Clone Name | rbastl09c08 |
---|---|
Clone Library Name | barley_pub |
>PURA_DROME (Q9Y0Y2) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 447 Score = 32.7 bits (73), Expect = 0.23 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -1 Query: 260 IEDRVEPCIVIHKHVQGIQEAEKGKQEIKKRCKGL 156 I DR H+HV G+QEAEKG + + KG+ Sbjct: 123 ISDRAHLVFDFHQHVDGMQEAEKGGKSLGTTKKGI 157
>SUVH7_ARATH (Q9C5P1) Histone-lysine N-methyltransferase, H3 lysine-9 specific| SUVH7 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 7) (H3-K9-HMTase 7) (Suppressor of variegation 3-9 homolog protein 7) (Su(var)3-9 homolog protein 7) (Protein SET DOMAIN GR Length = 693 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 4/23 (17%) Frame = +1 Query: 16 GCSNC----ILHRNCNCVTRNYD 72 GC NC +H+NC CV RN D Sbjct: 457 GCQNCRHQPCMHQNCTCVQRNGD 479
>CG146_HUMAN (Q9BSY9) UPF0326 protein CGI-146| Length = 194 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/50 (36%), Positives = 27/50 (54%) Frame = +1 Query: 172 FLISCLPFSASCIPCTCLWMTMHGSTRSSISHSQKCLLVQQNDFATSLSV 321 + SC+PF SC+P W+T + +SS+S + L + D A S SV Sbjct: 133 YFSSCIPFLQSCLPKE--WLT-PAALQSSVSQELQDELEEAEDAAASASV 179
>AKL1_YEAST (P38080) Serine/threonine-protein kinase AKL1 (EC 2.7.11.1)| Length = 1108 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 3/35 (8%) Frame = +3 Query: 246 NSVLNLSFSEMPLS---TAK*LCNFSLSSSSPTVQ 341 N VLNLS +EM LS T + +FS SSSS ++Q Sbjct: 840 NGVLNLSLNEMDLSRDDTGAAVSSFSSSSSSASIQ 874
>EF2_SULAC (P23112) Elongation factor 2 (EF-2)| Length = 736 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/37 (37%), Positives = 24/37 (64%) Frame = -1 Query: 260 IEDRVEPCIVIHKHVQGIQEAEKGKQEIKKRCKGLVV 150 +E+RV P + I+K + I+E + QEI+KR L++ Sbjct: 135 LEERVRPILFINKVDRLIKELKLSSQEIQKRLIDLII 171
>SIAH2_XENLA (Q9I8X5) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Xsiah-2) Length = 313 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/62 (22%), Positives = 24/62 (38%) Frame = +1 Query: 151 TTKPLQRFLISCLPFSASCIPCTCLWMTMHGSTRSSISHSQKCLLVQQNDFATSLSVHLR 330 T KP + P+S C +C W + ++HS K + Q + L+ + Sbjct: 141 TEKPEHEDICEYRPYSCPCPGASCKWQGSLENVMQHLTHSHKSITTLQGEDIVFLATDIN 200 Query: 331 PP 336 P Sbjct: 201 LP 202
>SIAH2_RAT (Q8R4T2) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) Length = 325 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/66 (22%), Positives = 25/66 (37%) Frame = +1 Query: 139 TERKTTKPLQRFLISCLPFSASCIPCTCLWMTMHGSTRSSISHSQKCLLVQQNDFATSLS 318 T T KP + P+S C +C W + S + H+ K + Q + L+ Sbjct: 149 TLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLA 208 Query: 319 VHLRPP 336 + P Sbjct: 209 TDINLP 214
>SIAH2_MOUSE (Q06986) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) (mSiah2) Length = 325 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/66 (22%), Positives = 25/66 (37%) Frame = +1 Query: 139 TERKTTKPLQRFLISCLPFSASCIPCTCLWMTMHGSTRSSISHSQKCLLVQQNDFATSLS 318 T T KP + P+S C +C W + S + H+ K + Q + L+ Sbjct: 149 TLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLA 208 Query: 319 VHLRPP 336 + P Sbjct: 209 TDINLP 214
>SIAH2_HUMAN (O43255) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) (hSiah2) Length = 324 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/66 (22%), Positives = 25/66 (37%) Frame = +1 Query: 139 TERKTTKPLQRFLISCLPFSASCIPCTCLWMTMHGSTRSSISHSQKCLLVQQNDFATSLS 318 T T KP + P+S C +C W + S + H+ K + Q + L+ Sbjct: 148 TLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLA 207 Query: 319 VHLRPP 336 + P Sbjct: 208 TDINLP 213
