ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl09e06 |
|---|---|
| Clone Library Name | barley_pub |
>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)| (Fertility restorer) (Restorer for CMS) Length = 791 Score = 58.2 bits (139), Expect = 5e-09 Identities = 28/64 (43%), Positives = 39/64 (60%) Frame = -3 Query: 325 LIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHIRG 146 LI+G C G M+EA+KLL M+ + PN VTY TLI GY + M++ L+ EM G Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576 Query: 145 LLPE 134 + P+ Sbjct: 577 VSPD 580 Score = 49.7 bits (117), Expect = 2e-06 Identities = 25/69 (36%), Positives = 38/69 (55%) Frame = -3 Query: 325 LIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHIRG 146 ++HG C+ G +EAI L +M + V+P+ VTY L+ + G E K+++ M RG Sbjct: 272 ILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRG 331 Query: 145 LLPEANFTG 119 L PE G Sbjct: 332 LKPEITTYG 340 Score = 47.8 bits (112), Expect = 7e-06 Identities = 26/63 (41%), Positives = 34/63 (53%) Frame = -3 Query: 325 LIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHIRG 146 +I C +G + E+ KL + M+ V PN +TY TLI GY G M E KL + M G Sbjct: 482 IIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541 Query: 145 LLP 137 L P Sbjct: 542 LKP 544 Score = 47.4 bits (111), Expect = 9e-06 Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Frame = -3 Query: 331 SILIHGLCTQGYMEEAIKLLDQMIENN---VDPNYVTYWTLIQGYVRCGNMKEISKLYNE 161 +IL+ GLC + +EA++LL M ++ P+ V+Y T+I G+ + G+ + Y+E Sbjct: 162 NILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHE 221 Query: 160 MHIRGLLPE 134 M RG+LP+ Sbjct: 222 MLDRGILPD 230 Score = 45.4 bits (106), Expect = 3e-05 Identities = 24/66 (36%), Positives = 35/66 (53%) Frame = -3 Query: 331 SILIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHI 152 S+L+ LC G EA K+ D M + + P TY TL+QGY G + E+ L + M Sbjct: 305 SLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR 364 Query: 151 RGLLPE 134 G+ P+ Sbjct: 365 NGIHPD 370 Score = 42.7 bits (99), Expect = 2e-04 Identities = 22/71 (30%), Positives = 38/71 (53%) Frame = -3 Query: 325 LIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHIRG 146 L+ G T+G + E LLD M+ N + P++ + LI Y + G + + ++++M +G Sbjct: 342 LLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 401 Query: 145 LLPEANFTGHV 113 L P A G V Sbjct: 402 LNPNAVTYGAV 412 Score = 42.7 bits (99), Expect = 2e-04 Identities = 20/64 (31%), Positives = 37/64 (57%) Frame = -3 Query: 325 LIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHIRG 146 +I LC M++A+++L+ M++N V P+ +TY +++ GY G KE +M G Sbjct: 237 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDG 296 Query: 145 LLPE 134 + P+ Sbjct: 297 VEPD 300 Score = 40.8 bits (94), Expect = 8e-04 Identities = 19/57 (33%), Positives = 30/57 (52%) Frame = -3 Query: 313 LCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHIRGL 143 LC G +E+A+ +QMI+ + P + Y +LI G C + +L EM RG+ Sbjct: 416 LCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 472 Score = 37.0 bits (84), Expect = 0.012 Identities = 18/55 (32%), Positives = 29/55 (52%) Frame = -3 Query: 331 SILIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLY 167 S LI+G C ME+A+ L +M + V P+ +TY ++QG + +LY Sbjct: 550 STLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 604 Score = 36.6 bits (83), Expect = 0.016 Identities = 19/65 (29%), Positives = 35/65 (53%) Frame = -3 Query: 331 SILIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHI 152 SILI QG +++A+ + +M + ++PN VTY +I + G +++ + +M Sbjct: 375 SILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434 Query: 151 RGLLP 137 GL P Sbjct: 435 EGLSP 439 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/65 (21%), Positives = 31/65 (47%) Frame = -3 Query: 331 SILIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHI 152 +I++HGLC ++A+++ + ++ T+ +I ++ G E L+ Sbjct: 620 NIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSS 679 Query: 151 RGLLP 137 GL+P Sbjct: 680 NGLVP 684
>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915| Length = 463 Score = 40.4 bits (93), Expect = 0.001 Identities = 23/66 (34%), Positives = 34/66 (51%) Frame = -3 Query: 331 SILIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHI 152 +I + LC +E+A L+ I VDP+ VTY TLI GY R ++E + M Sbjct: 17 NICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRD 76 Query: 151 RGLLPE 134 G+ P+ Sbjct: 77 AGIRPD 82 Score = 35.4 bits (80), Expect = 0.036 Identities = 19/62 (30%), Positives = 35/62 (56%) Frame = -3 Query: 331 SILIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHI 152 +ILI+GLC + A +L ++ ++ PN VTY T+++ Y + ++ +L+ EM Sbjct: 192 NILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKR 251 Query: 151 RG 146 G Sbjct: 252 EG 253 Score = 34.3 bits (77), Expect = 0.080 Identities = 18/67 (26%), Positives = 33/67 (49%) Frame = -3 Query: 331 SILIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHI 152 ++L+ LC GY++ A++L +M ++ P +TY LI G + + + E+ Sbjct: 158 NVLLDALCKCGYIDNALELFKEM-QSRFKPELMTYNILINGLCKSRRVGTAKWMLTELKK 216 Query: 151 RGLLPEA 131 G P A Sbjct: 217 SGYTPNA 223 Score = 33.1 bits (74), Expect = 0.18 Identities = 20/64 (31%), Positives = 33/64 (51%) Frame = -3 Query: 325 LIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHIRG 146 LI G C +EEA + +M + + P+ TY +LI G R + + L++EM G Sbjct: 54 LISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWG 113 Query: 145 LLPE 134 + P+ Sbjct: 114 IYPD 117 Score = 32.0 bits (71), Expect = 0.39 Identities = 15/61 (24%), Positives = 31/61 (50%) Frame = -3 Query: 325 LIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHIRG 146 ++ L G +EA + + +++ + V+Y TL+ Y + GN+ + L E+ RG Sbjct: 264 VVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRG 323 Query: 145 L 143 + Sbjct: 324 M 324
>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)| (Leucine-rich PPR motif-containing protein) Length = 1273 Score = 37.0 bits (84), Expect = 0.012 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 5/63 (7%) Frame = -3 Query: 274 LDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHIRGL-LPEANF----TGHVK 110 L +M E N+ PN VTY LI Y G+++ SK+ M + L + EA F TGH + Sbjct: 64 LAKMEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHAR 123 Query: 109 HAD 101 D Sbjct: 124 AGD 126
>PTCD1_HUMAN (O75127) Pentatricopeptide repeat protein 1| Length = 700 Score = 31.6 bits (70), Expect = 0.52 Identities = 21/74 (28%), Positives = 39/74 (52%) Frame = -3 Query: 331 SILIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHI 152 ++LI G GY+++A L +QM + +++P+ TY L V + + S L + + + Sbjct: 177 TVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFN--VCAESPWKDSALQSALKL 234 Query: 151 RGLLPEANFTGHVK 110 R L NF ++K Sbjct: 235 RQQLQAKNFELNLK 248
