct 161
              ||||||||||||||||||||
Sbjct: 110326 gaaaccatgcatatttttct 110307


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,520,933
Number of Sequences: 3902068
Number of extensions: 3520933
Number of successful extensions: 67598
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67553
Number of HSP's gapped (non-prelim): 45
length of query: 326
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 304
effective length of database: 17,147,199,772
effective search space: 5212748730688
effective search space used: 5212748730688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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