ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480436.1| Oryza sativa (japonica cultivar-group), mRNA 244 2e-61
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 244 2e-61
3dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic D... 244 2e-61
4dbj|AK099689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 244 2e-61
5ref|NM_148232.2| Arabidopsis thaliana unknown protein AT4G04885 ... 86 1e-13
6emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, ... 86 1e-13
7dbj|AK119152.1| Arabidopsis thaliana At4g04885 mRNA for unknown ... 86 1e-13
8gb|AF118223.2|T4B21 Arabidopsis thaliana BAC T4B21 86 1e-13
9dbj|AP004568.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
10emb|AL441988.11| Human DNA sequence from clone RP11-348I14 on ch... 46 0.091
11dbj|AP006663.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.091
12emb|AL117574.1|HSM801105 Homo sapiens mRNA; cDNA DKFZp434L2221 (... 46 0.091
13emb|AL161626.20| Human DNA sequence from clone RP11-214N16 on ch... 44 0.36
14emb|CT010524.6| Mouse DNA sequence from clone RP23-341L7 on chro... 42 1.4
15gb|U95743.1|HUU95743 Homo sapiens chromosome 16 BAC clone CIT987... 42 1.4
16gb|AC074336.14| Mus musculus Strain C57BL6/J chromosome 1 BAC, R... 42 1.4
17gb|AC116618.4| Homo sapiens BAC clone RP11-98L17 from 4, complet... 42 1.4
18gb|AC009173.9| Homo sapiens chromosome 16 clone RP11-99H5, compl... 42 1.4
19gb|AC154591.2| Mus musculus BAC clone RP23-370M19 from 16, compl... 42 1.4
20ref|NM_123728.2| Arabidopsis thaliana unknown protein AT5G43620 ... 40 5.6
21gb|BT025626.1| Arabidopsis thaliana At5g43620 mRNA, complete cds 40 5.6
22ref|XM_323475.1| Neurospora crassa OR74A related to TRANSCRIPTIO... 40 5.6
23ref|XM_956199.1| Neurospora crassa OR74A related to TRANSCRIPTIO... 40 5.6
24emb|CR847924.7| Zebrafish DNA sequence from clone CH211-261H11 i... 40 5.6
25gb|AC124724.4| Mus musculus BAC clone RP23-446L16 from chromosom... 40 5.6
26gb|AC123839.2| Mus musculus BAC clone RP23-392K4 from 17, comple... 40 5.6
27emb|CR759903.8| Zebrafish DNA sequence from clone CH211-138E6 in... 40 5.6
28emb|AL356503.18| Human DNA sequence from clone RP13-159A24 on ch... 40 5.6
29gb|AC103018.7| Rattus norvegicus 1 CH230-196F22 (Children's Hosp... 40 5.6
30emb|AL513463.1|NC9G6 Neurospora crassa DNA linkage group V Cosmi... 40 5.6
31emb|CR450726.6| Zebrafish DNA sequence from clone CH211-149F21 i... 40 5.6
32gb|AC009711.10| Homo sapiens chromosome 15, clone RP11-356B18, c... 40 5.6
33gb|AC107990.5| Homo sapiens chromosome 18, clone RP11-103A19, co... 40 5.6
34gb|AC098847.4| Homo sapiens chromosome 18, clone RP11-824M15, co... 40 5.6
35emb|BX248080.21| Zebrafish DNA sequence from clone CH211-226C1 i... 40 5.6
36gb|AC160407.6| Mus musculus 10 BAC RP24-445P5 (Roswell Park Canc... 40 5.6
37gb|BT023453.1| Arabidopsis thaliana At5g43620 gene, complete cds 40 5.6
38gb|AC090181.9| Homo sapiens chromosome 15, clone RP11-797A18, co... 40 5.6
39emb|AL954845.21| Zebrafish DNA sequence from clone DKEY-30H3, co... 40 5.6
40gb|AC021049.12| Homo sapiens 12 BAC RP11-904M10 (Roswell Park Ca... 40 5.6
41emb|BX649622.7| Zebrafish DNA sequence from clone CH211-128B10 i... 40 5.6
42dbj|AK175583.1| Arabidopsis thaliana mRNA for S-locus protein 4-... 40 5.6
43gb|AC108814.22| Mus musculus chromosome 19, clone RP23-235H21, c... 40 5.6
44dbj|AB016875.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.6
45gb|U83833.1|GGU83833 Gallus gallus T-cell receptor alpha chain g... 40 5.6
46emb|AL928901.8| Zebrafish DNA sequence from clone CH211-155M12 i... 40 5.6 
>ref|XM_480436.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3078