>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I| Length = 1261 Score = 31.2 bits (69), Expect = 0.67 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = -3 Query: 289 EAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEM 158 E KL +M E+ + P VTY T+I R G+ KL+ EM Sbjct: 944 ECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEM 987 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/61 (29%), Positives = 29/61 (47%) Frame = -3 Query: 286 AIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHIRGLLPEANFTGHVKH 107 A+ + ++ +NV P+ Y ++ R E KL+ EM GLLP + G V + Sbjct: 910 ALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVIN 969 Query: 106 A 104 A Sbjct: 970 A 970
>PTCD1_MOUSE (Q8C2E4) Pentatricopeptide repeat protein 1| Length = 695 Score = 30.8 bits (68), Expect = 0.88 Identities = 20/74 (27%), Positives = 39/74 (52%) Frame = -3 Query: 331 SILIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHI 152 ++LI G GY+++A +L + M + +++P+ TY L V + + S L + + + Sbjct: 175 TVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFN--VCAESPWKDSALQSALKL 232 Query: 151 RGLLPEANFTGHVK 110 R L NF ++K Sbjct: 233 RQQLQARNFQLNLK 246
>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1| Length = 698 Score = 30.0 bits (66), Expect = 1.5 Identities = 21/72 (29%), Positives = 37/72 (51%) Frame = -3 Query: 325 LIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCGNMKEISKLYNEMHIRG 146 LI G GY+++A L +QM + +++P+ TY L V + + S L + + +R Sbjct: 177 LIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFN--VCAESPWKDSALQSALKLRQ 234 Query: 145 LLPEANFTGHVK 110 L NF ++K Sbjct: 235 QLQAKNFELNLK 246
>GALT5_HUMAN (Q7Z7M9) Polypeptide N-acetylgalactosaminyltransferase 5 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 5) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 5) (Polypeptide GalNAc transferase 5) (GalNAc-T5) (pp-GaNTase 5) Length = 940 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -3 Query: 187 KEISKLYNEMHIRGLLPEANFTGHVKHADPVVSCKQPE 74 K S YN+ HI+ LLPE + T V D +S + P+ Sbjct: 399 KAPSTEYNQSHIKALLPEDSGTHQVLRIDVTLSPRDPK 436
>CARA_LISMO (Q8Y664) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase glutamine chain) Length = 363 Score = 28.9 bits (63), Expect = 3.3 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = +1 Query: 139 AEVHGYASHCKAW--KSLSYYHIEHNLESVSNM*HNLDPHYSQSFDPEA 279 A+ HGYA + L HIE N E+V + H P Y+ + PEA Sbjct: 287 AQNHGYAVEKDSLIGTDLKVTHIELNDETVEGLAHKEYPAYTVQYHPEA 335
>CARA_LISMF (Q71YI0) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase glutamine chain) Length = 363 Score = 28.9 bits (63), Expect = 3.3 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = +1 Query: 139 AEVHGYASHCKAW--KSLSYYHIEHNLESVSNM*HNLDPHYSQSFDPEA 279 A+ HGYA + L HIE N E+V + H P Y+ + PEA Sbjct: 287 AQNHGYAVEKDSLIGTDLKVTHIELNDETVEGLAHKEYPAYTVQYHPEA 335
>POM34_YEAST (Q12445) Nucleoporin POM34 (Nuclear pore protein POM34) (Pore| membrane protein POM34) Length = 299 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 8/55 (14%) Frame = +1 Query: 49 KVSTLYIYILAVYNLQPDLHVLHVQ*NWLQAEVHGYASHC--------KAWKSLS 189 ++S +++Y+L + L+ + H +WL AE+ Y H WK LS Sbjct: 97 RLSRIHLYMLTFHTLKKANIIYHTTFSWLNAELLDYLFHLLISLNILFSLWKLLS 151
