ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
2dbj|AP006052.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
3dbj|AP003830.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
4dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 42 1.1
5gb|AC016705.4|AC016705 Homo sapiens BAC clone RP11-210M15 from 1... 42 1.1
6gb|BT017089.1| Zea mays clone EL01N0361B10.c mRNA sequence 40 4.4
7gb|DQ333812.1| Pachyhynobius shangchengensis mitochondrion, comp... 40 4.4
8gb|AC129598.4| Mus musculus BAC clone RP23-283O5 from chromosome... 40 4.4
9gb|AC107756.9| Mus musculus chromosome 18, clone RP23-214K19, co... 40 4.4
10gb|AC142223.10| Medicago truncatula clone mth2-5e21, complete se... 40 4.4
11gb|AC119417.17| Medicago truncatula clone mth1-6m23, complete se... 40 4.4
12emb|AL590490.11| Human DNA sequence from clone RP11-177F11 on ch... 40 4.4
13emb|Y18134.1|SAC18134 Squalus acanthia complete mitochondrial ge... 40 4.4
14emb|CR762439.7| Zebrafish DNA sequence from clone DKEY-261I20 in... 40 4.4
15gb|AC097524.2| Homo sapiens BAC clone RP11-604B8 from 4, complet... 40 4.4
16gb|AC003036.1|AC003036 Homo sapiens Xp22 PAC RPCI1-108M6 (Roswel... 40 4.4
17gb|AC103564.5| Homo sapiens BAC clone RP11-788A1 from 2, complet... 40 4.4
18gb|AC145543.3| Homo sapiens chromosome UNKNOWN clone RP11-1278L2... 40 4.4
19gb|AC093724.3| Homo sapiens BAC clone RP11-1L5 from 2, complete ... 40 4.4
20emb|AL749540.1|CNS08C9Q Human chromosome 14 DNA sequence Partial... 40 4.4
21gb|AC157955.2| Gallus gallus BAC clone TAM31-4B17 from chromosom... 40 4.4
22gb|AC160642.2| Gallus gallus BAC clone CH261-121M12 from chromos... 40 4.4
23dbj|AP000522.1| Homo sapiens genomic DNA, chromosome 22q11.2, Ca... 40 4.4

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 163      aaatccatctccaaacaaacag 184
                ||||||||||||||||||||||
Sbjct: 14236786 aaatccatctccaaacaaacag 14236765



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 163      aaatccatctccaaacaaacag 184
                ||||||||||||||||||||||
Sbjct: 14120143 aaatccatctccaaacaaacag 14120122



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>dbj|AP006052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0067K15
          Length = 160162

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 163    aaatccatctccaaacaaacag 184
              ||||||||||||||||||||||
Sbjct: 121667 aaatccatctccaaacaaacag 121646



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 163  aaatccatctccaaacaaacag 184
            ||||||||||||||||||||||
Sbjct: 5024 aaatccatctccaaacaaacag 5003



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>dbj|AP003830.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1423_A11
          Length = 98377

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 163   aaatccatctccaaacaaacag 184
             ||||||||||||||||||||||
Sbjct: 96102 aaatccatctccaaacaaacag 96081



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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 225    ttgaaatgaatcgcaaaattt 245
              |||||||||||||||||||||
Sbjct: 755746 ttgaaatgaatcgcaaaattt 755766



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>gb|AC016705.4|AC016705 Homo sapiens BAC clone RP11-210M15 from 15, complete sequence
          Length = 177964

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 182   cagcctcttacaaccctgtga 202
             |||||||||||||||||||||
Sbjct: 45462 cagcctcttacaaccctgtga 45482



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>gb|BT017089.1| Zea mays clone EL01N0361B10.c mRNA sequence
          Length = 999

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 296 ggataagccaatcctagatcacat 319
           |||||||||||||||||| |||||
Sbjct: 669 ggataagccaatcctagagcacat 646



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>gb|DQ333812.1| Pachyhynobius shangchengensis mitochondrion, complete genome
          Length = 16394

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  gaactaaagtgctaattaaa 275
            ||||||||||||||||||||
Sbjct: 7138 gaactaaagtgctaattaaa 7119



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>gb|AC129598.4| Mus musculus BAC clone RP23-283O5 from chromosome 18, complete sequence
          Length = 213381

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    tgtacttagtgtaacatata 140
              ||||||||||||||||||||
Sbjct: 160590 tgtacttagtgtaacatata 160609



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>gb|AC107756.9| Mus musculus chromosome 18, clone RP23-214K19, complete sequence
          Length = 216911

