ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
2dbj|AP003620.3| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
3dbj|AK121899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 1e-21
4dbj|AK099764.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 1e-21
5dbj|AK103794.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 1e-21
6ref|XM_382687.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 46 0.074
7emb|AL731856.14| Human DNA sequence from clone RP11-647P3 on chr... 44 0.29
8emb|BX950864.17| Zebrafish DNA sequence from clone DKEY-158B13 i... 44 0.29
9gb|DQ017661.1| Salmonella enterica plasmid pNF1358, complete seq... 42 1.2
10ref|NM_001021695.1| Schizosaccharomyces pombe 972h- hypothetical... 42 1.2
11dbj|AB021078.1| plasmid ColIb-P9 DNA, complete sequence 42 1.2
12gb|AF142414.1|AF142414 Amoeba proteus pepstatin-insensitive carb... 42 1.2
13emb|Z99759.1|SPBC16E9 S.pombe chromosome II cosmid c16E9 42 1.2
14gb|AC092112.17| Homo sapiens 12 BAC RP11-134N1 (Roswell Park Can... 42 1.2
15ref|NM_128240.1| Arabidopsis thaliana EMB1187; kinase/ phosphotr... 40 4.6
16ref|NM_196108.1| Oryza sativa (japonica cultivar-group) putative... 40 4.6
17gb|AC005740.1| Homo sapiens chromosome 5p, BAC clone 50g21 (LBNL... 40 4.6
18gb|AC145586.4| Mus musculus BAC clone RP24-167J1 from chromosome... 40 4.6
19gb|AC129209.4| Mus musculus BAC clone RP24-318B5 from chromosome... 40 4.6
20gb|AC145742.3| Mus musculus BAC clone RP24-225F21 from chromosom... 40 4.6
21gb|AC160564.2| Pan troglodytes BAC clone CH251-542C24 from chrom... 40 4.6
22gb|AC175494.3| Mus musculus BAC clone RP24-75G20 from chromosome... 40 4.6
23gb|AC147126.2| Mus musculus BAC clone RP24-561J22 from chromosom... 40 4.6
24gb|AC130834.4| Mus musculus BAC clone RP24-119M1 from chromosome... 40 4.6
25gb|AC144855.3| Mus musculus BAC clone RP24-179H2 from chromosome... 40 4.6
26gb|AC140394.3| Mus musculus BAC clone RP24-181E19 from chromosom... 40 4.6
27gb|AC147159.2| Mus musculus BAC clone RP24-259B7 from chromosome... 40 4.6
28gb|AC125086.4| Mus musculus BAC clone RP24-137C4 from chromosome... 40 4.6
29gb|AC125229.3| Mus musculus BAC clone RP23-45P1 from 5, complete... 40 4.6
30emb|BX005211.21| Zebrafish DNA sequence from clone CH211-128A7 i... 40 4.6
31emb|AL365254.14| Human DNA sequence from clone RP11-420H21 on ch... 40 4.6
32gb|AC175667.3| Mus musculus BAC clone RP24-372I14 from chromosom... 40 4.6
33gb|AY327045.1| Oryza sativa (japonica cultivar-group) disease-re... 40 4.6
34ref|XM_781130.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.6
35gb|AC010107.7| Drosophila melanogaster 3L BAC RP98-2B1 (Roswell ... 40 4.6
36gb|AC182448.2| Mus musculus BAC clone RP24-490J20 from chromosom... 40 4.6
37gb|AC179922.3| Mus musculus BAC clone RP24-571K5 from chromosome... 40 4.6
38gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 ma... 40 4.6
39gb|AC113335.1| Genomic sequence for Oryza sativa (japonica culti... 40 4.6
40gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar N... 40 4.6
41gb|AC010202.6| Homo sapiens 12q BAC RP11-210L7 (Roswell Park Can... 40 4.6
42gb|AC182761.2| Mus musculus BAC clone RP24-91P5 from chromosome ... 40 4.6
43gb|AC091220.3| Drosophila melanogaster 3L BAC RP98-7E7 (Roswell ... 40 4.6
44gb|AC091970.3| Homo sapiens chromosome 5 clone RP11-509B9, compl... 40 4.6
45gb|AC175818.2| Mus musculus BAC clone RP24-566J3 from chromosome... 40 4.6
46emb|BX323835.9| Zebrafish DNA sequence from clone DKEYP-22F6 in ... 40 4.6
47gb|AC099694.12| Mus musculus, clone RP23-195D9, complete sequence 40 4.6
48gb|AC175461.3| Mus musculus BAC clone RP24-64J17 from chromosome... 40 4.6
49dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
50emb|BX819677.1|CNS0AA0I Arabidopsis thaliana Full-length cDNA Co... 40 4.6
51emb|BX819992.1|CNS0A8EY Arabidopsis thaliana Full-length cDNA Co... 40 4.6
52gb|AC145572.4| Mus musculus BAC clone RP24-95P13 from chromosome... 40 4.6
53gb|AC021849.5| Homo sapiens BAC clone RP11-366G5 from 2, complet... 40 4.6
54gb|AC021058.16|AC021058 Homo sapiens 12 BAC RP11-373H1 (Roswell ... 40 4.6
55gb|AC078847.2|AC078847 Homo sapiens chromosome 7 clone RP11-3M15... 40 4.6
56gb|AY087681.1| Arabidopsis thaliana clone 37620 mRNA, complete s... 40 4.6
57gb|AC175033.2| Mus musculus BAC clone RP24-283I7 from chromosome... 40 4.6
58emb|BX004764.8| Zebrafish DNA sequence from clone DKEY-162L4 in ... 40 4.6
59dbj|BS000085.1| Pan troglodytes chromosome 22 clone:RP43-164H01,... 40 4.6
60dbj|AK100740.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
61gb|AC134599.4| Mus musculus BAC clone RP23-192O14 from 12, compl... 40 4.6
62gb|AE003551.3| Drosophila melanogaster chromosome 3L, section 34... 40 4.6
63dbj|AP001686.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 4.6
64gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6
65gb|AC145575.3| Mus musculus BAC clone RP24-103M14 from Y, comple... 40 4.6
66gb|AC140421.4| Mus musculus BAC clone RP24-441H14 from Y, comple... 40 4.6
67gb|AC148013.3| Mus musculus BAC clone RP23-134C2 from 18, comple... 40 4.6
68emb|CR956639.4| Pig DNA sequence from clone CH242-279P20 on chro... 40 4.6
69emb|BX649554.17| Zebrafish DNA sequence from clone DKEYP-71F10 i... 40 4.6
70emb|AL844562.3| Mouse DNA sequence from clone RP23-230F7 on chro... 40 4.6
71dbj|AP000949.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 4.6
72dbj|AP001116.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 4.6 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  111 bits (56), Expect = 1e-21
 Identities = 113/132 (85%)
 Strand = Plus / Minus