 Score =  244 bits (123), Expect = 2e-61
 Identities = 171/187 (91%)
 Strand = Plus / Minus

                                                                        
Query: 232  ccagattgacatttggaatggacaataggccccaaatgcgacctttggagaccaacaata 291
            |||||| ||||||| | |||||||||||| ||||| ||||||||||  |||||| |||||
Sbjct: 3046 ccagatagacatttagcatggacaataggtcccaactgcgacctttctagaccaccaata 2987

                                                                        
Query: 292  ttaccatcaggtgcattcatgtaaactgcacctttgtacatccactcttcagtttcatcg 351
            || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 2986 tttccatctggtgcattcatataaactgcacctttgtacatccactcttcagtttcatca 2927

                                                                        
Query: 352  ctgtagaaatcctcaaatggctcttgacataaagcacatgttgtttggttttcatcggca 411
            ||||||||||| |||||||||||||||||||||||||||||||||||||  ||||| |||
Sbjct: 2926 ctgtagaaatcttcaaatggctcttgacataaagcacatgttgtttggtcctcatcagca 2867

                   
Query: 412  ggaacag 418
            |||||||
Sbjct: 2866 ggaacag 2860
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  244 bits (123), Expect = 2e-61
 Identities = 171/187 (91%)
 Strand = Plus / Plus

                                                                           
Query: 232     ccagattgacatttggaatggacaataggccccaaatgcgacctttggagaccaacaata 291
               |||||| ||||||| | |||||||||||| ||||| ||||||||||  |||||| |||||
Sbjct: 5114652 ccagatagacatttagcatggacaataggtcccaactgcgacctttctagaccaccaata 5114711

                                                                           
Query: 292     ttaccatcaggtgcattcatgtaaactgcacctttgtacatccactcttcagtttcatcg 351
               || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 5114712 tttccatctggtgcattcatataaactgcacctttgtacatccactcttcagtttcatca 5114771

                                                                           
Query: 352     ctgtagaaatcctcaaatggctcttgacataaagcacatgttgtttggttttcatcggca 411
               ||||||||||| |||||||||||||||||||||||||||||||||||||  ||||| |||
Sbjct: 5114772 ctgtagaaatcttcaaatggctcttgacataaagcacatgttgtttggtcctcatcagca 5114831

                      
Query: 412     ggaacag 418
               |||||||
Sbjct: 5114832 ggaacag 5114838



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 46/51 (90%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                  
Query: 110     actaagcataccaaaatgtgatttctccagtaattttacatgtcttgtcta 160
               ||||||||||||||||| || | |||||||| | |||||||||||||||||
Sbjct: 5113000 actaagcataccaaaatctgctctctccagt-agtttacatgtcttgtcta 5113049
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>dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0020B10
          Length = 136175

 Score =  244 bits (123), Expect = 2e-61
 Identities = 171/187 (91%)
 Strand = Plus / Plus

                                                                         
Query: 232   ccagattgacatttggaatggacaataggccccaaatgcgacctttggagaccaacaata 291
             |||||| ||||||| | |||||||||||| ||||| ||||||||||  |||||| |||||
Sbjct: 64416 ccagatagacatttagcatggacaataggtcccaactgcgacctttctagaccaccaata 64475

                                                                         
Query: 292   ttaccatcaggtgcattcatgtaaactgcacctttgtacatccactcttcagtttcatcg 351
             || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 64476 tttccatctggtgcattcatataaactgcacctttgtacatccactcttcagtttcatca 64535

                                                                         
Query: 352   ctgtagaaatcctcaaatggctcttgacataaagcacatgttgtttggttttcatcggca 411
             ||||||||||| |||||||||||||||||||||||||||||||||||||  ||||| |||
Sbjct: 64536 ctgtagaaatcttcaaatggctcttgacataaagcacatgttgtttggtcctcatcagca 64595

