Clone Name | rbastl09c09 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3549 Score = 44.1 bits (22), Expect = 0.068 Identities = 22/22 (100%) Strand = Plus / Minus Query: 71 ctggagcttgctcttcctcgtc 92 |||||||||||||||||||||| Sbjct: 3153 ctggagcttgctcttcctcgtc 3132
>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120 gene, complete cds Length = 5478 Score = 44.1 bits (22), Expect = 0.068 Identities = 22/22 (100%) Strand = Plus / Minus Query: 71 ctggagcttgctcttcctcgtc 92 |||||||||||||||||||||| Sbjct: 5271 ctggagcttgctcttcctcgtc 5250
>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120 mRNA, complete cds Length = 2961 Score = 44.1 bits (22), Expect = 0.068 Identities = 22/22 (100%) Strand = Plus / Minus Query: 71 ctggagcttgctcttcctcgtc 92 |||||||||||||||||||||| Sbjct: 2932 ctggagcttgctcttcctcgtc 2911
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.068 Identities = 22/22 (100%) Strand = Plus / Plus Query: 71 ctggagcttgctcttcctcgtc 92 |||||||||||||||||||||| Sbjct: 19118661 ctggagcttgctcttcctcgtc 19118682
>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0415B12 Length = 157419 Score = 44.1 bits (22), Expect = 0.068 Identities = 22/22 (100%) Strand = Plus / Plus Query: 71 ctggagcttgctcttcctcgtc 92 |||||||||||||||||||||| Sbjct: 16910 ctggagcttgctcttcctcgtc 16931
>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17 Length = 149142 Score = 44.1 bits (22), Expect = 0.068 Identities = 22/22 (100%) Strand = Plus / Plus Query: 71 ctggagcttgctcttcctcgtc 92 |||||||||||||||||||||| Sbjct: 124182 ctggagcttgctcttcctcgtc 124203
>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full insert sequence Length = 3547 Score = 44.1 bits (22), Expect = 0.068 Identities = 22/22 (100%) Strand = Plus / Minus Query: 71 ctggagcttgctcttcctcgtc 92 |||||||||||||||||||||| Sbjct: 3151 ctggagcttgctcttcctcgtc 3130
>dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D08, full insert sequence Length = 1551 Score = 44.1 bits (22), Expect = 0.068 Identities = 22/22 (100%) Strand = Plus / Minus Query: 71 ctggagcttgctcttcctcgtc 92 |||||||||||||||||||||| Sbjct: 1169 ctggagcttgctcttcctcgtc 1148
>ref|XM_507081.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1076_H08.5 mRNA Length = 447 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 48 acgcggcggggatctcctcccgc 70 |||||||||||| |||||||||| Sbjct: 388 acgcggcggggagctcctcccgc 366
>ref|XM_507080.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1076_H08.5 mRNA Length = 903 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 48 acgcggcggggatctcctcccgc 70 |||||||||||| |||||||||| Sbjct: 388 acgcggcggggagctcctcccgc 366
>gb|AC147377.4| Mus musculus BAC clone RP23-156K23 from chromosome 5, complete sequence Length = 236084 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 58 gatctcctcccgcctggagcttg 80 |||||||||| |||||||||||| Sbjct: 228163 gatctcctcctgcctggagcttg 228141
>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08, complete sequence Length = 148348 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 48 acgcggcggggatctcctcccgc 70 |||||||||||| |||||||||| Sbjct: 32054 acgcggcggggagctcctcccgc 32032
>emb|AL353572.13| Human DNA sequence from clone RP11-350E12 on chromosome 9 Contains the gene for cell cycle related kinase (CCRK,CDCH), two novel pseudogenes, a 40S ribosomal protein S10 pseudogene (RPS10P3), a pseudogene similar to part of a novel protein and two CpG islands, complete sequence Length = 207295 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 61 ctcctcccgcctggagctt 79 ||||||||||||||||||| Sbjct: 174789 ctcctcccgcctggagctt 174807
>gb|AC099804.3| Homo sapiens chromosome 17, clone CTD-2357A8, complete sequence Length = 119922 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 gcctggagcttgctcttcc 87 ||||||||||||||||||| Sbjct: 119359 gcctggagcttgctcttcc 119341
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 48 acgcggcggggatctcctcccgc 70 |||||||||||| |||||||||| Sbjct: 7077205 acgcggcggggagctcctcccgc 7077183
>gb|AC022966.13| Homo sapiens chromosome 17, clone RP11-323N12, complete sequence Length = 184139 Score = 38.2 bits (19), Expect = 4.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 gcctggagcttgctcttcc 87 ||||||||||||||||||| Sbjct: 33558 gcctggagcttgctcttcc 33540
>dbj|AK099688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073A18, full insert sequence Length = 2647 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 48 acgcggcggggatctcctcccgc 70 |||||||||||| |||||||||| Sbjct: 453 acgcggcggggagctcctcccgc 431
>dbj|AK066642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073I22, full insert sequence Length = 1331 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 48 acgcggcggggatctcctcccgc 70 |||||||||||| |||||||||| Sbjct: 503 acgcggcggggagctcctcccgc 481
>gb|AC151475.1| Mus musculus BAC clone RP23-283P1 from 5, complete sequence Length = 171663 Score = 38.2 bits (19), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 58 gatctcctcccgcctggagcttg 80 |||||||||| |||||||||||| Sbjct: 22900 gatctcctcctgcctggagcttg 22878 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 772,099 Number of Sequences: 3902068 Number of extensions: 772099 Number of successful extensions: 47561 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47499 Number of HSP's gapped (non-prelim): 62 length of query: 96 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 75 effective length of database: 17,151,101,840 effective search space: 1286332638000 effective search space used: 1286332638000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)