ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl09d06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089N14, full insert sequence Length = 2913 Score = 182 bits (92), Expect = 6e-43 Identities = 170/196 (86%) Strand = Plus / Minus Query: 195 gttcagaggaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatca 254 |||||||| |||||||||||||| | ||||| || ||||| |||||||| ||||| ||| Sbjct: 2715 gttcagagaaagtatgtcaactgttgtttctttctggagcctccttcaccgtacaactca 2656 Query: 255 ttccattgcttcaactcacccattatggaaccttcagcagcaaaactcgccgccacctgg 314 ||||||||||||| |||||||||||| | |||||||||||||| || |||||||||||| Sbjct: 2655 ttccattgcttcagctcacccattattgttccttcagcagcaaagcttgccgccacctgg 2596 Query: 315 ttctttgcttctttcaaatctgccatgtttaatggcctcagaatgatctccttgtctttt 374 || |||||||||||||||||| |||||||| |||||| || |||||| || ||| || Sbjct: 2595 ttttttgcttctttcaaatctttcatgtttagtggccttagtatgatcgtctcgtccttc 2536 Query: 375 tctttcatcttcgaag 390 |||||||||||||||| Sbjct: 2535 tctttcatcttcgaag 2520 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 134 ctattttctcgtagttgtttgccatctattctactttccaaattatgttcatacact 190 |||||||| | | ||||||| || ||||||||| ||| ||||||||||||||||||| Sbjct: 2787 ctattttcacatggttgttttccgtctattctagttttcaaattatgttcatacact 2731
>ref|NM_188560.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2433 Score = 178 bits (90), Expect = 9e-42 Identities = 168/194 (86%) Strand = Plus / Minus Query: 197 tcagaggaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatcatt 256 |||||| |||||||||||||| | ||||| || ||||| |||||||| ||||| ||||| Sbjct: 2433 tcagagaaagtatgtcaactgttgtttctttctggagcctccttcaccgtacaactcatt 2374 Query: 257 ccattgcttcaactcacccattatggaaccttcagcagcaaaactcgccgccacctggtt 316 ||||||||||| |||||||||||| | |||||||||||||| || |||||||||||||| Sbjct: 2373 ccattgcttcagctcacccattattgttccttcagcagcaaagcttgccgccacctggtt 2314 Query: 317 ctttgcttctttcaaatctgccatgtttaatggcctcagaatgatctccttgtctttttc 376 |||||||||||||||||| |||||||| |||||| || |||||| || ||| || || Sbjct: 2313 ttttgcttctttcaaatctttcatgtttagtggccttagtatgatcgtctcgtccttctc 2254 Query: 377 tttcatcttcgaag 390 |||||||||||||| Sbjct: 2253 tttcatcttcgaag 2240
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 117 bits (59), Expect = 3e-23 Identities = 104/119 (87%) Strand = Plus / Plus Query: 195 gttcagaggaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatca 254 |||||||| |||||||||||||| | ||||| || ||||| |||||||| ||||| ||| Sbjct: 6970110 gttcagagaaagtatgtcaactgttgtttctttctggagcctccttcaccgtacaactca 6970169 Query: 255 ttccattgcttcaactcacccattatggaaccttcagcagcaaaactcgccgccacctg 313 ||||||||||||| |||||||||||| | |||||||||||||| || ||||||||||| Sbjct: 6970170 ttccattgcttcagctcacccattattgttccttcagcagcaaagcttgccgccacctg 6970228 Score = 77.8 bits (39), Expect = 2e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 308 cacctggttctttgcttctttcaaatctgccatgtttaatggcctcagaatgatctcctt 367 ||||||||| |||||||||||||||||| |||||||| |||||| || |||||| || Sbjct: 6970354 cacctggttttttgcttctttcaaatctttcatgtttagtggccttagtatgatcgtctc 6970413 Query: 368 gtctttttctttcatcttcgaag 390 ||| || |||||||||||||||| Sbjct: 6970414 gtccttctctttcatcttcgaag 6970436 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 134 ctattttctcgtagttgtttgccatctattctactttccaaattatgttcatacact 190 |||||||| | | ||||||| || ||||||||| ||| ||||||||||||||||||| Sbjct: 6970038 ctattttcacatggttgttttccgtctattctagttttcaaattatgttcatacact 6970094
