ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl09e03 |
|---|---|
| Clone Library Name | barley_pub |
>RDRP_PVXCP (P22591) RNA replication protein (165 kDa protein) (ORF 1 protein)| [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] Length = 1456 Score = 33.9 bits (76), Expect = 0.099 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%) Frame = +1 Query: 184 QPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSSQ--QRLDS 324 +P+ + LDH+ Q C S++S+A +++ INT NSS ++LDS Sbjct: 930 KPKVQIVLDHNTQVCSANVMYSALSRATDRIHFINTSANSSAFWEKLDS 978
>RDRP_PVXHB (Q07630) RNA replication protein (165 kDa protein) (ORF 1 protein)| [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] Length = 1456 Score = 32.7 bits (73), Expect = 0.22 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%) Frame = +1 Query: 184 QPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSSQ--QRLDS 324 +P+ + LDH+ Q C +++S+A +++ INT NSS ++LDS Sbjct: 930 KPKVQIVLDHNTQVCSANVMYTALSRATDRIHFINTSANSSAFWEKLDS 978
>RDRP_PVXX3 (P17779) RNA replication protein (165 kDa protein) (ORF 1 protein)| [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] Length = 1456 Score = 32.3 bits (72), Expect = 0.29 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%) Frame = +1 Query: 184 QPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSSQ--QRLDS 324 +P+ + LDH+ Q C +++S+A +++ +NT NSS ++LDS Sbjct: 930 KPKVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDS 978
>RDRP_PVX (P09395) RNA replication protein (165 kDa protein) (ORF 1 protein)| [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] Length = 1456 Score = 32.3 bits (72), Expect = 0.29 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%) Frame = +1 Query: 184 QPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSSQ--QRLDS 324 +P+ + LDH+ Q C +++S+A +++ +NT NSS ++LDS Sbjct: 930 KPKVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDS 978
>IRA1_YEAST (P18963) Inhibitory regulator protein IRA1| Length = 3092 Score = 32.3 bits (72), Expect = 0.29 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +1 Query: 175 VNNQPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSSQQRLDSGRNSS 339 VNN + H S+ + TN +SISK K +N N S + +G ++S Sbjct: 368 VNNDHHYHLHHSSSSSKTTNTNSPNSISKTSIKQSSVNASGNVSPSQFSTGNDAS 422
>AROB_STRA5 (Q8DYU5) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 355 Score = 30.4 bits (67), Expect = 1.1 Identities = 26/115 (22%), Positives = 49/115 (42%) Frame = +2 Query: 17 YHICTSFSCYNNSRSCSSQMPSKQLSTSSTTAKFEFTAGSNKISQTEKRSYAE*TISHNG 196 YHI C++ + S + KQ+ T T + E G + ++Q +K+ + S Sbjct: 12 YHIKIEEGCFSEAGDWVSHLWQKQMITIITDSNVEILYGESLVNQLKKQGFTVHVFSFAA 71 Query: 197 KRTWITVHSSVTEPIGPPVSPRLYTSFIRLIHLTTAPSNVSILGEIVHLGDELTF 361 T+ V+ R+Y +F+ H+T + +++ G +V GD F Sbjct: 72 GEASKTLE----------VANRIY-AFLAKHHMTRSDGIIALGGGVV--GDLAAF 113
>AROB_STRA3 (Q8E4F3) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 355 Score = 30.0 bits (66), Expect = 1.4 Identities = 26/115 (22%), Positives = 48/115 (41%) Frame = +2 Query: 17 YHICTSFSCYNNSRSCSSQMPSKQLSTSSTTAKFEFTAGSNKISQTEKRSYAE*TISHNG 196 YHI C++ + S + KQ+ T T + E G + ++Q +K+ + S Sbjct: 12 YHIKIEEGCFSEAGDWVSHLWQKQMITIITDSNVEILYGESLVNQLKKQGFTVHVFSFAA 71 Query: 197 KRTWITVHSSVTEPIGPPVSPRLYTSFIRLIHLTTAPSNVSILGEIVHLGDELTF 361 T+ V+ R+Y F+ H+T + +++ G +V GD F Sbjct: 72 GEASKTLE----------VANRIY-GFLAKHHMTRSDGIIALGGGVV--GDLAAF 113
>AROB_STRA1 (Q3K0D4) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 355 Score = 30.0 bits (66), Expect = 1.4 Identities = 26/115 (22%), Positives = 48/115 (41%) Frame = +2 Query: 17 YHICTSFSCYNNSRSCSSQMPSKQLSTSSTTAKFEFTAGSNKISQTEKRSYAE*TISHNG 196 YHI C++ + S + KQ+ T T + E G + ++Q +K+ + S Sbjct: 12 YHIKIEEGCFSEAGDWVSHLWQKQMITIITDSNVEILYGESLVNQLKKQGFTVHVFSFAA 71 Query: 197 KRTWITVHSSVTEPIGPPVSPRLYTSFIRLIHLTTAPSNVSILGEIVHLGDELTF 361 T+ V+ R+Y F+ H+T + +++ G +V GD F Sbjct: 72 GEASKTLE----------VANRIY-GFLAKHHMTRSDGIIALGGGVV--GDLAAF 113