                                                                            
Query: 195      ttctgcttcttgtattccttgtacatgcttatggatgacaatgcatggttcaactcggtc 254
                ||||||||||||||||||||||||| | | ||||||||||| |  ||||||| ||| |  
Sbjct: 17293338 ttctgcttcttgtattccttgtacaagttgatggatgacaacgtgtggttcagctcagct 17293279

                                                                            
Query: 255      ctcaatctctcattctcagaaatgcctcttagtacagcaaaatgactttgcaacttctct 314
                ||||||||||||||||| || || ||||||||||| ||||||||| |||  |||||||||
Sbjct: 17293278 ctcaatctctcattctctgagatacctcttagtaccgcaaaatgattttttaacttctct 17293219

                            
Query: 315      ctcagttcatct 326
                 | |||||||||
Sbjct: 17293218 ttgagttcatct 17293207
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>dbj|AP003620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0596H06
          Length = 142832

 Score =  111 bits (56), Expect = 1e-21
 Identities = 113/132 (85%)
 Strand = Plus / Minus

                                                                         
Query: 195   ttctgcttcttgtattccttgtacatgcttatggatgacaatgcatggttcaactcggtc 254
             ||||||||||||||||||||||||| | | ||||||||||| |  ||||||| ||| |  
Sbjct: 29931 ttctgcttcttgtattccttgtacaagttgatggatgacaacgtgtggttcagctcagct 29872

                                                                         
Query: 255   ctcaatctctcattctcagaaatgcctcttagtacagcaaaatgactttgcaacttctct 314
             ||||||||||||||||| || || ||||||||||| ||||||||| |||  |||||||||
Sbjct: 29871 ctcaatctctcattctctgagatacctcttagtaccgcaaaatgattttttaacttctct 29812

                         
Query: 315   ctcagttcatct 326
              | |||||||||
Sbjct: 29811 ttgagttcatct 29800
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>dbj|AK121899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105F16, full
            insert sequence
          Length = 2880

 Score =  111 bits (56), Expect = 1e-21
 Identities = 113/132 (85%)
 Strand = Plus / Minus

                                                                        
Query: 195  ttctgcttcttgtattccttgtacatgcttatggatgacaatgcatggttcaactcggtc 254
            ||||||||||||||||||||||||| | | ||||||||||| |  ||||||| ||| |  
Sbjct: 2584 ttctgcttcttgtattccttgtacaagttgatggatgacaacgtgtggttcagctcagct 2525

                                                                        
Query: 255  ctcaatctctcattctcagaaatgcctcttagtacagcaaaatgactttgcaacttctct 314
            ||||||||||||||||| || || ||||||||||| ||||||||| |||  |||||||||
Sbjct: 2524 ctcaatctctcattctctgagatacctcttagtaccgcaaaatgattttttaacttctct 2465

                        
Query: 315  ctcagttcatct 326
             | |||||||||
Sbjct: 2464 ttgagttcatct 2453
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>dbj|AK099764.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094N16, full
            insert sequence
          Length = 2836

 Score =  111 bits (56), Expect = 1e-21
 Identities = 113/132 (85%)
 Strand = Plus / Minus

                                                                        
Query: 195  ttctgcttcttgtattccttgtacatgcttatggatgacaatgcatggttcaactcggtc 254
            ||||||||||||||||||||||||| | | ||||||||||| |  ||||||| ||| |  
Sbjct: 2645 ttctgcttcttgtattccttgtacaagttgatggatgacaacgtgtggttcagctcagct 2586

                                                                        
Query: 255  ctcaatctctcattctcagaaatgcctcttagtacagcaaaatgactttgcaacttctct 314
            ||||||||||||||||| || || ||||||||||| ||||||||| |||  |||||||||
Sbjct: 2585 ctcaatctctcattctctgagatacctcttagtaccgcaaaatgattttttaacttctct 2526

                        
Query: 315  ctcagttcatct 326
             | |||||||||
Sbjct: 2525 ttgagttcatct 2514
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>dbj|AK103794.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145O08, full
            insert sequence
          Length = 3063

 Score =  111 bits (56), Expect = 1e-21
 Identities = 113/132 (85%)
 Strand = Plus / Minus

                                                                        
Query: 195  ttctgcttcttgtattccttgtacatgcttatggatgacaatgcatggttcaactcggtc 254
            ||||||||||||||||||||||||| | | ||||||||||| |  ||||||| ||| |  
Sbjct: 2584 ttctgcttcttgtattccttgtacaagttgatggatgacaacgtgtggttcagctcagct 2525

                                                                        
Query: 255  ctcaatctctcattctcagaaatgcctcttagtacagcaaaatgactttgcaacttctct 314
            ||||||||||||||||| || || ||||||||||| ||||||||| |||  |||||||||
Sbjct: 2524 ctcaatctctcattctctgagatacctcttagtaccgcaaaatgattttttaacttctct 2465

