Clone Name | rbastl09f03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 163 aaatccatctccaaacaaacag 184 |||||||||||||||||||||| Sbjct: 14236786 aaatccatctccaaacaaacag 14236765 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 163 aaatccatctccaaacaaacag 184 |||||||||||||||||||||| Sbjct: 14120143 aaatccatctccaaacaaacag 14120122
>dbj|AP006052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0067K15 Length = 160162 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 163 aaatccatctccaaacaaacag 184 |||||||||||||||||||||| Sbjct: 121667 aaatccatctccaaacaaacag 121646 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 163 aaatccatctccaaacaaacag 184 |||||||||||||||||||||| Sbjct: 5024 aaatccatctccaaacaaacag 5003
>dbj|AP003830.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1423_A11 Length = 98377 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 163 aaatccatctccaaacaaacag 184 |||||||||||||||||||||| Sbjct: 96102 aaatccatctccaaacaaacag 96081
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 ttgaaatgaatcgcaaaattt 245 ||||||||||||||||||||| Sbjct: 755746 ttgaaatgaatcgcaaaattt 755766
>gb|AC016705.4|AC016705 Homo sapiens BAC clone RP11-210M15 from 15, complete sequence Length = 177964 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 cagcctcttacaaccctgtga 202 ||||||||||||||||||||| Sbjct: 45462 cagcctcttacaaccctgtga 45482
>gb|BT017089.1| Zea mays clone EL01N0361B10.c mRNA sequence Length = 999 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 ggataagccaatcctagatcacat 319 |||||||||||||||||| ||||| Sbjct: 669 ggataagccaatcctagagcacat 646
>gb|DQ333812.1| Pachyhynobius shangchengensis mitochondrion, complete genome Length = 16394 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 gaactaaagtgctaattaaa 275 |||||||||||||||||||| Sbjct: 7138 gaactaaagtgctaattaaa 7119
>gb|AC129598.4| Mus musculus BAC clone RP23-283O5 from chromosome 18, complete sequence Length = 213381 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tgtacttagtgtaacatata 140 |||||||||||||||||||| Sbjct: 160590 tgtacttagtgtaacatata 160609
>gb|AC107756.9| Mus musculus chromosome 18, clone RP23-214K19, complete sequence Length = 216911 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 tgtacttagtgtaacatata 140 |||||||||||||||||||| Sbjct: 139505 tgtacttagtgtaacatata 139486
>gb|AC142223.10| Medicago truncatula clone mth2-5e21, complete sequence Length = 122763 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 239 aaaattttctataacatgaactaaagtg 266 ||||| |||||||||||| ||||||||| Sbjct: 41272 aaaatattctataacatggactaaagtg 41299
>gb|AC119417.17| Medicago truncatula clone mth1-6m23, complete sequence Length = 110254 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 239 aaaattttctataacatgaactaaagtg 266 ||||| |||||||||||| ||||||||| Sbjct: 77868 aaaatattctataacatggactaaagtg 77841
>emb|AL590490.11| Human DNA sequence from clone RP11-177F11 on chromosome 1 Contains part of the FMN2 gene for formin 2 and a novel gene, complete sequence Length = 51770 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 agcctcttacaaccctgtga 202 |||||||||||||||||||| Sbjct: 4781 agcctcttacaaccctgtga 4762
>emb|Y18134.1|SAC18134 Squalus acanthia complete mitochondrial genome Length = 16738 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 gaactaaagtgctaattaaa 275 |||||||||||||||||||| Sbjct: 7290 gaactaaagtgctaattaaa 7271
>emb|CR762439.7| Zebrafish DNA sequence from clone DKEY-261I20 in linkage group 13, complete sequence Length = 136285 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ccaaacaaaatccatctcca 175 |||||||||||||||||||| Sbjct: 117439 ccaaacaaaatccatctcca 117420
>gb|AC097524.2| Homo sapiens BAC clone RP11-604B8 from 4, complete sequence Length = 113613 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ttctataacatgaactaaag 264 |||||||||||||||||||| Sbjct: 14830 ttctataacatgaactaaag 14811
>gb|AC003036.1|AC003036 Homo sapiens Xp22 PAC RPCI1-108M6 (Roswell Park Cancer Center PAC library) complete sequence Length = 123203 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 accaccaaacaaaatccatc 171 |||||||||||||||||||| Sbjct: 17945 accaccaaacaaaatccatc 17964
>gb|AC103564.5| Homo sapiens BAC clone RP11-788A1 from 2, complete sequence Length = 106117 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 atgtacttagtgtaacatat 139 |||||||||||||||||||| Sbjct: 11126 atgtacttagtgtaacatat 11107
>gb|AC145543.3| Homo sapiens chromosome UNKNOWN clone RP11-1278L23, complete sequence Length = 221027 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 atgtacttagtgtaacatat 139 |||||||||||||||||||| Sbjct: 11805 atgtacttagtgtaacatat 11786
>gb|AC093724.3| Homo sapiens BAC clone RP11-1L5 from 2, complete sequence Length = 161617 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 atgtacttagtgtaacatat 139 |||||||||||||||||||| Sbjct: 92468 atgtacttagtgtaacatat 92449
>emb|AL749540.1|CNS08C9Q Human chromosome 14 DNA sequence Partial sequence from BAC R-183K10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 96308 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 atgtacttagtgtaacatat 139 |||||||||||||||||||| Sbjct: 69891 atgtacttagtgtaacatat 69872
>gb|AC157955.2| Gallus gallus BAC clone TAM31-4B17 from chromosome unknown, complete sequence Length = 181590 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 aattttctataacatgaact 260 |||||||||||||||||||| Sbjct: 172862 aattttctataacatgaact 172881
>gb|AC160642.2| Gallus gallus BAC clone CH261-121M12 from chromosome unknown, complete sequence Length = 200333 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 aattttctataacatgaact 260 |||||||||||||||||||| Sbjct: 65937 aattttctataacatgaact 65956
>dbj|AP000522.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region, clone:c4G1 Length = 37693 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 atgtacttagtgtaacatat 139 |||||||||||||||||||| Sbjct: 12392 atgtacttagtgtaacatat 12411 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,372,334 Number of Sequences: 3902068 Number of extensions: 3372334 Number of successful extensions: 68680 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68589 Number of HSP's gapped (non-prelim): 91 length of query: 333 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 311 effective length of database: 17,147,199,772 effective search space: 5332779129092 effective search space used: 5332779129092 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)