ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl09e03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_507492.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1791_B03.42-1 mRNA Length = 3100 Score = 65.9 bits (33), Expect = 9e-08 Identities = 58/65 (89%), Gaps = 1/65 (1%) Strand = Plus / Minus Query: 74 atgcccagcaagcaactaagcacttcctcgactacagcaaaatttgaatttacagcagga 133 ||||||||||| |||||| | ||||||| |||||| ||||||| ||||||||||||||| Sbjct: 3024 atgcccagcaaacaactat-cgcttcctccactacatcaaaattcgaatttacagcagga 2966 Query: 134 agcaa 138 ||||| Sbjct: 2965 agcaa 2961
>ref|XM_506853.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1791_B03.42-1 mRNA Length = 3189 Score = 65.9 bits (33), Expect = 9e-08 Identities = 58/65 (89%), Gaps = 1/65 (1%) Strand = Plus / Minus Query: 74 atgcccagcaagcaactaagcacttcctcgactacagcaaaatttgaatttacagcagga 133 ||||||||||| |||||| | ||||||| |||||| ||||||| ||||||||||||||| Sbjct: 3025 atgcccagcaaacaactat-cgcttcctccactacatcaaaattcgaatttacagcagga 2967 Query: 134 agcaa 138 ||||| Sbjct: 2966 agcaa 2962
>ref|XM_466588.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2915 Score = 65.9 bits (33), Expect = 9e-08 Identities = 58/65 (89%), Gaps = 1/65 (1%) Strand = Plus / Minus Query: 74 atgcccagcaagcaactaagcacttcctcgactacagcaaaatttgaatttacagcagga 133 ||||||||||| |||||| | ||||||| |||||| ||||||| ||||||||||||||| Sbjct: 2751 atgcccagcaaacaactat-cgcttcctccactacatcaaaattcgaatttacagcagga 2693 Query: 134 agcaa 138 ||||| Sbjct: 2692 agcaa 2688
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 9e-08 Identities = 58/65 (89%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 74 atgcccagcaagcaactaagcacttcctcgactacagcaaaatttgaatttacagcagga 133 ||||||||||| |||||| | ||||||| |||||| ||||||| ||||||||||||||| Sbjct: 23568732 atgcccagcaaacaactat-cgcttcctccactacatcaaaattcgaatttacagcagga 23568790 Query: 134 agcaa 138 ||||| Sbjct: 23568791 agcaa 23568795
>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1791_B03 Length = 166214 Score = 65.9 bits (33), Expect = 9e-08 Identities = 58/65 (89%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 74 atgcccagcaagcaactaagcacttcctcgactacagcaaaatttgaatttacagcagga 133 ||||||||||| |||||| | ||||||| |||||| ||||||| ||||||||||||||| Sbjct: 134415 atgcccagcaaacaactat-cgcttcctccactacatcaaaattcgaatttacagcagga 134473 Query: 134 agcaa 138 ||||| Sbjct: 134474 agcaa 134478
>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1669_F01 Length = 140019 Score = 65.9 bits (33), Expect = 9e-08 Identities = 58/65 (89%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 74 atgcccagcaagcaactaagcacttcctcgactacagcaaaatttgaatttacagcagga 133 ||||||||||| |||||| | ||||||| |||||| ||||||| ||||||||||||||| Sbjct: 9832 atgcccagcaaacaactat-cgcttcctccactacatcaaaattcgaatttacagcagga 9890 Query: 134 agcaa 138 ||||| Sbjct: 9891 agcaa 9895
>dbj|AK121891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105C13, full insert sequence Length = 3190 Score = 65.9 bits (33), Expect = 9e-08 Identities = 58/65 (89%), Gaps = 1/65 (1%) Strand = Plus / Minus Query: 74 atgcccagcaagcaactaagcacttcctcgactacagcaaaatttgaatttacagcagga 133 ||||||||||| |||||| | ||||||| |||||| ||||||| ||||||||||||||| Sbjct: 3026 atgcccagcaaacaactat-cgcttcctccactacatcaaaattcgaatttacagcagga 2968 Query: 134 agcaa 138 ||||| Sbjct: 2967 agcaa 2963
