ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.068
2gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA bindin... 44 0.068
3gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA bindin... 44 0.068
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.068
5dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.068
6dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.068
7dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.068
8dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.068
9ref|XM_507081.1| PREDICTED Oryza sativa (japonica cultivar-group... 38 4.2
10ref|XM_507080.1| PREDICTED Oryza sativa (japonica cultivar-group... 38 4.2
11gb|AC147377.4| Mus musculus BAC clone RP23-156K23 from chromosom... 38 4.2
12gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome... 38 4.2
13emb|AL353572.13| Human DNA sequence from clone RP11-350E12 on ch... 38 4.2
14gb|AC099804.3| Homo sapiens chromosome 17, clone CTD-2357A8, com... 38 4.2
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.2
16gb|AC022966.13| Homo sapiens chromosome 17, clone RP11-323N12, c... 38 4.2
17dbj|AK099688.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 4.2
18dbj|AK066642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 4.2
19gb|AC151475.1| Mus musculus BAC clone RP23-283P1 from 5, complet... 38 4.2

>ref|XM_466019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3549

 Score = 44.1 bits (22), Expect = 0.068
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 71   ctggagcttgctcttcctcgtc 92
            ||||||||||||||||||||||
Sbjct: 3153 ctggagcttgctcttcctcgtc 3132



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>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
            gene, complete cds
          Length = 5478

 Score = 44.1 bits (22), Expect = 0.068
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 71   ctggagcttgctcttcctcgtc 92
            ||||||||||||||||||||||
Sbjct: 5271 ctggagcttgctcttcctcgtc 5250



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>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
            mRNA, complete cds
          Length = 2961

 Score = 44.1 bits (22), Expect = 0.068
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 71   ctggagcttgctcttcctcgtc 92
            ||||||||||||||||||||||
Sbjct: 2932 ctggagcttgctcttcctcgtc 2911



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.068
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 71       ctggagcttgctcttcctcgtc 92
                ||||||||||||||||||||||
Sbjct: 19118661 ctggagcttgctcttcctcgtc 19118682



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>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0415B12
          Length = 157419

 Score = 44.1 bits (22), Expect = 0.068
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 71    ctggagcttgctcttcctcgtc 92
             ||||||||||||||||||||||
Sbjct: 16910 ctggagcttgctcttcctcgtc 16931



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>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score = 44.1 bits (22), Expect = 0.068
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 71     ctggagcttgctcttcctcgtc 92
              ||||||||||||||||||||||
Sbjct: 124182 ctggagcttgctcttcctcgtc 124203



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>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full
            insert sequence
          Length = 3547

 Score = 44.1 bits (22), Expect = 0.068
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 71   ctggagcttgctcttcctcgtc 92
            ||||||||||||||||||||||
Sbjct: 3151 ctggagcttgctcttcctcgtc 3130



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>dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D08, full
            insert sequence
          Length = 1551

 Score = 44.1 bits (22), Expect = 0.068
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 71   ctggagcttgctcttcctcgtc 92
            ||||||||||||||||||||||
Sbjct: 1169 ctggagcttgctcttcctcgtc 1148



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>ref|XM_507081.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1076_H08.5 mRNA
          Length = 447

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 48  acgcggcggggatctcctcccgc 70
           |||||||||||| ||||||||||
Sbjct: 388 acgcggcggggagctcctcccgc 366



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>ref|XM_507080.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1076_H08.5 mRNA
          Length = 903

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 48  acgcggcggggatctcctcccgc 70
           |||||||||||| ||||||||||
Sbjct: 388 acgcggcggggagctcctcccgc 366



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>gb|AC147377.4| Mus musculus BAC clone RP23-156K23 from chromosome 5, complete sequence
          Length = 236084

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 58     gatctcctcccgcctggagcttg 80
              |||||||||| ||||||||||||
Sbjct: 228163 gatctcctcctgcctggagcttg 228141



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>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08,
             complete sequence
          Length = 148348

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 48    acgcggcggggatctcctcccgc 70
             |||||||||||| ||||||||||
Sbjct: 32054 acgcggcggggagctcctcccgc 32032



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>emb|AL353572.13| Human DNA sequence from clone RP11-350E12 on chromosome 9 Contains the
              gene for cell cycle related kinase (CCRK,CDCH), two novel
              pseudogenes, a 40S ribosomal protein S10 pseudogene
              (RPS10P3), a pseudogene similar to part of a novel protein
              and two CpG islands, complete sequence
          Length = 207295

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 61     ctcctcccgcctggagctt 79
              |||||||||||||||||||
Sbjct: 174789 ctcctcccgcctggagctt 174807



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>gb|AC099804.3| Homo sapiens chromosome 17, clone CTD-2357A8, complete sequence
          Length = 119922

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 69     gcctggagcttgctcttcc 87
              |||||||||||||||||||
Sbjct: 119359 gcctggagcttgctcttcc 119341



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 48      acgcggcggggatctcctcccgc 70
               |||||||||||| ||||||||||
Sbjct: 7077205 acgcggcggggagctcctcccgc 7077183



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>gb|AC022966.13| Homo sapiens chromosome 17, clone RP11-323N12, complete sequence
          Length = 184139

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 69    gcctggagcttgctcttcc 87
             |||||||||||||||||||
Sbjct: 33558 gcctggagcttgctcttcc 33540



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>dbj|AK099688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073A18, full
           insert sequence
          Length = 2647

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 48  acgcggcggggatctcctcccgc 70
           |||||||||||| ||||||||||
Sbjct: 453 acgcggcggggagctcctcccgc 431



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>dbj|AK066642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073I22, full
           insert sequence
          Length = 1331

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 48  acgcggcggggatctcctcccgc 70
           |||||||||||| ||||||||||
Sbjct: 503 acgcggcggggagctcctcccgc 481



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>gb|AC151475.1| Mus musculus BAC clone RP23-283P1 from 5, complete sequence
          Length = 171663

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 58    gatctcctcccgcctggagcttg 80
             |||||||||| ||||||||||||
Sbjct: 22900 gatctcctcctgcctggagcttg 22878


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 772,099
Number of Sequences: 3902068
Number of extensions: 772099
Number of successful extensions: 47561
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47499
Number of HSP's gapped (non-prelim): 62
length of query: 96
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 75
effective length of database: 17,151,101,840
effective search space: 1286332638000
effective search space used: 1286332638000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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