                    
Query: 412   ggaacag 418
             |||||||
Sbjct: 64596 ggaacag 64602



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 46/51 (90%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                
Query: 110   actaagcataccaaaatgtgatttctccagtaattttacatgtcttgtcta 160
             ||||||||||||||||| || | |||||||| | |||||||||||||||||
Sbjct: 62764 actaagcataccaaaatctgctctctccagt-agtttacatgtcttgtcta 62813
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>dbj|AK099689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073B17, full
            insert sequence
          Length = 3320

 Score =  244 bits (123), Expect = 2e-61
 Identities = 171/187 (91%)
 Strand = Plus / Minus

                                                                        
Query: 232  ccagattgacatttggaatggacaataggccccaaatgcgacctttggagaccaacaata 291
            |||||| ||||||| | |||||||||||| ||||| ||||||||||  |||||| |||||
Sbjct: 3046 ccagatagacatttagcatggacaataggtcccaactgcgacctttctagaccaccaata 2987

                                                                        
Query: 292  ttaccatcaggtgcattcatgtaaactgcacctttgtacatccactcttcagtttcatcg 351
            || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 2986 tttccatctggtgcattcatataaactgcacctttgtacatccactcttcagtttcatca 2927

                                                                        
Query: 352  ctgtagaaatcctcaaatggctcttgacataaagcacatgttgtttggttttcatcggca 411
            ||||||||||| |||||||||||||||||||||||||||||||||||||  ||||| |||
Sbjct: 2926 ctgtagaaatcttcaaatggctcttgacataaagcacatgttgtttggtcctcatcagca 2867

                   
Query: 412  ggaacag 418
            |||||||
Sbjct: 2866 ggaacag 2860



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 46/51 (90%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 110  actaagcataccaaaatgtgatttctccagtaattttacatgtcttgtcta 160
            ||||||||||||||||| || | |||||||| | |||||||||||||||||
Sbjct: 3163 actaagcataccaaaatctgctctctccagt-agtttacatgtcttgtcta 3114
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>ref|NM_148232.2| Arabidopsis thaliana unknown protein AT4G04885 mRNA, complete cds
          Length = 3102

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                        
Query: 298  tcaggtgcattcatgtaaactgcacctttgtacatccactcttcagtttcatcgctgtag 357
            ||||| ||||||||||| || ||||||||||||||||| || || |||||||| || || 
Sbjct: 2417 tcaggagcattcatgtataccgcacctttgtacatccattcctcggtttcatcactataa 2358

                                                                       
Query: 358  aaatcctcaaatggctcttgacataaagcacatgttgtttggttttcatcggcaggaac 416
            || || |||||||||||   |||||| |||||||  ||||||| |||||| ||||||||
Sbjct: 2357 aagtcttcaaatggctcaccacataatgcacatgaagtttggtcttcatctgcaggaac 2299
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>emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14
          Length = 198563

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                        
Query: 298  tcaggtgcattcatgtaaactgcacctttgtacatccactcttcagtttcatcgctgtag 357
            ||||| ||||||||||| || ||||||||||||||||| || || |||||||| || || 
Sbjct: 7191 tcaggagcattcatgtataccgcacctttgtacatccattcctcggtttcatcactataa 7132

                                                                       
Query: 358  aaatcctcaaatggctcttgacataaagcacatgttgtttggttttcatcggcaggaac 416
            || || |||||||||||   |||||| |||||||  ||||||| |||||| ||||||||
Sbjct: 7131 aagtcttcaaatggctcaccacataatgcacatgaagtttggtcttcatctgcaggaac 7073
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>dbj|AK119152.1| Arabidopsis thaliana At4g04885 mRNA for unknown protein, complete
            cds, clone: RAFL21-50-C04
          Length = 2713

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                        
Query: 298  tcaggtgcattcatgtaaactgcacctttgtacatccactcttcagtttcatcgctgtag 357
            ||||| ||||||||||| || ||||||||||||||||| || || |||||||| || || 
Sbjct: 2399 tcaggagcattcatgtataccgcacctttgtacatccattcctcggtttcatcactataa 2340

                                                                       
Query: 358  aaatcctcaaatggctcttgacataaagcacatgttgtttggttttcatcggcaggaac 416
            || || |||||||||||   |||||| |||||||  ||||||| |||||| ||||||||
Sbjct: 2339 aagtcttcaaatggctcaccacataatgcacatgaagtttggtcttcatctgcaggaac 2281
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>gb|AF118223.2|T4B21 Arabidopsis thaliana BAC T4B21
          Length = 91470