                        
Query: 315  ctcagttcatct 326
             | |||||||||
Sbjct: 2464 ttgagttcatct 2453
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>ref|XM_382687.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02511.1)
           partial mRNA
          Length = 2304

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 179 tttcttgcttgcctttttctgcttcttgtattcct 213
           |||||||||| |||| ||||||||||||| |||||
Sbjct: 732 tttcttgcttcccttcttctgcttcttgtcttcct 698
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>emb|AL731856.14| Human DNA sequence from clone RP11-647P3 on chromosome 9, complete
             sequence
          Length = 51132

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 186   cttgcctttttctgcttcttgtattccttg 215
             |||||||| ||| |||||||||||||||||
Sbjct: 47843 cttgccttcttcagcttcttgtattccttg 47814
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>emb|BX950864.17| Zebrafish DNA sequence from clone DKEY-158B13 in linkage group 19,
              complete sequence
          Length = 185429

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 294    aaatgactttgcaacttctctc 315
              ||||||||||||||||||||||
Sbjct: 140281 aaatgactttgcaacttctctc 140260
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>gb|DQ017661.1| Salmonella enterica plasmid pNF1358, complete sequence
          Length = 99331

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 175   ttgatttcttgcttgcctttttctgcttc 203
             |||||||||||||| ||||||||| ||||
Sbjct: 94579 ttgatttcttgcttccctttttcttcttc 94607
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>ref|NM_001021695.1| Schizosaccharomyces pombe 972h- hypothetical protein
           (SPBC16E9.12c), partial mRNA
          Length = 501

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 290 agcaaaatgactttgcaacttctct 314
           |||||||||||||||||||| ||||
Sbjct: 228 agcaaaatgactttgcaactcctct 204
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>dbj|AB021078.1| plasmid ColIb-P9 DNA, complete sequence
          Length = 93399

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 175   ttgatttcttgcttgcctttttctgcttc 203
             |||||||||||||| ||||||||| ||||
Sbjct: 88647 ttgatttcttgcttccctttttcttcttc 88675
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>gb|AF142414.1|AF142414 Amoeba proteus pepstatin-insensitive carboxyl proteinase 1 (PICP)
           mRNA, partial cds
          Length = 1274

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 298 gactttgcaacttctctctcagttc 322
           ||||||||||||||| |||||||||
Sbjct: 85  gactttgcaacttctttctcagttc 109
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>emb|Z99759.1|SPBC16E9 S.pombe chromosome II cosmid c16E9
          Length = 40065

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 290   agcaaaatgactttgcaacttctct 314
             |||||||||||||||||||| ||||
Sbjct: 24225 agcaaaatgactttgcaactcctct 24249
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>gb|AC092112.17| Homo sapiens 12 BAC RP11-134N1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 86057

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    tacagtggtgctacaacagaa 100
             |||||||||||||||||||||
Sbjct: 40861 tacagtggtgctacaacagaa 40841
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>ref|NM_128240.1| Arabidopsis thaliana EMB1187; kinase/ phosphotransferase, alcohol
            group as acceptor AT2G26830 (EMB1187) mRNA, complete cds
          Length = 1311

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 195  ttctgcttcttgtattccttgtac 218
            ||||||||||||||||| ||||||
Sbjct: 1114 ttctgcttcttgtattcattgtac 1091
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>ref|NM_196108.1| Oryza sativa (japonica cultivar-group) putative disease resistance
           protein (OJ1003C07.3), mRNA
          Length = 2694

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tacaacagaattgggggaca 110
           ||||||||||||||||||||
Sbjct: 667 tacaacagaattgggggaca 686
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>gb|AC005740.1| Homo sapiens chromosome 5p, BAC clone 50g21 (LBNL H154), complete
             sequence
          Length = 186780

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   ttctgcttcttgtattcctt 214
             ||||||||||||||||||||
Sbjct: 98431 ttctgcttcttgtattcctt 98450
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>gb|AC145586.4| Mus musculus BAC clone RP24-167J1 from chromosome Y, complete sequence
          Length = 158469

