>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA cleavage|
            complex II protein Pcf11) (Fragment)
          Length = 1654

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -3

Query: 300  KEEKEMSVPADENQT--TCALCQEPFEDFYSDETEEWMYKGAVYMNAPDGNIVGLQRSHL 127
            KE++  SVPA       +C +CQE FE ++ +E EEW  K A+ ++              
Sbjct: 1524 KEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVD-------------- 1569

Query: 126  GPIVHSKCQSGPSNIS 79
            G I H  C     N S
Sbjct: 1570 GKIYHPSCYEDYQNTS 1585

>YRR2_CAEEL (Q09345) Hypothetical protein R144.2|
          Length = 823

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -3

Query: 306 DKKEEKEMSVPADENQTT-CALCQEPFEDFYSDETEEWMYKGAVYMNAPDGNIVGLQRSH 130
           DK EE    V +   +T  C++C E F+++Y D+ E W  +  V ++             
Sbjct: 743 DKPEEPLPGVASSGVKTKECSVCGEKFDEYYDDDEETWRLRDTVNVH------------- 789

Query: 129 LGPIVHSKCQS 97
            G IVHS C S
Sbjct: 790 -GKIVHSACAS 799

>BUD14_YEAST (P27637) Bud site selection protein BUD14|
          Length = 707

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 309 PDKKEEKEMSVPADENQTTCALCQEPFEDFYSDE 208
           P ++ EK  S P +E Q+T +L     EDFY DE
Sbjct: 615 PKEELEKHHSTPEEEKQSTLSLHSSSEEDFYMDE 648

>YD14_SCHPO (Q10237) Hypothetical protein C4G9.04c in chromosome I|
          Length = 638

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -3

Query: 252 CALCQEPFEDFYSDETEEWMYKGAVYMNAPDGNIVGLQRSHLGPIVHSKCQSGPSNIS*V 73
           C +CQE F+  + +E E W++  AV       +   LQ        HS   +   N++  
Sbjct: 519 CPICQEKFQSVWHEEAEVWVFMNAVEEEGRIFHATCLQEVRPSENKHSNTNTSTQNLAEA 578

Query: 72  GVA 64
            V+
Sbjct: 579 AVS 581

>PCF11_YEAST (P39081) Protein PCF11 (protein 1 of CF I)|
          Length = 626

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 252 CALCQEPFEDFYSDETEEWMYKGAVYMN 169
           C +C+E     Y +E+ EW++K  + +N
Sbjct: 564 CPICKETVTGVYDEESGEWVWKNTIEVN 591

>TF2B1_ARATH (P48512) Transcription initiation factor IIB-1 (General|
           transcription factor TFIIB-1) (AtTFIIB1)
          Length = 312

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 306 DKKEEKEMSVPADENQTTCALCQEPFEDFYSDETEEW 196
           D K+E E+ V      T C+ C    E    DET EW
Sbjct: 8   DCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEW 44

>BIRC1_HUMAN (Q13075) Baculoviral IAP repeat-containing protein 1 (Neuronal|
            apoptosis inhibitory protein)
          Length = 1403

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
 Frame = +1

Query: 112  MDNRPQMRPLETNNITIRCIHVNCTFVHPLFS-------FIAVEILKWLLT*STCCLVLI 270
            +DN P ++ L+ +     CI    T V  L          I + +L WLL      L+ +
Sbjct: 1317 LDNMPNLQELDISRHFTECIKAQATTVKSLSQCVLRLPRLIRLNMLSWLLDADDIALLNV 1376

Query: 271  GRNRH 285
             + RH
Sbjct: 1377 MKERH 1381

>VE1_HPV18 (P06789) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 657

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 198 WMYKGAVYMNAPDGNIVGLQRSHLGPIVHSKC 103
           W Y      NA DGN + + R H  P++  KC
Sbjct: 536 WTYFDTYMRNALDGNPISIDRKH-KPLIQLKC 566

>ISPH_STRCO (Q9FBM1) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 338

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -3

Query: 189 KGAVYMN----APDGNIVGLQRSHLGPIVHSKCQSG 94
           KGA+++      P+GNIV      + P+VH + + G
Sbjct: 61  KGAIFVERTEEVPEGNIVMFSAHGVAPVVHEEAERG 96

>KELC_DROME (Q04652) Ring canal kelch protein [Contains: Kelch short protein]|
          Length = 1477

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 159  GNIVGLQRSHLGPIVHSKCQSGPSNIS*VGVAGEYLCN 46
            G+   L  SH G + H +  +  S ++  GVAG   CN
Sbjct: 989  GHYAVLGHSHFGTVGHIRLNANGSGVAAPGVAGTGTCN 1026

>VGNB_RCMV (P35930) Genome polyprotein B (RNA1 polyprotein) [Contains:|
           Protease cofactor (32 kDa protein); Putative helicase
           (EC 3.6.1.-) (NTP-binding protein) (NTB)
           (Membrane-binding protein) (58 kDa protein); Viral
           genome-linked protein (VPg); Picornain
          Length = 1864

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 46  IAQILTSYAHLRNITGARLTFGMDNRPQMRPLET 147
           I  I TSY HLRN  G  LT   D   ++  LET
Sbjct: 347 INSIATSYGHLRNFAGRVLTMLRDFAWKILGLET 380

>TF2B_ORYSA (Q8W0W3) Transcription initiation factor IIB (General transcription|
           factor TFIIB)
          Length = 312

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -3

Query: 309 PDKKEEKEMSVPADENQTTCALCQEPFEDFYSDETEEW 196
           PD K+  E++       T C  C    E    DET EW
Sbjct: 7   PDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEW 44

>VE6_HPV42 (P27229) Protein E6|
          Length = 150

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 294 EKEMSVPADENQTTCALCQEP 232
           EKE  +  +E Q  CALCQ+P
Sbjct: 90  EKETGLLLEEQQIRCALCQKP 110

>Y1240_CLOAB (Q97JN3) Maf-like protein CAC1240|
          Length = 199

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 267 ENQTTCALCQEPFEDFYSDETEEWMYKGAVYMNAPDGNIVG 145
           E++    LC+   EDFY DE E ++  G   + + DG I+G
Sbjct: 50  ESKAKSTLCRIESEDFYKDEDEVFII-GCDTVVSIDGKILG 89

>ZN700_HUMAN (Q9H0M5) Zinc finger protein 700|
          Length = 742

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 303 KKEEKEMSVPADENQTTCALCQEPFEDFYSDETEEWMYKG 184
           ++ EK + +P+ E    C++C++ F    S +T E  + G
Sbjct: 493 ERTEKHIRMPSGERPYKCSICEKGFYSAKSFQTHEKTHTG 532


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,290,373
Number of Sequences: 219361
Number of extensions: 1123106
Number of successful extensions: 2915
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2915
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)