>dbj|AK101873.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070G06, full insert sequence Length = 2915 Score = 65.9 bits (33), Expect = 9e-08 Identities = 58/65 (89%), Gaps = 1/65 (1%) Strand = Plus / Minus Query: 74 atgcccagcaagcaactaagcacttcctcgactacagcaaaatttgaatttacagcagga 133 ||||||||||| |||||| | ||||||| |||||| ||||||| ||||||||||||||| Sbjct: 2751 atgcccagcaaacaactat-cgcttcctccactacatcaaaattcgaatttacagcagga 2693 Query: 134 agcaa 138 ||||| Sbjct: 2692 agcaa 2688
>dbj|AK099539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013032G15, full insert sequence Length = 3101 Score = 65.9 bits (33), Expect = 9e-08 Identities = 58/65 (89%), Gaps = 1/65 (1%) Strand = Plus / Minus Query: 74 atgcccagcaagcaactaagcacttcctcgactacagcaaaatttgaatttacagcagga 133 ||||||||||| |||||| | ||||||| |||||| ||||||| ||||||||||||||| Sbjct: 3025 atgcccagcaaacaactat-cgcttcctccactacatcaaaattcgaatttacagcagga 2967 Query: 134 agcaa 138 ||||| Sbjct: 2966 agcaa 2962
>emb|CT025576.8| Mouse DNA sequence from clone RP23-286F8 on chromosome 16, complete sequence Length = 164971 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 136 caacaaaatatcacaaactgaaaag 160 ||||||||||||| ||||||||||| Sbjct: 145220 caacaaaatatcataaactgaaaag 145196
>emb|AL445216.6| Human DNA sequence from clone RP11-204N9 on chromosome 13 Contains the 3' end of the PCDH17 gene for protocadherin 17 (PCH68 PCDH68), complete sequence Length = 99292 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cacaaactgaaaagagaagct 167 ||||||||||||||||||||| Sbjct: 69707 cacaaactgaaaagagaagct 69727
>emb|AL133388.7| Human DNA sequence from clone RP1-257B21 on chromosome 6q11.1-13 Contains part of the COL19A1 gene for collagen XIX alpha 1 and a ribosomal protein L37 (RPL37) pseudogene, complete sequence Length = 88428 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 caacaaaatatcacaaactga 156 ||||||||||||||||||||| Sbjct: 79387 caacaaaatatcacaaactga 79407
>ref|XM_795217.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC584866 (LOC584866), mRNA Length = 1042 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 gatgtattatcacatttgcac 30 ||||||||||||||||||||| Sbjct: 540 gatgtattatcacatttgcac 560
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 140 aaaatatcacaaactgaaaagagaa 164 |||||||||||||||||| |||||| Sbjct: 2729877 aaaatatcacaaactgaacagagaa 2729853
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 140 aaaatatcacaaactgaaaagagaa 164 |||||||||||||||||| |||||| Sbjct: 2729821 aaaatatcacaaactgaacagagaa 2729797
>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145539 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 140 aaaatatcacaaactgaaaagagaa 164 |||||||||||||||||| |||||| Sbjct: 140570 aaaatatcacaaactgaacagagaa 140594
>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151878 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 140 aaaatatcacaaactgaaaagagaa 164 |||||||||||||||||| |||||| Sbjct: 98803 aaaatatcacaaactgaacagagaa 98779
>gb|AC152947.1| Mus musculus 10 BAC RP23-12H20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222139 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 18 atcacatttgcacaagtttttcctgtta 45 ||||||||| |||| ||||||||||||| Sbjct: 93063 atcacatttacacatgtttttcctgtta 93090
>gb|AC131079.11| Mus musculus chromosome 14, clone RP23-434L17, complete sequence Length = 203276 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 caacaaaatatcacaaactgaaaa 159 |||||| ||||||||||||||||| Sbjct: 134264 caacaacatatcacaaactgaaaa 134287
>gb|AF346289.1|AF346288S2 Mus musculus GA-binding protein alpha-subunit (Gabpa) gene, exon 6 Length = 1179 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 gtcctccagtatctccaagg 262 |||||||||||||||||||| Sbjct: 213 gtcctccagtatctccaagg 232