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 177    gatttcttgcttgcctttttctgcttct 204
              ||||||||  ||||||||||||||||||
Sbjct: 107901 gatttcttttttgcctttttctgcttct 107874
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>gb|AC129209.4| Mus musculus BAC clone RP24-318B5 from chromosome Y, complete
            sequence
          Length = 177935

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 177  gatttcttgcttgcctttttctgcttct 204
            ||||||||  ||||||||||||||||||
Sbjct: 6168 gatttcttttttgcctttttctgcttct 6195
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>gb|AC145742.3| Mus musculus BAC clone RP24-225F21 from chromosome Y, complete sequence
          Length = 183572

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 177   gatttcttgcttgcctttttctgcttct 204
             ||||||||  ||||||||||||||||||
Sbjct: 28961 gatttcttttttgcctttttctgcttct 28988
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>gb|AC160564.2| Pan troglodytes BAC clone CH251-542C24 from chromosome 5, complete
              sequence
          Length = 177047

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    tttcttgcttgcctttttct 198
              ||||||||||||||||||||
Sbjct: 173915 tttcttgcttgcctttttct 173896
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>gb|AC175494.3| Mus musculus BAC clone RP24-75G20 from chromosome y, complete sequence
          Length = 229858

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 177    gatttcttgcttgcctttttctgcttct 204
              ||||||||  ||||||||||||||||||
Sbjct: 226775 gatttcttttttgcctttttctgcttct 226802
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>gb|AC147126.2| Mus musculus BAC clone RP24-561J22 from chromosome Y, complete sequence
          Length = 141049

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 177   gatttcttgcttgcctttttctgcttct 204
             ||||||||  ||||||||||||||||||
Sbjct: 81467 gatttcttttttgcctttttctgcttct 81494
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>gb|AC130834.4| Mus musculus BAC clone RP24-119M1 from chromosome Y, complete sequence
          Length = 189883

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 177    gatttcttgcttgcctttttctgcttct 204
              ||||||||  ||||||||||||||||||
Sbjct: 167127 gatttcttttttgcctttttctgcttct 167154
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>gb|AC144855.3| Mus musculus BAC clone RP24-179H2 from chromosome Y, complete sequence
          Length = 152731

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 177    gatttcttgcttgcctttttctgcttct 204
              ||||||||  ||||||||||||||||||
Sbjct: 102603 gatttcttttttgcctttttctgcttct 102630
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>gb|AC140394.3| Mus musculus BAC clone RP24-181E19 from chromosome Y, complete sequence
          Length = 163379

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 177    gatttcttgcttgcctttttctgcttct 204
              ||||||||  ||||||||||||||||||
Sbjct: 153554 gatttcttttttgcctttttctgcttct 153527
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>gb|AC147159.2| Mus musculus BAC clone RP24-259B7 from chromosome Y, complete sequence
          Length = 150659

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 177   gatttcttgcttgcctttttctgcttct 204
             ||||||||  ||||||||||||||||||
Sbjct: 45795 gatttcttttttgcctttttctgcttct 45822
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>gb|AC125086.4| Mus musculus BAC clone RP24-137C4 from chromosome 18, complete sequence
          Length = 120722

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   tttcttgcttgcctttttct 198
             ||||||||||||||||||||
Sbjct: 20576 tttcttgcttgcctttttct 20595
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>gb|AC125229.3| Mus musculus BAC clone RP23-45P1 from 5, complete sequence
          Length = 167771

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   ttttttgatttcttgcttgc 190
             ||||||||||||||||||||
Sbjct: 16322 ttttttgatttcttgcttgc 16341
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>emb|BX005211.21| Zebrafish DNA sequence from clone CH211-128A7 in linkage group 14,
            complete sequence
          Length = 191332

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 31   atcttgcacagaaactgcaa 50
            ||||||||||||||||||||
Sbjct: 6606 atcttgcacagaaactgcaa 6625
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>emb|AL365254.14| Human DNA sequence from clone RP11-420H21 on chromosome 1, complete
             sequence
          Length = 157721