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    tgtacttagtgtaacatata 140
              ||||||||||||||||||||
Sbjct: 139505 tgtacttagtgtaacatata 139486



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>gb|AC142223.10| Medicago truncatula clone mth2-5e21, complete sequence
          Length = 122763

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 239   aaaattttctataacatgaactaaagtg 266
             ||||| |||||||||||| |||||||||
Sbjct: 41272 aaaatattctataacatggactaaagtg 41299



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>gb|AC119417.17| Medicago truncatula clone mth1-6m23, complete sequence
          Length = 110254

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 239   aaaattttctataacatgaactaaagtg 266
             ||||| |||||||||||| |||||||||
Sbjct: 77868 aaaatattctataacatggactaaagtg 77841



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>emb|AL590490.11| Human DNA sequence from clone RP11-177F11 on chromosome 1 Contains
            part of the FMN2 gene for formin 2 and a novel gene,
            complete sequence
          Length = 51770

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  agcctcttacaaccctgtga 202
            ||||||||||||||||||||
Sbjct: 4781 agcctcttacaaccctgtga 4762



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>emb|Y18134.1|SAC18134 Squalus acanthia complete mitochondrial genome
          Length = 16738

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  gaactaaagtgctaattaaa 275
            ||||||||||||||||||||
Sbjct: 7290 gaactaaagtgctaattaaa 7271



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>emb|CR762439.7| Zebrafish DNA sequence from clone DKEY-261I20 in linkage group 13,
              complete sequence
          Length = 136285

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    ccaaacaaaatccatctcca 175
              ||||||||||||||||||||
Sbjct: 117439 ccaaacaaaatccatctcca 117420



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>gb|AC097524.2| Homo sapiens BAC clone RP11-604B8 from 4, complete sequence
          Length = 113613

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   ttctataacatgaactaaag 264
             ||||||||||||||||||||
Sbjct: 14830 ttctataacatgaactaaag 14811



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>gb|AC003036.1|AC003036 Homo sapiens Xp22 PAC RPCI1-108M6 (Roswell Park Cancer Center PAC
             library) complete sequence
          Length = 123203

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   accaccaaacaaaatccatc 171
             ||||||||||||||||||||
Sbjct: 17945 accaccaaacaaaatccatc 17964



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>gb|AC103564.5| Homo sapiens BAC clone RP11-788A1 from 2, complete sequence
          Length = 106117

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   atgtacttagtgtaacatat 139
             ||||||||||||||||||||
Sbjct: 11126 atgtacttagtgtaacatat 11107



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>gb|AC145543.3| Homo sapiens chromosome UNKNOWN clone RP11-1278L23, complete sequence
          Length = 221027

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   atgtacttagtgtaacatat 139
             ||||||||||||||||||||
Sbjct: 11805 atgtacttagtgtaacatat 11786



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>gb|AC093724.3| Homo sapiens BAC clone RP11-1L5 from 2, complete sequence
          Length = 161617

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   atgtacttagtgtaacatat 139
             ||||||||||||||||||||
Sbjct: 92468 atgtacttagtgtaacatat 92449



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>emb|AL749540.1|CNS08C9Q Human chromosome 14 DNA sequence Partial sequence from BAC R-183K10 of
             library RPCI-11 from chromosome 14 of Homo sapiens
             (Human), complete sequence
          Length = 96308

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   atgtacttagtgtaacatat 139
             ||||||||||||||||||||
Sbjct: 69891 atgtacttagtgtaacatat 69872



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>gb|AC157955.2| Gallus gallus BAC clone TAM31-4B17 from chromosome unknown, complete
              sequence
          Length = 181590

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    aattttctataacatgaact 260
              ||||||||||||||||||||
Sbjct: 172862 aattttctataacatgaact 172881



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>gb|AC160642.2| Gallus gallus BAC clone CH261-121M12 from chromosome unknown, complete
             sequence
          Length = 200333

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   aattttctataacatgaact 260
             ||||||||||||||||||||
Sbjct: 65937 aattttctataacatgaact 65956



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>dbj|AP000522.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:c4G1
          Length = 37693

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   atgtacttagtgtaacatat 139
             ||||||||||||||||||||
Sbjct: 12392 atgtacttagtgtaacatat 12411


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,372,334
Number of Sequences: 3902068
Number of extensions: 3372334
Number of successful extensions: 68680
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68589
Number of HSP's gapped (non-prelim): 91
length of query: 333
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 311
effective length of database: 17,147,199,772
effective search space: 5332779129092
effective search space used: 5332779129092
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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