>gb|AC140314.2| Mus musculus BAC clone RP23-395L3 from chromosome 12, complete sequence Length = 191322 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 caaaatatcacaaactgaaa 158 |||||||||||||||||||| Sbjct: 145329 caaaatatcacaaactgaaa 145348
>gb|AC109271.10| Mus musculus chromosome 1, clone RP23-353I19, complete sequence Length = 221001 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 cacttggatcacagtgcaca 221 |||||||||||||||||||| Sbjct: 179086 cacttggatcacagtgcaca 179105
>gb|AC084158.2| Caenorhabditis elegans cosmid Y69A2AR, complete sequence Length = 188616 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 aaaatatcacaaactgaaaa 159 |||||||||||||||||||| Sbjct: 64250 aaaatatcacaaactgaaaa 64269
>gb|AC138312.3| Mus musculus BAC clone RP23-235K7 from chromosome 9, complete sequence Length = 176504 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 tacagcaaaatttgaattta 125 |||||||||||||||||||| Sbjct: 62256 tacagcaaaatttgaattta 62237
>gb|AC125094.5| Mus musculus BAC clone RP24-176L12 from chromosome 16, complete sequence Length = 170842 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 gatgtattatcacatttgcacaag 33 ||||||||||||||||| |||||| Sbjct: 169799 gatgtattatcacattttcacaag 169822
>gb|AC122287.4| Mus musculus BAC clone RP23-253A15 from 1, complete sequence Length = 226926 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 cacttggatcacagtgcaca 221 |||||||||||||||||||| Sbjct: 201188 cacttggatcacagtgcaca 201169
>emb|AL157895.8| Human DNA sequence from clone RP11-354E11 on chromosome 10 Contains the 5' end of a novel gene and a novel gene, complete sequence Length = 166317 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 atgaactcacattttcattt 367 |||||||||||||||||||| Sbjct: 150016 atgaactcacattttcattt 149997
>emb|AL109742.12|HSJ542O18 Human DNA sequence from clone RP4-542O18 on chromosome 1p32.3-34.1 Contains GSSs, complete sequence Length = 101453 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 caacaaaatatcacaaactg 155 |||||||||||||||||||| Sbjct: 50497 caacaaaatatcacaaactg 50478
>gb|AC164162.2| Mus musculus BAC clone RP23-253E17 from chromosome 16, complete sequence Length = 174250 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 gtcctccagtatctccaagg 262 |||||||||||||||||||| Sbjct: 21763 gtcctccagtatctccaagg 21744
>gb|AC060798.10| Homo sapiens chromosome 17, clone RP11-615P24, complete sequence Length = 171994 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 aagcaacaaaatatcacaaactga 156 ||||| |||||||||||||||||| Sbjct: 83726 aagcatcaaaatatcacaaactga 83749
>gb|AC096575.1| Homo sapiens BAC clone RP11-521E5 from 4, complete sequence Length = 180423 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 aacaaaatatcacaaactga 156 |||||||||||||||||||| Sbjct: 39068 aacaaaatatcacaaactga 39049
>gb|AC092295.2| Homo sapiens chromosome 19 clone CTD-2630F21, complete sequence Length = 165566 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 aacaaaatatcacaaactga 156 |||||||||||||||||||| Sbjct: 82883 aacaaaatatcacaaactga 82902
>dbj|AK162675.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930004C12 product:unclassifiable, full insert sequence Length = 3747 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 gtcctccagtatctccaagg 262 |||||||||||||||||||| Sbjct: 297 gtcctccagtatctccaagg 316
>dbj|AK053887.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130318F11 product:unclassifiable, full insert sequence Length = 1756 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 ctacagcaaaatttgaatttacag 128 ||||| |||||||||||||||||| Sbjct: 486 ctacatcaaaatttgaatttacag 463
>gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome 12, complete sequence Length = 166104 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 caaaatatcacaaactgaaa 158 |||||||||||||||||||| Sbjct: 159303 caaaatatcacaaactgaaa 159284
>gb|AC009243.3|AC009243 Genomic sequence for Arabidopsis thaliana BAC F28K19 from chromosome I, complete sequence Length = 110565 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 tttatcagattaatacacct 294 |||||||||||||||||||| Sbjct: 65589 tttatcagattaatacacct 65608
>gb|AC009756.9|AC009756 Homo sapiens, clone RP11-45P2, complete sequence Length = 178624 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 aacaaaatatcacaaactga 156 |||||||||||||||||||| Sbjct: 88649 aacaaaatatcacaaactga 88668
>gb|AC134868.3| Mus musculus BAC clone RP23-75E2 from chromosome 16, complete sequence Length = 206328 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 gatgtattatcacatttgcacaag 33 ||||||||||||||||| |||||| Sbjct: 202175 gatgtattatcacattttcacaag 202152
>dbj|AB012047.1| Arabidopsis thaliana gene for sulfate transporter, complete cds, clone:AST56 Length = 6114 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 tttatcagattaatacacct 294 |||||||||||||||||||| Sbjct: 1706 tttatcagattaatacacct 1687
>gb|AC132456.5| Mus musculus BAC clone RP23-134L6 from 1, complete sequence Length = 204402 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 agttcatctgggagatgaactcac 357 ||||||||||||| |||||||||| Sbjct: 126050 agttcatctgggatatgaactcac 126073
>dbj|AB090812.1| Anopheles gambiae retrotransposon RTAg3 DNA, complete sequence Length = 6448 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 acagcaaaatttgaatttac 126 |||||||||||||||||||| Sbjct: 583 acagcaaaatttgaatttac 602
>dbj|AP003679.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-634G3, complete sequences Length = 60000 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 aacaaaatatcacaaactga 156 |||||||||||||||||||| Sbjct: 37019 aacaaaatatcacaaactga 37038
>emb|AJ249412.1|MMU249412 Mus musculus partial PI3Kgamma gene for phosphoinositide 3-kinase gamma, 5'UTR Length = 2206 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 caaaatatcacaaactgaaa 158 |||||||||||||||||||| Sbjct: 1124 caaaatatcacaaactgaaa 1105
>emb|AL845292.4| Mouse DNA sequence from clone RP23-386I21 on chromosome 2, complete sequence Length = 186607 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 ctacagcaaaatttgaatttacag 128 ||||| |||||||||||||||||| Sbjct: 32436 ctacatcaaaatttgaatttacag 32413
>emb|AL772278.7| Mouse DNA sequence from clone RP23-416G5 on chromosome 4, complete sequence Length = 199565 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 caagtttttcctgttacaat 49 |||||||||||||||||||| Sbjct: 75590 caagtttttcctgttacaat 75571
>emb|AL833796.4| Mouse DNA sequence from clone RP23-361A12 on chromosome X, complete sequence Length = 160626 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 agatgaactcacattttcat 365 |||||||||||||||||||| Sbjct: 28002 agatgaactcacattttcat 27983 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,271,251 Number of Sequences: 3902068 Number of extensions: 4271251 Number of successful extensions: 88303 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88094 Number of HSP's gapped (non-prelim): 200 length of query: 372 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 350 effective length of database: 17,147,199,772 effective search space: 6001519920200 effective search space used: 6001519920200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