>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492F05 Length = 159242 Score = 117 bits (59), Expect = 3e-23 Identities = 104/119 (87%) Strand = Plus / Plus Query: 195 gttcagaggaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatca 254 |||||||| |||||||||||||| | ||||| || ||||| |||||||| ||||| ||| Sbjct: 137834 gttcagagaaagtatgtcaactgttgtttctttctggagcctccttcaccgtacaactca 137893 Query: 255 ttccattgcttcaactcacccattatggaaccttcagcagcaaaactcgccgccacctg 313 ||||||||||||| |||||||||||| | |||||||||||||| || ||||||||||| Sbjct: 137894 ttccattgcttcagctcacccattattgttccttcagcagcaaagcttgccgccacctg 137952 Score = 77.8 bits (39), Expect = 2e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 308 cacctggttctttgcttctttcaaatctgccatgtttaatggcctcagaatgatctcctt 367 ||||||||| |||||||||||||||||| |||||||| |||||| || |||||| || Sbjct: 138078 cacctggttttttgcttctttcaaatctttcatgtttagtggccttagtatgatcgtctc 138137 Query: 368 gtctttttctttcatcttcgaag 390 ||| || |||||||||||||||| Sbjct: 138138 gtccttctctttcatcttcgaag 138160 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 134 ctattttctcgtagttgtttgccatctattctactttccaaattatgttcatacact 190 |||||||| | | ||||||| || ||||||||| ||| ||||||||||||||||||| Sbjct: 137762 ctattttcacatggttgttttccgtctattctagttttcaaattatgttcatacact 137818
>dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E07 Length = 159440 Score = 117 bits (59), Expect = 3e-23 Identities = 104/119 (87%) Strand = Plus / Plus Query: 195 gttcagaggaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatca 254 |||||||| |||||||||||||| | ||||| || ||||| |||||||| ||||| ||| Sbjct: 91928 gttcagagaaagtatgtcaactgttgtttctttctggagcctccttcaccgtacaactca 91987 Query: 255 ttccattgcttcaactcacccattatggaaccttcagcagcaaaactcgccgccacctg 313 ||||||||||||| |||||||||||| | |||||||||||||| || ||||||||||| Sbjct: 91988 ttccattgcttcagctcacccattattgttccttcagcagcaaagcttgccgccacctg 92046 Score = 77.8 bits (39), Expect = 2e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 308 cacctggttctttgcttctttcaaatctgccatgtttaatggcctcagaatgatctcctt 367 ||||||||| |||||||||||||||||| |||||||| |||||| || |||||| || Sbjct: 92172 cacctggttttttgcttctttcaaatctttcatgtttagtggccttagtatgatcgtctc 92231 Query: 368 gtctttttctttcatcttcgaag 390 ||| || |||||||||||||||| Sbjct: 92232 gtccttctctttcatcttcgaag 92254 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 134 ctattttctcgtagttgtttgccatctattctactttccaaattatgttcatacact 190 |||||||| | | ||||||| || ||||||||| ||| ||||||||||||||||||| Sbjct: 91856 ctattttcacatggttgttttccgtctattctagttttcaaattatgttcatacact 91912
>ref|NM_105085.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding AT1G64110 transcript variant AT1G64110.1 mRNA, complete cds Length = 2868 Score = 93.7 bits (47), Expect = 4e-16 Identities = 92/107 (85%) Strand = Plus / Minus Query: 222 ttcttcctcgagccgccttcaccatacaaatcattccattgcttcaactcacccattatg 281 ||||||||||| || ||||| |||||||| |||||||| ||||||||||| |||||| Sbjct: 2675 ttcttcctcgatcctccttctccatacaattcattccactgcttcaactctcccattccc 2616 Query: 282 gaaccttcagcagcaaaactcgccgccacctggttctttgcttcttt 328 | || ||||| |||||||||||||||||||| ||||| |||||||| Sbjct: 2615 gctccctcagccgcaaaactcgccgccacctgattcttggcttcttt 2569
>ref|NM_179511.1| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding AT1G64110 transcript variant AT1G64110.2 mRNA, complete cds Length = 2886 Score = 93.7 bits (47), Expect = 4e-16 Identities = 92/107 (85%) Strand = Plus / Minus Query: 222 ttcttcctcgagccgccttcaccatacaaatcattccattgcttcaactcacccattatg 281 ||||||||||| || ||||| |||||||| |||||||| ||||||||||| |||||| Sbjct: 2693 ttcttcctcgatcctccttctccatacaattcattccactgcttcaactctcccattccc 2634 Query: 282 gaaccttcagcagcaaaactcgccgccacctggttctttgcttcttt 328 | || ||||| |||||||||||||||||||| ||||| |||||||| Sbjct: 2633 gctccctcagccgcaaaactcgccgccacctgattcttggcttcttt 2587