>CG146_PONPY (Q5R456) UPF0326 protein CGI-146 homolog| Length = 194 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +1 Query: 172 FLISCLPFSASCIPCTCLWMTMHGSTRSSISHSQKCLLVQQNDFATSLS 318 + SC+PF SC+P W+T + +SS+S + L + D A S S Sbjct: 133 YFSSCIPFLQSCLPKE--WLT-PAALQSSVSQELQDELEEAEDAAASAS 178
>UBP22_MOUSE (Q5DU02) Ubiquitin carboxyl-terminal hydrolase 22 (EC 3.1.2.15)| (Ubiquitin thioesterase 22) (Ubiquitin-specific-processing protease 22) (Deubiquitinating enzyme 22) Length = 525 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = -2 Query: 163 RA*LSCVLWIFTTRAVEGVPQFCCSTTVSIYRSFL*HSCSFCARYNCY 20 RA C +W T A + + C I+ + L HSC +C + C+ Sbjct: 39 RAIYQCFVWSGTAEARKRKAKSCVCHVCGIHLNRL-HSCLYCVFFGCF 85
>UBP22_HUMAN (Q9UPT9) Ubiquitin carboxyl-terminal hydrolase 22 (EC 3.1.2.15)| (Ubiquitin thioesterase 22) (Ubiquitin-specific-processing protease 22) (Deubiquitinating enzyme 22) Length = 525 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/48 (27%), Positives = 22/48 (45%) Frame = -2 Query: 163 RA*LSCVLWIFTTRAVEGVPQFCCSTTVSIYRSFL*HSCSFCARYNCY 20 RA C +W T A + + C ++ + L HSC +C + C+ Sbjct: 39 RAIYQCFVWSGTAEARKRKAKSCICHVCGVHLNRL-HSCLYCVFFGCF 85
>PURA_SCHPO (Q02787) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 434 Score = 27.3 bits (59), Expect = 9.6 Identities = 18/54 (33%), Positives = 22/54 (40%) Frame = -1 Query: 317 EREVAKSFCCTKRHF*E*EIEDRVEPCIVIHKHVQGIQEAEKGKQEIKKRCKGL 156 E+ K C R F I DR H+ + EAE GKQ I KG+ Sbjct: 97 EKLEQKGLKCRDRIF----ISDRAHLVFDYHQRADALNEAELGKQSIGTTGKGI 146
>SYV_BUCBP (Q89AG3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 956 Score = 27.3 bits (59), Expect = 9.6 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +3 Query: 24 QLYLAQKLQLCHKKL 68 Q+Y+ K QLCHKKL Sbjct: 937 QIYIEHKTQLCHKKL 951
>AMOL2_HUMAN (Q9Y2J4) Angiomotin-like protein 2 (Leman coiled-coil protein)| (LCCP) Length = 779 Score = 27.3 bits (59), Expect = 9.6 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -2 Query: 328 EDELREKLQSHFAVLRGISENERLRTEL 245 + + +EKL+ A+LRG E++R R EL Sbjct: 430 QQQEQEKLEREMALLRGAIEDQRRRAEL 457
>UROK_HUMAN (P00749) Urokinase-type plasminogen activator precursor (EC| 3.4.21.73) (uPA) (U-plasminogen activator) [Contains: Urokinase-type plasminogen activator long chain A; Urokinase-type plasminogen activator short chain A; Urokinase-type plasminogen Length = 431 Score = 27.3 bits (59), Expect = 9.6 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = +1 Query: 10 HQGCSNCILHRNCNCVTRNYDKSIQWC 90 HQ SNC CV+ Y +I WC Sbjct: 25 HQVPSNCDCLNGGTCVSNKYFSNIHWC 51
>SACB_STRMU (P11701) Levansucrase precursor (EC 2.4.1.10)| (Beta-D-fructofuranosyl transferase) (Sucrose 6-fructosyl transferase) Length = 795 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +2 Query: 5 KIIKDVAIVSCTETATVSQETTINRYSGATTELGDT 112 K+I D A V + T Q T+ + S +T E+G T Sbjct: 94 KVITDNAAVESKASKTKDQAATVTKTSASTPEVGQT 129
>CG146_MOUSE (Q9D291) UPF0326 protein CGI-146 homolog| Length = 194 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +1 Query: 172 FLISCLPFSASCIPCTCLWMTMHGSTRSSISHSQKCLLVQQNDFATS 312 + SC+PF SC+P W+T + +SS+S + L + D A S Sbjct: 133 YFSSCIPFLQSCLPKE--WLT-PAALQSSVSQELQDELEEAEDAAAS 176 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,358,286 Number of Sequences: 219361 Number of extensions: 804169 Number of successful extensions: 2404 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2357 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2403 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)