>CHO2_SCHPO (O74787) Phosphatidylethanolamine N-methyltransferase (EC 2.1.1.17)| (PEAMT) Length = 905 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Frame = +1 Query: 76 LAVYNLQPDLHVLHVQ*N----WLQAEVHGYASHCKAWKSLS 189 + +Y L + L+ Q + W + +GY SHC + KSLS Sbjct: 724 IGLYKLSDNASDLYTQTSSEGRWSAIDANGYTSHCSSIKSLS 765
>FREM1_HUMAN (Q5H8C1) FRAS1-related extracellular matrix protein 1 precursor| (QBRICK protein) Length = 2179 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/37 (29%), Positives = 24/37 (64%) Frame = +1 Query: 28 KVYTHKQKVSTLYIYILAVYNLQPDLHVLHVQ*NWLQ 138 ++Y ++ + + +IL VY L+PD +++H+ N L+ Sbjct: 107 RLYRFTERDTFIETFILWVYLLEPDCNIIHMSNNVLE 143
>CARA_LACLC (Q9L4N5) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase glutamine chain) Length = 357 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Frame = +1 Query: 148 HGYA-SHCKAWKSLSYYHIEHNLESVSNM*HNLDPHYSQSFDPEA 279 HGYA S + L H+E N SV + H P +S F P+A Sbjct: 290 HGYAVSSENLPEDLMITHVEINDNSVEGVRHKYFPAFSVQFHPDA 334
>CARA_LACLA (Q9CF80) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase glutamine chain) Length = 357 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +1 Query: 148 HGYA-SHCKAWKSLSYYHIEHNLESVSNM*HNLDPHYSQSFDPEA 279 HGYA S + L H+E N +SV + H P +S F P+A Sbjct: 290 HGYAVSSENLPEDLMITHVEINDDSVEGVRHKHFPAFSVQFHPDA 334
>YEAH_SALTI (Q8Z6E7) UPF0229 protein yeaH| Length = 428 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -3 Query: 295 MEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCG-NMKEISKLYNEMHIRGLLPEANFTG 119 + A+KL+D++++ DP + W + G N + S L +E+ + LLP + Sbjct: 318 VSSALKLMDEVVKERYDP---SQWNIYAAQASDGDNWADDSPLCHEILAKKLLPVVRYYS 374 Query: 118 HVK 110 +++ Sbjct: 375 YIE 377
>DICER_HUMAN (Q9UPY3) Endoribonuclease Dicer (EC 3.1.26.-) (Helicase with RNase| motif) (Helicase-MOI) Length = 1912 Score = 27.7 bits (60), Expect = 7.4 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 13/95 (13%) Frame = -3 Query: 325 LIHGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGY--------VRCGNMKEISKL 170 +++G C +EE I+ L++++++N + T ++ Y V CG + S L Sbjct: 199 ILNGKCDPEELEEKIQKLEKILKSNAET--ATDLVVLDRYTSQPCEIVVDCGPFTDRSGL 256 Query: 169 YNEMHIR-----GLLPEANFTGHVKHADPVVSCKQ 80 Y + + + + N + H K D + KQ Sbjct: 257 YERLLMELEEALNFINDCNISVHSKERDSTLISKQ 291
>YEAH_SALTY (Q8ZPW3) UPF0229 protein yeaH| Length = 428 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = -3 Query: 295 MEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCG-NMKEISKLYNEMHIRGLLPEANFTG 119 + A+KL+D++++ DP W + G N + S L +E+ + LLP + Sbjct: 318 VSSALKLMDEVVKERYDPG---QWNIYAAQASDGDNWADDSPLCHEILAKKLLPVVRYYS 374 Query: 118 HVK 110 +++ Sbjct: 375 YIE 377
>PT309_YEAST (P32522) Protein PET309, mitochondrial precursor| Length = 965 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = -3 Query: 244 PNYVTYWTLIQGYVRCGNMKEISKLYNEMHIRGLLP 137 P+ Y L+ R G + ++KLY ++ RG++P Sbjct: 344 PSIQHYGILMYTMARIGELDSVNKLYTQLLRRGMIP 379 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,576,222 Number of Sequences: 219361 Number of extensions: 924449 Number of successful extensions: 2586 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2505 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2584 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