>gb|AY056097.1| Arabidopsis thaliana At1g64110/F22C12_22 mRNA, complete cds Length = 2828 Score = 93.7 bits (47), Expect = 4e-16 Identities = 92/107 (85%) Strand = Plus / Minus Query: 222 ttcttcctcgagccgccttcaccatacaaatcattccattgcttcaactcacccattatg 281 ||||||||||| || ||||| |||||||| |||||||| ||||||||||| |||||| Sbjct: 2675 ttcttcctcgatcctccttctccatacaattcattccactgcttcaactctcccattccc 2616 Query: 282 gaaccttcagcagcaaaactcgccgccacctggttctttgcttcttt 328 | || ||||| |||||||||||||||||||| ||||| |||||||| Sbjct: 2615 gctccctcagccgcaaaactcgccgccacctgattcttggcttcttt 2569
>gb|BT006360.1| Arabidopsis thaliana At1g64110/F22C12_22 gene, complete cds Length = 2475 Score = 93.7 bits (47), Expect = 4e-16 Identities = 92/107 (85%) Strand = Plus / Minus Query: 222 ttcttcctcgagccgccttcaccatacaaatcattccattgcttcaactcacccattatg 281 ||||||||||| || ||||| |||||||| |||||||| ||||||||||| |||||| Sbjct: 2450 ttcttcctcgatcctccttctccatacaattcattccactgcttcaactctcccattccc 2391 Query: 282 gaaccttcagcagcaaaactcgccgccacctggttctttgcttcttt 328 | || ||||| |||||||||||||||||||| ||||| |||||||| Sbjct: 2390 gctccctcagccgcaaaactcgccgccacctgattcttggcttcttt 2344
>gb|AC007764.2|AC007764 Genomic sequence for Arabidopsis thaliana BAC F22C12 from chromosome I, complete sequence Length = 111222 Score = 79.8 bits (40), Expect = 6e-12 Identities = 79/92 (85%) Strand = Plus / Minus Query: 222 ttcttcctcgagccgccttcaccatacaaatcattccattgcttcaactcacccattatg 281 ||||||||||| || ||||| |||||||| |||||||| ||||||||||| |||||| Sbjct: 53982 ttcttcctcgatcctccttctccatacaattcattccactgcttcaactctcccattccc 53923 Query: 282 gaaccttcagcagcaaaactcgccgccacctg 313 | || ||||| |||||||||||||||||||| Sbjct: 53922 gctccctcagccgcaaaactcgccgccacctg 53891
>dbj|AB009055.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXC20 Length = 81575 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 196 ttcagaggaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatcat 255 |||| |||||||| || | ||| ||||| ||||| ||||| ||||| ||||||||||||| Sbjct: 39210 ttcaaaggaagtaagtgagctgttcctttttccttgagcctccttctccatacaaatcat 39269 Query: 256 tccattgctt 265 |||||||||| Sbjct: 39270 tccattgctt 39279
>gb|AC148655.4| Medicago truncatula clone mth2-61c11, complete sequence Length = 89884 Score = 56.0 bits (28), Expect = 9e-05 Identities = 67/80 (83%) Strand = Plus / Plus Query: 222 ttcttcctcgagccgccttcaccatacaaatcattccattgcttcaactcacccattatg 281 |||||||| || || ||||| ||||||||||||||||||| ||||||| |||||| Sbjct: 76899 ttcttccttgaacctccttctccatacaaatcattccattccttcaacctggtcattatt 76958 Query: 282 gaaccttcagcagcaaaact 301 || ||||| ||||||||||| Sbjct: 76959 gatccttctgcagcaaaact 76978 Score = 46.1 bits (23), Expect = 0.085 Identities = 38/43 (88%) Strand = Plus / Plus Query: 222 ttcttcctcgagccgccttcaccatacaaatcattccattgct 264 |||||||| || || ||||| |||||||||| ||||||||||| Sbjct: 85833 ttcttccttgaacctccttctccatacaaattattccattgct 85875
>ref|NM_118938.1| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding AT4G28000 mRNA, complete cds Length = 2181 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 219 tccttcttcctcgagccgccttcaccatacaaatcattccattgctt 265 ||||| ||||| ||||| ||||| ||||||||||||||||| ||||| Sbjct: 2159 tcctttttcctggagcctccttctccatacaaatcattccactgctt 2113
>emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68 Length = 199749 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 219 tccttcttcctcgagccgccttcaccatacaaatcattccattgctt 265 ||||| ||||| ||||| ||||| ||||||||||||||||| ||||| Sbjct: 44741 tcctttttcctggagcctccttctccatacaaatcattccactgctt 44695
>emb|AL035524.1|ATT13J8 Arabidopsis thaliana DNA chromosome 4, BAC clone T13J8 (ESSAII project) Length = 83693 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 219 tccttcttcctcgagccgccttcaccatacaaatcattccattgctt 265 ||||| ||||| ||||| ||||| ||||||||||||||||| ||||| Sbjct: 39605 tcctttttcctggagcctccttctccatacaaatcattccactgctt 39559
>ref|NM_116481.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding AT4G02480 mRNA, complete cds Length = 4287 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Minus Query: 221 cttcttcctcgagccgccttcaccatacaaatcattccattgct 264 |||||||||||| || ||||||||||||| || |||||||||| Sbjct: 3940 cttcttcctcgatcctccttcaccatacagctcgttccattgct 3897
>gb|AY090948.1| Arabidopsis thaliana unknown protein (At4g02480) mRNA, complete cds Length = 4184 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Minus Query: 221 cttcttcctcgagccgccttcaccatacaaatcattccattgct 264 |||||||||||| || ||||||||||||| || |||||||||| Sbjct: 3902 cttcttcctcgatcctccttcaccatacagctcgttccattgct 3859
>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6 Length = 194892 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Plus Query: 221 cttcttcctcgagccgccttcaccatacaaatcattccattgct 264 |||||||||||| || ||||||||||||| || |||||||||| Sbjct: 117756 cttcttcctcgatcctccttcaccatacagctcgttccattgct 117799
>gb|AC002412.3| Homo sapiens chromosome X clone bWXD105, complete sequence Length = 121623 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Minus Query: 363 tccttgtctttttctttcatcttc 386 |||||||||||||||||||||||| Sbjct: 100312 tccttgtctttttctttcatcttc 100289
>gb|AF069298.1|T14P8 Arabidopsis thaliana BAC T14P8 Length = 94536 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Minus Query: 221 cttcttcctcgagccgccttcaccatacaaatcattccattgct 264 |||||||||||| || ||||||||||||| || |||||||||| Sbjct: 28858 cttcttcctcgatcctccttcaccatacagctcgttccattgct 28815
>gb|AC004070.1|AC004070 Human Chromosome X, complete sequence Length = 110192 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Plus Query: 363 tccttgtctttttctttcatcttc 386 |||||||||||||||||||||||| Sbjct: 67131 tccttgtctttttctttcatcttc 67154
>gb|AC150980.20| Medicago truncatula clone mth2-165j9, complete sequence Length = 119548 Score = 46.1 bits (23), Expect = 0.085 Identities = 38/43 (88%) Strand = Plus / Minus Query: 222 ttcttcctcgagccgccttcaccatacaaatcattccattgct 264 |||||||| || || ||||| |||||||||| ||||||||||| Sbjct: 119028 ttcttccttgaacctccttctccatacaaattattccattgct 118986
>ref|XM_475967.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2568 Score = 44.1 bits (22), Expect = 0.33 Identities = 58/70 (82%) Strand = Plus / Minus Query: 203 gaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatcattccattg 262 |||||| |||| ||||| ||||||||| ||||| ||||| || || | || |||||||| Sbjct: 2562 gaagtacgtcagctgctgcttcttcctggagccaccttctccgtataggtcgttccattg 2503 Query: 263 cttcaactca 272 ||||| |||| Sbjct: 2502 cttcagctca 2493
>gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009C07, complete sequence Length = 148731 Score = 44.1 bits (22), Expect = 0.33 Identities = 58/70 (82%) Strand = Plus / Plus Query: 203 gaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatcattccattg 262 |||||| |||| ||||| ||||||||| ||||| ||||| || || | || |||||||| Sbjct: 27830 gaagtacgtcagctgctgcttcttcctggagccaccttctccgtataggtcgttccattg 27889 Query: 263 cttcaactca 272 ||||| |||| Sbjct: 27890 cttcagctca 27899
>gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0508G08, complete sequence Length = 141383 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 308 cacctggttctttgcttctttcaaat 333 |||||| ||||||||||||||||||| Sbjct: 36642 cacctgtttctttgcttctttcaaat 36617
>emb|AL080275.20|HSDJ149L1 Human DNA sequence from clone RP1-149L1 on chromosome 6q12-13 Contains the 5' end of the COL9A1 gene for collagen IX alpha 1 and a CpG island, complete sequence Length = 113983 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 122 aaagtaaccggcctattttctc 143 |||||||||||||||||||||| Sbjct: 16890 aaagtaaccggcctattttctc 16911
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.33 Identities = 58/70 (82%) Strand = Plus / Plus Query: 203 gaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatcattccattg 262 |||||| |||| ||||| ||||||||| ||||| ||||| || || | || |||||||| Sbjct: 28873537 gaagtacgtcagctgctgcttcttcctggagccaccttctccgtataggtcgttccattg 28873596 Query: 263 cttcaactca 272 ||||| |||| Sbjct: 28873597 cttcagctca 28873606 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 308 cacctggttctttgcttctttcaaat 333 |||||| ||||||||||||||||||| Sbjct: 12876096 cacctgtttctttgcttctttcaaat 12876071
>dbj|AK072537.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N21, full insert sequence Length = 2989 Score = 44.1 bits (22), Expect = 0.33 Identities = 58/70 (82%) Strand = Plus / Minus Query: 203 gaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatcattccattg 262 |||||| |||| ||||| ||||||||| ||||| ||||| || || | || |||||||| Sbjct: 2688 gaagtacgtcagctgctgcttcttcctggagccaccttctccgtataggtcgttccattg 2629 Query: 263 cttcaactca 272 ||||| |||| Sbjct: 2628 cttcagctca 2619
>dbj|AK065926.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050P04, full insert sequence Length = 2262 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 308 cacctggttctttgcttctttcaaat 333 |||||| ||||||||||||||||||| Sbjct: 1634 cacctgtttctttgcttctttcaaat 1609
>emb|Z35596.1|CEC30D11 Caenorhabditis elegans Cosmid C30D11, complete sequence Length = 30061 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 tctttttctttcatcttcgaa 389 ||||||||||||||||||||| Sbjct: 1060 tctttttctttcatcttcgaa 1080
>gb|AC148527.20| Medicago truncatula clone mth2-49g13, complete sequence Length = 107439 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 237 ccttcaccatacaaatcattccattgcttcaac 269 ||||| ||||||||||||||||| | ||||||| Sbjct: 102386 ccttctccatacaaatcattccactccttcaac 102418
>gb|AC005146.1| Homo sapiens 12 PAC RP1-157K6 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 157653 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 164 ctactttccaaattatgttcatacactta 192 |||||||||||||||| |||| ||||||| Sbjct: 126479 ctactttccaaattatattcagacactta 126507
>ref|NM_100170.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding AT1G02890 mRNA, complete cds Length = 4148 Score = 40.1 bits (20), Expect = 5.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 221 cttcttcctcgagccgccttcaccatacaaatcattccattgct 264 ||||||||||||||| ||||| ||||| | || |||||||||| Sbjct: 3844 cttcttcctcgagcctccttctccatagagctcgttccattgct 3801
>gb|AC113121.27| Mus musculus chromosome 8, clone RP23-347G12, complete sequence Length = 192877 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tcaactgctccttcttcctc 230 |||||||||||||||||||| Sbjct: 138665 tcaactgctccttcttcctc 138684
