ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 180 5e-43
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 60 1e-06
3emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.32
4emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.32
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 5.0
6gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosom... 38 5.0
7emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in ... 38 5.0
8emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, ... 38 5.0
9gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome... 38 5.0
10dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.0
11gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, comp... 38 5.0
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.0
13gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome... 38 5.0
14gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, compl... 38 5.0
15gb|AF172996.1|AF172996 Trypanosoma congolense glucose transporte... 38 5.0
16dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.0
17dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 5.0
18emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in... 38 5.0
19gb|AF162335.1|AF162335 Mytilus galloprovincialis antimicrobial p... 38 5.0
20gb|AF162334.1|AF162334 Mytilus galloprovincialis antimicrobial p... 38 5.0
21gb|AF032097.1|AF032097 Trypanosoma congolense glucose transporte... 38 5.0
22gb|AF032096.1|AF032096 Trypanosoma congolense glucose transporte... 38 5.0

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  180 bits (91), Expect = 5e-43
 Identities = 91/91 (100%)
 Strand = Plus / Minus

                                                                        
Query: 20   ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 79
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                           
Query: 80   agctgagctgagcttccgcatgccgatcaga 110
            |||||||||||||||||||||||||||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcaga 2806



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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 13   catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 62
            ||||||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050



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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    aaacaagggattttttctgca 54
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585



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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 31    gcaaaacaagggattttttct 51
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 28      tgggcaaaacaagggattt 46
               |||||||||||||||||||
Sbjct: 3842397 tgggcaaaacaagggattt 3842415



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>gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence
          Length = 187121

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 78    ccagctgagctgagcttcc 96
             |||||||||||||||||||
Sbjct: 93147 ccagctgagctgagcttcc 93129



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>emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in linkage group 4, complete
              sequence
          Length = 157981

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 31     gcaaaacaagggatttttt 49
              |||||||||||||||||||
Sbjct: 129429 gcaaaacaagggatttttt 129411



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>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence
          Length = 140774

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    gcaaaacaagggatttttt 49
             |||||||||||||||||||
Sbjct: 89166 gcaaaacaagggatttttt 89184



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>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11,
              complete sequence
          Length = 132151

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     tgggcaaaacaagggattt 46
              |||||||||||||||||||
Sbjct: 121021 tgggcaaaacaagggattt 121039



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 5        catcacaccatcgacttcattat 27
                |||||||||||||| ||||||||
Sbjct: 22022485 catcacaccatcgaattcattat 22022463



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>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence
          Length = 185162

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    agctgagctgagcttccgc 98
             |||||||||||||||||||
Sbjct: 29471 agctgagctgagcttccgc 29453



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 28      tgggcaaaacaagggattt 46
               |||||||||||||||||||
Sbjct: 3842508 tgggcaaaacaagggattt 3842526



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>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0015N19, complete sequence
          Length = 168430

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    tgggcaaaacaagggattt 46
             |||||||||||||||||||
Sbjct: 48870 tgggcaaaacaagggattt 48888



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>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence
          Length = 199128

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 80     agctgagctgagcttccgc 98
              |||||||||||||||||||
Sbjct: 101444 agctgagctgagcttccgc 101426



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>gb|AF172996.1|AF172996 Trypanosoma congolense glucose transporter (HT2) gene, complete cds
          Length = 3402

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   ggaacatcacaccatcgac 19
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691



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>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0635G10
          Length = 146728

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 5     catcacaccatcgacttcattat 27
             |||||||||||||| ||||||||
Sbjct: 64549 catcacaccatcgaattcattat 64527



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>dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P14, full
            insert sequence
          Length = 3941

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 28   tgggcaaaacaagggattt 46
            |||||||||||||||||||
Sbjct: 1147 tgggcaaaacaagggattt 1165



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>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete
              sequence
          Length = 227565

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 31     gcaaaacaagggatttttt 49
              |||||||||||||||||||
Sbjct: 225395 gcaaaacaagggatttttt 225377



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>gb|AF162335.1|AF162335 Mytilus galloprovincialis antimicrobial peptide precursor myticin B
           mRNA, complete cds
          Length = 681

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 12  ccatcgacttcattattgg 30
           |||||||||||||||||||
Sbjct: 271 ccatcgacttcattattgg 253



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>gb|AF162334.1|AF162334 Mytilus galloprovincialis antimicrobial peptide precursor myticin A
           mRNA, complete cds
          Length = 692

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 12  ccatcgacttcattattgg 30
           |||||||||||||||||||
Sbjct: 328 ccatcgacttcattattgg 310



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>gb|AF032097.1|AF032097 Trypanosoma congolense glucose transporter (TcoHT2) gene, complete
           cds
          Length = 3085

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   ggaacatcacaccatcgac 19
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691



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>gb|AF032096.1|AF032096 Trypanosoma congolense glucose transporter (TcoHT1) gene, complete
           cds
          Length = 2703

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   ggaacatcacaccatcgac 19
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 824,022
Number of Sequences: 3902068
Number of extensions: 824022
Number of successful extensions: 52429
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52340
Number of HSP's gapped (non-prelim): 89
length of query: 110
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 89
effective length of database: 17,151,101,840
effective search space: 1526448063760
effective search space used: 1526448063760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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