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   tcaatctctcattctcagaa 275
             ||||||||||||||||||||
Sbjct: 57920 tcaatctctcattctcagaa 57901
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>gb|AC175667.3| Mus musculus BAC clone RP24-372I14 from chromosome y, complete sequence
          Length = 167889

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 177   gatttcttgcttgcctttttctgcttct 204
             ||||||||  ||||||||||||||||||
Sbjct: 38062 gatttcttttttgcctttttctgcttct 38089
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>gb|AY327045.1| Oryza sativa (japonica cultivar-group) disease-resistant protein
           DS3 mRNA, complete cds
          Length = 2913

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tacaacagaattgggggaca 110
           ||||||||||||||||||||
Sbjct: 758 tacaacagaattgggggaca 777
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>ref|XM_781130.1| PREDICTED: Strongylocentrotus purpuratus similar to pericentriolar
            material 1 (LOC581113), mRNA
          Length = 6777

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  cttctctctcagttcatctt 327
            ||||||||||||||||||||
Sbjct: 2973 cttctctctcagttcatctt 2954
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>gb|AC010107.7| Drosophila melanogaster 3L BAC RP98-2B1 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 181063

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 257   caatctctcattctcagaaa 276
             ||||||||||||||||||||
Sbjct: 83306 caatctctcattctcagaaa 83325
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>gb|AC182448.2| Mus musculus BAC clone RP24-490J20 from chromosome y, complete sequence
          Length = 222797

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 177   gatttcttgcttgcctttttctgcttct 204
             ||||||||  ||||||||||||||||||
Sbjct: 88497 gatttcttttttgcctttttctgcttct 88470
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>gb|AC179922.3| Mus musculus BAC clone RP24-571K5 from chromosome y, complete sequence
          Length = 151241

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 177   gatttcttgcttgcctttttctgcttct 204
             ||||||||  ||||||||||||||||||
Sbjct: 24201 gatttcttttttgcctttttctgcttct 24228
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>gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete
             sequence
          Length = 87978

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 195   ttctgcttcttgtattccttgtac 218
             ||||||||||||||||| ||||||
Sbjct: 57617 ttctgcttcttgtattcattgtac 57640
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>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OJ1003C07, from chromosome 10, complete
             sequence
          Length = 115188

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tacaacagaattgggggaca 110
             ||||||||||||||||||||
Sbjct: 16362 tacaacagaattgggggaca 16381
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>gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
             OJ1208D02 from chromosome 10, complete sequence
          Length = 120132

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    tacaacagaattgggggaca 110
             ||||||||||||||||||||
Sbjct: 10815 tacaacagaattgggggaca 10796
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>gb|AC010202.6| Homo sapiens 12q BAC RP11-210L7 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 170004

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   tctctcagttcatcttcgcc 331
             ||||||||||||||||||||
Sbjct: 13762 tctctcagttcatcttcgcc 13743
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>gb|AC182761.2| Mus musculus BAC clone RP24-91P5 from chromosome y, complete sequence
          Length = 212528

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 177    gatttcttgcttgcctttttctgcttct 204
              ||||||||  ||||||||||||||||||
Sbjct: 160781 gatttcttttttgcctttttctgcttct 160754
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>gb|AC091220.3| Drosophila melanogaster 3L BAC RP98-7E7 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 179838

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   caatctctcattctcagaaa 276
             ||||||||||||||||||||
Sbjct: 26806 caatctctcattctcagaaa 26787
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>gb|AC091970.3| Homo sapiens chromosome 5 clone RP11-509B9, complete sequence
          Length = 170119

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   tttcttgcttgcctttttct 198
             ||||||||||||||||||||
Sbjct: 46047 tttcttgcttgcctttttct 46028
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>gb|AC175818.2| Mus musculus BAC clone RP24-566J3 from chromosome y, complete sequence
          Length = 125354