>gb|AC006794.3| Caenorhabditis elegans cosmid Y50D4A, complete sequence Length = 45292 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 tttcatgtgttttgacaaag 125 |||||||||||||||||||| Sbjct: 42279 tttcatgtgttttgacaaag 42298
>gb|AC104613.2| Drosophila melanogaster clone BACR06K07, complete sequence Length = 152934 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 acaagtacaacaaccaaaca 69 |||||||||||||||||||| Sbjct: 86715 acaagtacaacaaccaaaca 86734
>gb|AC147628.4| Mus musculus BAC clone RP24-476D20 from chromosome 14, complete sequence Length = 170642 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ttattagtgtacaagtacaa 59 |||||||||||||||||||| Sbjct: 90792 ttattagtgtacaagtacaa 90773
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 tctcgtagttgtttgccatctatt 163 |||||||||||||||||| ||||| Sbjct: 1032994 tctcgtagttgtttgccaactatt 1033017
>gb|AC009525.3| Arabidopsis thaliana chromosome I BAC F22D16 genomic sequence, complete sequence Length = 100239 Score = 40.1 bits (20), Expect = 5.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 221 cttcttcctcgagccgccttcaccatacaaatcattccattgct 264 ||||||||||||||| ||||| ||||| | || |||||||||| Sbjct: 47081 cttcttcctcgagcctccttctccatagagctcgttccattgct 47038
>emb|AL355604.11| Human DNA sequence from clone RP11-404E6 on chromosome 9 Contains a pseudogene similar to part of dipeptidylpeptidase 3 (DPP3), complete sequence Length = 183010 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 ctattctactttccaaattatgtt 182 ||||||| |||||||||||||||| Sbjct: 61083 ctattctcctttccaaattatgtt 61106
>emb|AL353603.8| Human DNA sequence from clone RP11-25E5 on chromosome 10, complete sequence Length = 30525 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 atctccttgtctttttcttt 379 |||||||||||||||||||| Sbjct: 27065 atctccttgtctttttcttt 27084
>gb|AC164524.5| Mus musculus BAC RP23-438F8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 180937 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaaggatctgctctgctctg 31 |||||||||||||||||||| Sbjct: 143079 aaaggatctgctctgctctg 143098
>gb|AF216667.4| Homo sapiens chromosome 8 clone CTC-543J1 map 8q24.3, complete sequence Length = 178780 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aacaaaatcaaaaggatctg 21 |||||||||||||||||||| Sbjct: 102500 aacaaaatcaaaaggatctg 102519
>gb|AC013432.4| Drosophila melanogaster, chromosome X, region 15F-15F, BAC clone BACR01K05, complete sequence Length = 162761 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 tattctactttccaaattat 179 |||||||||||||||||||| Sbjct: 47451 tattctactttccaaattat 47470
>gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold Length = 470930 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 tctttgcttctttcaaatct 335 |||||||||||||||||||| Sbjct: 300531 tctttgcttctttcaaatct 300550
>gb|AC140489.2| Mus musculus BAC clone RP24-144C10 from chromosome 1, complete sequence Length = 194368 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tcaactgctccttcttcctc 230 |||||||||||||||||||| Sbjct: 69390 tcaactgctccttcttcctc 69409
>gb|AF267286.1|AF267286 Acidianus sp. S5 sulfur oxygenase/reductase gene, complete cds; and unknown genes Length = 3677 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 tttcaaatctgccatgttta 345 |||||||||||||||||||| Sbjct: 1750 tttcaaatctgccatgttta 1731
>gb|AC155657.8| Mus musculus 6 BAC RP24-113L15 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 159299 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 aaaggatctgctctgctctg 31 |||||||||||||||||||| Sbjct: 143905 aaaggatctgctctgctctg 143886
