>RDRP_PVXHB (Q07630) RNA replication protein (165 kDa protein) (ORF 1 protein)|
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]
          Length = 1456

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +2

Query: 128 GAYNTEL*HQEGTNISKCHWRHKGFR*QTVHQHQNSRKTDTSSHFANLHYKWTFLAGHLA 307
           GAY+ E  H +   + K  WR        +  H N       +H   +  + +F A HL 
Sbjct: 212 GAYHHEFSHLQSVKVGKIKWRDPK---DGLLGHLNYTHEQVDTHTVTVQLQESFAANHLY 268

Query: 308 LEQRGS 325
             +RG+
Sbjct: 269 CIRRGN 274

>VGLP_BEV (P23052) Peplomer glycoprotein precursor|
          Length = 1581

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -3

Query: 216 TVCYLKPLCLQWHLEMFVPS*CHNSVLYAPDAIFL*VGELCFFTFGTIIIGWQY 55
           T+C+  P         FV   C+N+ LY PDA+F         T  + +  W Y
Sbjct: 334 TLCFGSPF--------FVAQECYNNALYLPDAVFT--------TLFSTLFSWDY 371

>RSE1_KLULA (Q6CXH8) Pre-mRNA-splicing factor RSE1|
          Length = 1269

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 188  SSGI*RCLYLLDVIIQCYMHLTPSFYELVNYV 93
            +S I  C Y L+ +   YM+ TP  +E+VN++
Sbjct: 1086 ASNIKACQYTLETLCHMYMNDTPMKFEIVNHM 1117

>ATG26_ASHGO (Q751Z4) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26)
          Length = 1227

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 170 CLYLLDVIIQCYMHLTPSFYELVNYVFLLLGQSLLVGNTPIC 45
           C  L DV+IQ +++LT        +++   G + L GN  IC
Sbjct: 208 CWLLRDVLIQGHIYLTSRNLLFFAFLYKSNGSARLTGNLSIC 249

>RN5A_MOUSE (Q05921) 2-5A-dependent ribonuclease (EC 3.1.26.-) (2-5A-dependent|
           RNase) (Ribonuclease L) (RNase L) (Ribonuclease 4)
          Length = 735

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 189 GTRVSDSKQYTNTRIPVKQTRAVILPTYTTSGHF*LVTSLLNKEVAEVD 335
           G  V+  +Q T  +  +KQ  A  L +    GH  ++  LLN   AEVD
Sbjct: 148 GANVNLRRQTTKDKRRLKQGGATALMSAAEKGHLEVLRILLNDMKAEVD 196

>RDRP_PVXX3 (P17779) RNA replication protein (165 kDa protein) (ORF 1 protein)|
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]
          Length = 1456

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = +2

Query: 128 GAYNTEL*HQEGTNISKCHWRHKGFR*QTVHQHQNSRKTDTSSHFANLHYKWTFLAGHLA 307
           GAY+ E  H +   + K  WR       +   H N        H   +  + +F A HL 
Sbjct: 212 GAYHHEFAHLQWLKVGKIKWRDPK---DSFLGHLNYTTEQVEMHTVTVQLQESFAANHLY 268

Query: 308 LEQRG 322
             +RG
Sbjct: 269 CIRRG 273

>RDRP_PVX (P09395) RNA replication protein (165 kDa protein) (ORF 1 protein)|
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]
          Length = 1456

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = +2

Query: 128 GAYNTEL*HQEGTNISKCHWRHKGFR*QTVHQHQNSRKTDTSSHFANLHYKWTFLAGHLA 307
           GAY+ E  H +   + K  WR       +   H N        H   +  + +F A HL 
Sbjct: 212 GAYHHEFSHLQWLKVGKIKWRDPK---DSFLGHLNYTTEQVEMHTVTVQLQESFAANHLY 268

Query: 308 LEQRG 322
             +RG
Sbjct: 269 CIRRG 273


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,067,222
Number of Sequences: 219361
Number of extensions: 908660
Number of successful extensions: 2093
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2092
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)