Clone Name | rbastl09c12 |
---|---|
Clone Library Name | barley_pub |
>gb|AY532593.1| Triticum aestivum minichromosomal maintenance factor (MCM2) gene, exons 1 through 18 and complete sequence Length = 8809 Score = 218 bits (110), Expect = 9e-54 Identities = 162/178 (91%), Gaps = 1/178 (0%) Strand = Plus / Minus Query: 118 gatggcgtcaggtgcatataacactgaattatgacatcaagaaggtacaaacatctctaa 177 ||||||||||| | |||| ||||||||||||||| |||||||||||||| ||||||| || Sbjct: 8259 gatggcgtcagttccata-aacactgaattatgatatcaagaaggtacagacatctcgaa 8201 Query: 178 atgccactggaggcacaagggtttcagatagcaaacagtacaccaacaccagaattcccg 237 ||||| ||| |||||||||||||||||||||||||||||||||||| | ||||| || | Sbjct: 8200 atgccgctgtaggcacaagggtttcagatagcaaacagtacaccaatatcagaactctca 8141 Query: 238 taaaacagacacgagcagtcattttgccaacttacactacaagtggacatttctagct 295 ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 8140 caaaacagacacaagcagtcattttgccgacttacactacaagtggacatttctagct 8083 Score = 46.1 bits (23), Expect = 0.074 Identities = 23/23 (100%) Strand = Plus / Minus Query: 305 gctcttgaacaaagaggtagctg 327 ||||||||||||||||||||||| Sbjct: 8085 gctcttgaacaaagaggtagctg 8063
>gb|AC102105.8| Mus musculus chromosome 12, clone RP23-89G24, complete sequence Length = 188853 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 aaagaggtagctgaggttgat 335 ||||||||||||||||||||| Sbjct: 103298 aaagaggtagctgaggttgat 103318
>gb|AC142351.1| Pan troglodytes BAC clone RP43-21J15 from 7, complete sequence Length = 159635 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 aaacatctctaaatgccact 185 |||||||||||||||||||| Sbjct: 104407 aaacatctctaaatgccact 104388
>emb|AL365203.19| Human DNA sequence from clone RP11-479G22 on chromosome 10 Contains the 3' end of a novel gene (FLJ13031) (FLJ40349), the ITGB1 gene for integrin beta 1 (fibronectin receptor beta polypeptide antigen CD29 includes MDF2 MSK12), an adenylate kinase 3 like 1 (AK3L1) pseudogene, a novel gene, the 5' end of a novel gene, a NADH dehydrogenase subunit 4L (ND4L) pseudogene, a pseudogene similar to part of integrin beta 2 (antigen CD18 (p95) lymphocyte function-associated antigen 1; macrophage antigen 1 (mac-1) beta subunit) (ITGB2) and a CpG island, complete sequence Length = 197973 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggaggcacaagggtttcaga 205 |||||||||||||||||||| Sbjct: 92711 ggaggcacaagggtttcaga 92692
>emb|BX323041.9| Zebrafish DNA sequence from clone RP71-82P7 in linkage group 7, complete sequence Length = 146935 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gtaataaggaatttaattaa 20 |||||||||||||||||||| Sbjct: 99763 gtaataaggaatttaattaa 99782
>gb|AC103949.6| Homo sapiens chromosome 18, clone RP11-671P2, complete sequence Length = 177301 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 aaacatctctaaatgccact 185 |||||||||||||||||||| Sbjct: 117250 aaacatctctaaatgccact 117231
>gb|AC118563.1| Homo sapiens chromosome 5 clone CTD-2243F8, complete sequence Length = 105027 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ttaattaaagtcattcatat 32 |||||||||||||||||||| Sbjct: 100831 ttaattaaagtcattcatat 100850
>gb|AC026839.7| Homo sapiens chromosome 5, clone RP11-186B13, complete sequence Length = 156721 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aaacatctctaaatgccact 185 |||||||||||||||||||| Sbjct: 25257 aaacatctctaaatgccact 25276
>gb|AC008705.6| Homo sapiens chromosome 5 clone CTB-77H17, complete sequence Length = 159709 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ttctgtttaaccaacagata 51 |||||||||||||||||||| Sbjct: 22346 ttctgtttaaccaacagata 22365
>gb|AC011369.4| Homo sapiens chromosome 5 clone CTB-105N12, complete sequence Length = 141529 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ttctgtttaaccaacagata 51 |||||||||||||||||||| Sbjct: 120401 ttctgtttaaccaacagata 120420
>gb|AC108022.3| Homo sapiens BAC clone RP11-9D8 from 4, complete sequence Length = 162609 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tcaggtgcatataacactga 144 |||||||||||||||||||| Sbjct: 18559 tcaggtgcatataacactga 18578
>gb|AC010346.6|AC010346 Homo sapiens chromosome 5 clone CITB-H1_2018B2, complete sequence Length = 109626 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ttaattaaagtcattcatat 32 |||||||||||||||||||| Sbjct: 56734 ttaattaaagtcattcatat 56753
>gb|AC090059.9| Homo sapiens 12 BAC RP11-604C20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 130125 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ataatgattgtcccaaaagt 87 |||||||||||||||||||| Sbjct: 45587 ataatgattgtcccaaaagt 45606
>dbj|AB056778.1| Macaca fascicularis brain cDNA clone:QccE-21094, full insert sequence Length = 1550 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 gaacaaagaggtagctgagg 330 |||||||||||||||||||| Sbjct: 727 gaacaaagaggtagctgagg 746 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,973,573 Number of Sequences: 3902068 Number of extensions: 2973573 Number of successful extensions: 58173 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58150 Number of HSP's gapped (non-prelim): 23 length of query: 344 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 322 effective length of database: 17,147,199,772 effective search space: 5521398326584 effective search space used: 5521398326584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)