>DYHC_ASHGO (Q9C1M7) Dynein heavy chain, cytosolic (DYHC)| Length = 4083 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +1 Query: 241 WSSSISKALHKLYQINTPDNSSQQRL 318 ++S ISK LH ++ IN PDN +L Sbjct: 2871 FTSEISKNLHVIFNINDPDNRESTQL 2896
>LPLC3_HUMAN (P59826) Long palate, lung and nasal epithelium| carcinoma-associated protein 3 precursor (Ligand-binding protein RYA3) Length = 476 Score = 28.5 bits (62), Expect = 4.2 Identities = 19/56 (33%), Positives = 31/56 (55%) Frame = -1 Query: 240 IGSVTLLCTVIQVRFPLWLIVYSA*LLFSVCDILLLPAVNSNFAVVEEVLSCLLGI 73 +G ++L ++ PL+ +V +LF V LL P V+S VV E+L +LG+ Sbjct: 168 LGHISLFSGLLPT--PLFGVVEQ--MLFKVLPGLLCPVVDSVLGVVNELLGAVLGL 219
>PSIE_SALPA (Q5PL02) Protein psiE| Length = 136 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -2 Query: 353 VHLPDELFLPESRRCWELLSGVLI 282 VHL D LF+PE +EL+ G++I Sbjct: 40 VHLADALFVPEQASKYELVEGLVI 63
>KLHL5_HUMAN (Q96PQ7) Kelch-like protein 5| Length = 755 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -3 Query: 184 DCLLSVASLFSL*YFVASCCKF 119 +CLLS A L L V +CCKF Sbjct: 291 ECLLSTACLLQLSQVVEACCKF 312
>YL754_MIMIV (Q5UP08) Hypothetical protein L754| Length = 377 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +2 Query: 80 SKQLSTSSTTAKFEFTAGSNKISQTEKRSYAE*TISHNGKRTWITVH 220 S +L S T K++ NKI+ TE+ Y + I+ +T T H Sbjct: 243 SHELYDKSNTDKYKLYLKENKITPTEQDIYEDQQITKTDVKTLFTTH 289
>BOB1_YEAST (P38041) Protein BOB1 (BEM1-binding protein)| Length = 980 Score = 28.1 bits (61), Expect = 5.4 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 6/96 (6%) Frame = +2 Query: 44 YNNSRSCSSQMPSKQLSTSSTTAKFEFTAGSNKI---SQTEKRSYAE*---TISHNGKRT 205 + + S S SK S ++ K FT K+ S+++ SY+ + SH+ K Sbjct: 585 HRRNSSILSFFSSKSQSNPTSPTKQTFTIDPAKMTSHSRSQSNSYSHARSQSYSHSRK-- 642 Query: 206 WITVHSSVTEPIGPPVSPRLYTSFIRLIHLTTAPSN 313 HS VT P+ +SP S I L H T S+ Sbjct: 643 ----HSLVTSPLKTSLSPINSKSNIALAHSETPTSS 674
>CJ006_MOUSE (Q6P9P0) Protein C10orf6 homolog| Length = 1278 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/67 (20%), Positives = 31/67 (46%) Frame = +2 Query: 50 NSRSCSSQMPSKQLSTSSTTAKFEFTAGSNKISQTEKRSYAE*TISHNGKRTWITVHSSV 229 N+++C+ +P K SS+ + + S+K + ++ + +GK + ++HS Sbjct: 600 NAKNCTLPVPKKDKERSSSKERSGHSTESSKHKEHRAKTIKAVSNESSGKNSGGSLHSEY 659 Query: 230 TEPIGPP 250 P P Sbjct: 660 APPTASP 666
>NKX25_XENLA (P42583) Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E)| (XNkx-2.5) Length = 299 Score = 27.7 bits (60), Expect = 7.1 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%) Frame = +2 Query: 17 YHICTSFSCYNN-----SRSCS-SQMPSKQLSTSSTTAKFEFTAGSNKISQTEKRSYAE* 178 Y+ ++S Y+N S +CS S MPS Q TS+ F+ G QT + + Sbjct: 231 YNTYPAYSNYSNPACSGSYNCSYSSMPSMQ-PTSAGNNFMNFSVGDLNTVQTPIQQASSV 289 Query: 179 TISHNGKRTW 208 + H+G R W Sbjct: 290 SALHHGIRAW 299
>PSIE_SALTY (P0A279) Protein psiE (Mig-7)| Length = 136 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 353 VHLPDELFLPESRRCWELLSGVLI 282 VHL D LF PE +EL+ G++I Sbjct: 40 VHLADALFAPEQASKYELVEGLVI 63
>PSIE_SALTI (P0A280) Protein psiE| Length = 136 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 353 VHLPDELFLPESRRCWELLSGVLI 282 VHL D LF PE +EL+ G++I Sbjct: 40 VHLADALFAPEQASKYELVEGLVI 63
>PSIE_SALCH (Q57H01) Protein psiE| Length = 136 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 353 VHLPDELFLPESRRCWELLSGVLI 282 VHL D LF PE +EL+ G++I Sbjct: 40 VHLADALFAPEQASKYELVEGLVI 63
>SLAP_LACAC (P35829) S-layer protein precursor (Surface layer protein)| (SA-protein) Length = 444 Score = 27.3 bits (59), Expect = 9.3 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = +1 Query: 178 NNQPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSSQQRLD--SGRNSSSG 345 N+ Q ET++ + D+ +S + ++ +Y INT DNS+ D SG ++G Sbjct: 157 NSDNQTETNVSTLKVKLDQNGVASLTNVSIANVYAINTTDNSNVNFYDVTSGATVTNG 214 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,201,202 Number of Sequences: 219361 Number of extensions: 871511 Number of successful extensions: 2672 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2615 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2672 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
