>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA cleavage|
            complex II protein Pcf11) (Fragment)
          Length = 1654

 Score = 37.0 bits (84), Expect = 0.018
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -3

Query: 392  TCALCQEPFEDFYSDETEEWMYKGAVYMNAPDGNIVGLQRSHLGPIVHSKCQSGPSNIS 216
            +C +CQE FE ++ +E EEW  K A+ ++              G I H  C     N S
Sbjct: 1541 SCEICQEQFEQYWDEEEEEWHLKNAIRVD--------------GKIYHPSCYEDYQNTS 1585

>YRR2_CAEEL (Q09345) Hypothetical protein R144.2|
          Length = 823

 Score = 34.7 bits (78), Expect = 0.092
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 389 CALCQEPFEDFYSDETEEWMYKGAVYMNAPDGNIVGLQRSHLGPIVHSKCQS 234
           C++C E F+++Y D+ E W  +  V ++              G IVHS C S
Sbjct: 762 CSVCGEKFDEYYDDDEETWRLRDTVNVH--------------GKIVHSACAS 799

>YD14_SCHPO (Q10237) Hypothetical protein C4G9.04c in chromosome I|
          Length = 638

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = -3

Query: 389 CALCQEPFEDFYSDETEEWMYKGAVYMNAPDGNIVGLQRSHLGPIVHSKCQSGPSNIS*V 210
           C +CQE F+  + +E E W++  AV       +   LQ        HS   +   N++  
Sbjct: 519 CPICQEKFQSVWHEEAEVWVFMNAVEEEGRIFHATCLQEVRPSENKHSNTNTSTQNLAEA 578

Query: 209 GVAGTL 192
            V+  +
Sbjct: 579 AVSSNI 584

>PCF11_YEAST (P39081) Protein PCF11 (protein 1 of CF I)|
          Length = 626

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 389 CALCQEPFEDFYSDETEEWMYKGAVYMN 306
           C +C+E     Y +E+ EW++K  + +N
Sbjct: 564 CPICKETVTGVYDEESGEWVWKNTIEVN 591

>ATCY_SCHPO (O14022) Probable cation-transporting ATPase C29A4.19c (EC 3.6.3.-)|
          Length = 1096

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 327 VHPLFSFIAVEILKWL---LT*STCCLVFI 407
           +HP + F AV +L WL       +CC+VFI
Sbjct: 200 LHPFYLFQAVSVLIWLCDSFVFYSCCIVFI 229

>ARAB1_STAS1 (Q49ZR6) Ribulokinase 1 (EC 2.7.1.16)|
          Length = 538

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 24/71 (33%), Positives = 34/71 (47%)
 Frame = -3

Query: 380 CQEPFEDFYSDETEEWMYKGAVYMNAPDGNIVGLQRSHLGPIVHSKCQSGPSNIS*VGVA 201
           C   F+ FY+ ET+ + Y    +  A D          L  IV +KC+S   NI     A
Sbjct: 198 CGIGFKGFYN-ETDGFNYS---FFEAID--------QELPEIVKTKCESPVVNIG--ESA 243

Query: 200 GTLAPLFQFLW 168
           G+L+P +Q LW
Sbjct: 244 GSLSPYYQNLW 254


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,364,787
Number of Sequences: 219361
Number of extensions: 1469329
Number of successful extensions: 2893
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2889
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)