ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC123818.4| Mus musculus BAC clone RP24-266A12 from chromosom... 38 7.4
2gb|AC121841.3| Mus musculus BAC clone RP24-80D5 from chromosome ... 38 7.4
3gb|AC159971.4| Mus musculus chromosome 5, clone RP23-263G19, com... 38 7.4
4emb|AL357153.4|CNS05TDV Human chromosome 14 DNA sequence BAC C-2... 38 7.4

>gb|AC123818.4| Mus musculus BAC clone RP24-266A12 from chromosome 18, complete sequence
          Length = 169506

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      aagggttaaacccccaact 27
              |||||||||||||||||||
Sbjct: 155029 aagggttaaacccccaact 155011



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>gb|AC121841.3| Mus musculus BAC clone RP24-80D5 from chromosome 5, complete sequence
          Length = 199487

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 42     ggatttgcaccaagtcaat 60
              |||||||||||||||||||
Sbjct: 102112 ggatttgcaccaagtcaat 102094



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>gb|AC159971.4| Mus musculus chromosome 5, clone RP23-263G19, complete sequence
          Length = 163375

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 42   ggatttgcaccaagtcaat 60
            |||||||||||||||||||
Sbjct: 8105 ggatttgcaccaagtcaat 8087



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>emb|AL357153.4|CNS05TDV Human chromosome 14 DNA sequence BAC C-2540L5 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 209483

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 70     cggtgcatgtaacctatag 88
              |||||||||||||||||||
Sbjct: 158441 cggtgcatgtaacctatag 158423


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 930,817
Number of Sequences: 3902068
Number of extensions: 930817
Number of successful extensions: 80867
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80859
Number of HSP's gapped (non-prelim): 8
length of query: 154
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 132
effective length of database: 17,147,199,772
effective search space: 2263430369904
effective search space used: 2263430369904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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