>ref|NM_174751.2| Bos taurus ADP-ribosyltransferase (NAD+) poly (ADP-ribose) polymerase) (ADPRT), mRNA Length = 3589 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 atctccttgtctttttcttt 379 |||||||||||||||||||| Sbjct: 780 atctccttgtctttttcttt 761
>gb|AC140366.2| Mus musculus BAC clone RP24-225H21 from chromosome 7, complete sequence Length = 145270 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 242 accatacaaatcattccattgctt 265 ||||||||| |||||||||||||| Sbjct: 32742 accatacaagtcattccattgctt 32765
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 tctcgtagttgtttgccatctatt 163 |||||||||||||||||| ||||| Sbjct: 3714131 tctcgtagttgtttgccaactatt 3714108
>emb|AL929331.15| Zebrafish DNA sequence from clone DKEY-16O9, complete sequence Length = 221062 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 tactttccaaattatgttca 184 |||||||||||||||||||| Sbjct: 64240 tactttccaaattatgttca 64259
>gb|AC140070.3| Mus musculus BAC clone RP24-161L16 from 9, complete sequence Length = 168604 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 ctctgcagattcattattag 46 |||||||||||||||||||| Sbjct: 98501 ctctgcagattcattattag 98520
>gb|AY109177.1| Zea mays PCO089905 mRNA sequence Length = 1098 Score = 40.1 bits (20), Expect = 5.2 Identities = 35/40 (87%) Strand = Plus / Minus Query: 223 tcttcctcgagccgccttcaccatacaaatcattccattg 262 |||||||||| ||||||||||| |||| || |||||||| Sbjct: 421 tcttcctcgacccgccttcaccgtacaggtcgttccattg 382
>gb|AE003609.4| Drosophila melanogaster chromosome 2L, section 18 of 83 of the complete sequence Length = 319287 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 acaagtacaacaaccaaaca 69 |||||||||||||||||||| Sbjct: 29757 acaagtacaacaaccaaaca 29738
>gb|AE003505.3| Drosophila melanogaster chromosome X, section 57 of 74 of the complete sequence Length = 314205 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 tattctactttccaaattat 179 |||||||||||||||||||| Sbjct: 118948 tattctactttccaaattat 118929
>dbj|D90073.1|BOVPAS Bos taurus mRNA for poly(ADP-ribose) synthetase, complete cds Length = 3589 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 atctccttgtctttttcttt 379 |||||||||||||||||||| Sbjct: 780 atctccttgtctttttcttt 761
>gb|AC005750.1|AC005750 Drosophila melanogaster DNA sequence (P1s DS03979 (D283) and DS01272 (D284)), complete sequence Length = 102516 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 acaagtacaacaaccaaaca 69 |||||||||||||||||||| Sbjct: 34516 acaagtacaacaaccaaaca 34535
>emb|AL139194.7|CNS01DXB Human chromosome 14 DNA sequence BAC C-2190G12 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 157120 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 tgtctttttctttcatcttc 386 |||||||||||||||||||| Sbjct: 100560 tgtctttttctttcatcttc 100541
>gb|L77738.1|SYNAEVRV Retroviral vector leader sequence Length = 557 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 tcttcctcgagccgccttca 242 |||||||||||||||||||| Sbjct: 473 tcttcctcgagccgccttca 454 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,983,839 Number of Sequences: 3902068 Number of extensions: 4983839 Number of successful extensions: 158358 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 158089 Number of HSP's gapped (non-prelim): 281 length of query: 391 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 369 effective length of database: 17,147,199,772 effective search space: 6327316715868 effective search space used: 6327316715868 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