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 177    gatttcttgcttgcctttttctgcttct 204
              ||||||||  ||||||||||||||||||
Sbjct: 105027 gatttcttttttgcctttttctgcttct 105000
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>emb|BX323835.9| Zebrafish DNA sequence from clone DKEYP-22F6 in linkage group 14,
            complete sequence
          Length = 172378

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 31   atcttgcacagaaactgcaa 50
            ||||||||||||||||||||
Sbjct: 2057 atcttgcacagaaactgcaa 2076
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>gb|AC099694.12| Mus musculus, clone RP23-195D9, complete sequence
          Length = 191204

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 174    tttgatttcttgcttgcctttttctgct 201
              |||| |||||||||||||||||| ||||
Sbjct: 148775 tttggtttcttgcttgcctttttttgct 148802
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>gb|AC175461.3| Mus musculus BAC clone RP24-64J17 from chromosome y, complete sequence
          Length = 219754

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 177    gatttcttgcttgcctttttctgcttct 204
              ||||||||  ||||||||||||||||||
Sbjct: 107815 gatttcttttttgcctttttctgcttct 107788
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 91       tacaacagaattgggggaca 110
                ||||||||||||||||||||
Sbjct: 11142695 tacaacagaattgggggaca 11142676
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>emb|BX819677.1|CNS0AA0I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS16ZE05 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1870

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 195  ttctgcttcttgtattccttgtac 218
            ||||||||||||||||| ||||||
Sbjct: 1710 ttctgcttcttgtattcattgtac 1687
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>emb|BX819992.1|CNS0A8EY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS58ZA01 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1206

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 195  ttctgcttcttgtattccttgtac 218
            ||||||||||||||||| ||||||
Sbjct: 1065 ttctgcttcttgtattcattgtac 1042
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>gb|AC145572.4| Mus musculus BAC clone RP24-95P13 from chromosome y, complete sequence
          Length = 181745

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 177    gatttcttgcttgcctttttctgcttct 204
              ||||||||  ||||||||||||||||||
Sbjct: 134976 gatttcttttttgcctttttctgcttct 134949
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>gb|AC021849.5| Homo sapiens BAC clone RP11-366G5 from 2, complete sequence
          Length = 168710

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 186   cttgcctttttctgcttcttgtattcct 213
             ||||||||||| || |||||||||||||
Sbjct: 28661 cttgcctttttatgtttcttgtattcct 28634
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>gb|AC021058.16|AC021058 Homo sapiens 12 BAC RP11-373H1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168134

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   tctctcagttcatcttcgcc 331
             ||||||||||||||||||||
Sbjct: 70506 tctctcagttcatcttcgcc 70525
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>gb|AC078847.2|AC078847 Homo sapiens chromosome 7 clone RP11-3M15, complete sequence
          Length = 170919

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    tttctgcttcttgtattcct 213
              ||||||||||||||||||||
Sbjct: 106297 tttctgcttcttgtattcct 106316
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>gb|AY087681.1| Arabidopsis thaliana clone 37620 mRNA, complete sequence
          Length = 1308

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 195  ttctgcttcttgtattccttgtac 218
            ||||||||||||||||| ||||||
Sbjct: 1114 ttctgcttcttgtattcattgtac 1091
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>gb|AC175033.2| Mus musculus BAC clone RP24-283I7 from chromosome y, complete sequence
          Length = 153678

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 177   gatttcttgcttgcctttttctgcttct 204
             ||||||||  ||||||||||||||||||
Sbjct: 18865 gatttcttttttgcctttttctgcttct 18838
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>emb|BX004764.8| Zebrafish DNA sequence from clone DKEY-162L4 in linkage group 3,
             complete sequence
          Length = 238651

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 18    atgtagcaattgtatcttgcacag 41
             ||||||||||||| ||||||||||
Sbjct: 84246 atgtagcaattgtttcttgcacag 84269
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>dbj|BS000085.1| Pan troglodytes chromosome 22 clone:RP43-164H01, map 22, complete
             sequences
          Length = 171357

