ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YUES_CAEEL (P90859) Hypothetical RING finger protein F26E4.11 in... 30 2.1
2TA2R7_PAPHA (Q646F6) Taste receptor type 2 member 7 (T2R7) 28 6.1
3BRLA_EMENI (P10069) Regulatory protein brlA (Bristle A protein) 28 7.9

>YUES_CAEEL (P90859) Hypothetical RING finger protein F26E4.11 in chromosome I|
          Length = 564

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 36  ISFGTLFLFYLHIVLTCNLCRFQKRLT 116
           ISF +LFLF++ I +T  + RFQ  LT
Sbjct: 186 ISFLSLFLFFVSIAMTFLISRFQHHLT 212



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>TA2R7_PAPHA (Q646F6) Taste receptor type 2 member 7 (T2R7)|
          Length = 317

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +3

Query: 9   TSVLISTCTISFGTLFL-FYLHI---VLTCNLCRFQKRLTHVT*RNPAQNVLFLWIAYHM 176
           T +  S C +SF  L L  + HI    L+   CR      HV       + LFL+IAY++
Sbjct: 190 TLLPFSVCLVSFFLLILSLWRHIRRMQLSATGCRDPSTEAHVRALKAVISFLFLFIAYYL 249

Query: 177 YHVVA 191
             ++A
Sbjct: 250 SFLIA 254



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>BRLA_EMENI (P10069) Regulatory protein brlA (Bristle A protein)|
          Length = 432

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 176 HVVSNPKKKNVLCWVPSCY 120
           H+ S+ K+K  +CWVP C+
Sbjct: 340 HMKSHSKEKPHVCWVPGCH 358


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,128,328
Number of Sequences: 219361
Number of extensions: 742242
Number of successful extensions: 1791
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1791
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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