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   cgttttttgatttcttgctt 188
             ||||||||||||||||||||
Sbjct: 62608 cgttttttgatttcttgctt 62589
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>dbj|AK100740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118D09, full
           insert sequence
          Length = 4244

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tacaacagaattgggggaca 110
           ||||||||||||||||||||
Sbjct: 855 tacaacagaattgggggaca 874
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>gb|AC134599.4| Mus musculus BAC clone RP23-192O14 from 12, complete sequence
          Length = 208842

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   ttcttgcttgcctttttctg 199
             ||||||||||||||||||||
Sbjct: 90582 ttcttgcttgcctttttctg 90563
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>gb|AE003551.3| Drosophila melanogaster chromosome 3L, section 34 of 83 of the complete
              sequence
          Length = 285860

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    caatctctcattctcagaaa 276
              ||||||||||||||||||||
Sbjct: 211388 caatctctcattctcagaaa 211369
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>dbj|AP001686.1| Homo sapiens genomic DNA, chromosome 21q, section 30/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    cgttttttgatttcttgctt 188
              ||||||||||||||||||||
Sbjct: 143693 cgttttttgatttcttgctt 143674
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 91       tacaacagaattgggggaca 110
                ||||||||||||||||||||
Sbjct: 11149135 tacaacagaattgggggaca 11149116
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>gb|AC145575.3| Mus musculus BAC clone RP24-103M14 from Y, complete sequence
          Length = 152955

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 177   gatttcttgcttgcctttttctgcttct 204
             ||||||||  ||||||||||||||||||
Sbjct: 92300 gatttcttttttgcctttttctgcttct 92273
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>gb|AC140421.4| Mus musculus BAC clone RP24-441H14 from Y, complete sequence
          Length = 204088

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 177   gatttcttgcttgcctttttctgcttct 204
             ||||||||  ||||||||||||||||||
Sbjct: 99527 gatttcttttttgcctttttctgcttct 99554
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>gb|AC148013.3| Mus musculus BAC clone RP23-134C2 from 18, complete sequence
          Length = 192504

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    tttcttgcttgcctttttct 198
              ||||||||||||||||||||
Sbjct: 126979 tttcttgcttgcctttttct 126998
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>emb|CR956639.4| Pig DNA sequence from clone CH242-279P20 on chromosome 17, complete
             sequence
          Length = 50643

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tgtatcttgcacagaaactg 47
             ||||||||||||||||||||
Sbjct: 15662 tgtatcttgcacagaaactg 15643
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>emb|BX649554.17| Zebrafish DNA sequence from clone DKEYP-71F10 in linkage group 3,
            complete sequence
          Length = 99813

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 18   atgtagcaattgtatcttgcacag 41
            ||||||||||||| ||||||||||
Sbjct: 4303 atgtagcaattgtttcttgcacag 4280
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>emb|AL844562.3| Mouse DNA sequence from clone RP23-230F7 on chromosome 2, complete
              sequence
          Length = 208058

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    gctcgtgtggtaaaaatcca 139
              ||||||||||||||||||||
Sbjct: 108036 gctcgtgtggtaaaaatcca 108017
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>dbj|AP000949.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B606F19,
              LL56-APP region, complete sequence
          Length = 146670

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    cgttttttgatttcttgctt 188
              ||||||||||||||||||||
Sbjct: 146507 cgttttttgatttcttgctt 146488
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>dbj|AP001116.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B677J23,
            LL56-APP region, complete sequence
          Length = 93290

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 169  cgttttttgatttcttgctt 188
            ||||||||||||||||||||
Sbjct: 1735 cgttttttgatttcttgctt 1716


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,424,812
Number of Sequences: 3902068
Number of extensions: 3424812
Number of successful extensions: 71389
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71260
Number of HSP's gapped (non-prelim): 129
length of query: 344
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 322
effective length of database: 17,147,199,772
effective search space: 5521398326584
effective search space used: 5521398326584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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