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                         
Query: 298   tcaggtgcattcatgtaaactgcacctttgtacatccactcttcagtttcatcgctgtag 357
             ||||| ||||||||||| || ||||||||||||||||| || || |||||||| || || 
Sbjct: 90514 tcaggagcattcatgtataccgcacctttgtacatccattcctcggtttcatcactataa 90455

                                                                        
Query: 358   aaatcctcaaatggctcttgacataaagcacatgttgtttggttttcatcggcaggaac 416
             || || |||||||||||   |||||| |||||||  ||||||| |||||| ||||||||
Sbjct: 90454 aagtcttcaaatggctcaccacataatgcacatgaagtttggtcttcatctgcaggaac 90396
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>dbj|AP004568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0547A06
          Length = 150922

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 46/51 (90%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                 
Query: 110    actaagcataccaaaatgtgatttctccagtaattttacatgtcttgtcta 160
              ||||||||||||||||| || | |||||||| | |||||||||||||||||
Sbjct: 150557 actaagcataccaaaatctgctctctccagt-agtttacatgtcttgtcta 150606
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>emb|AL441988.11| Human DNA sequence from clone RP11-348I14 on chromosome 20 Contains the
             5' end of a novel gene, the C20orf80 gene for a protein
             similar to FSHD region gene 1 (FRG1), the MLLT10L gene for
             myeloid/lymphoid or mixed-lineage leukemia (trithorax
             homolog, Drosophila) (translocated to 10)-like pseudogene,
             a novel gene and two CpG islands, complete sequence
          Length = 69918

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 37    aagtattttacaattttacactactat 63
             |||||||||| ||||||||||||||||
Sbjct: 32018 aagtattttataattttacactactat 32044
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>dbj|AP006663.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT48G05, TM0358,
              complete sequence
          Length = 111995

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 74/91 (81%)
 Strand = Plus / Plus

                                                                          
Query: 328    tacatccactcttcagtttcatcgctgtagaaatcctcaaatggctcttgacataaagca 387
              ||||||||||| || |||||||| ||||| || || ||||| || |||  |||||| |||
Sbjct: 108356 tacatccactcctccgtttcatcactgtaaaactcatcaaaaggttctccacataatgca 108415

                                             
Query: 388    catgttgtttggttttcatcggcaggaacag 418
              |||||  | ||||  ||||| ||||||||||
Sbjct: 108416 catgtattctggtcctcatcagcaggaacag 108446
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>emb|AL117574.1|HSM801105 Homo sapiens mRNA; cDNA DKFZp434L2221 (from clone DKFZp434L2221)
          Length = 3004

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 37   aagtattttacaattttacactactat 63
            |||||||||| ||||||||||||||||
Sbjct: 1666 aagtattttataattttacactactat 1692
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>emb|AL161626.20| Human DNA sequence from clone RP11-214N16 on chromosome 9 Contains the
             3' end of the GCNT1 gene for glucosaminyl (N-acetyl)
             transferase 1 core 2
             (beta-1,6-N-acetylglucosaminyltransferase), a
             peptidylprolyl isomerase A (cyclophilin A) (PPIA)
             pseudogene and the 3' end of the KIAA0376 gene, complete
             sequence
          Length = 183858

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 95    caggggaggggggaaactaagc 116
             ||||||||||||||||||||||
Sbjct: 14857 caggggaggggggaaactaagc 14836
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>emb|CT010524.6| Mouse DNA sequence from clone RP23-341L7 on chromosome 16, complete
             sequence
          Length = 233599

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 389   atgttgtttggttttcatcgg 409
             |||||||||||||||||||||
Sbjct: 20486 atgttgtttggttttcatcgg 20506
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>gb|U95743.1|HUU95743 Homo sapiens chromosome 16 BAC clone CIT987-SK65D3, complete sequence
          Length = 192730

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 236    attgacatttggaatggacaa 256
              |||||||||||||||||||||
Sbjct: 167019 attgacatttggaatggacaa 167039
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>gb|AC074336.14| Mus musculus Strain C57BL6/J chromosome 1 BAC, RP23-366C17, Complete
              Sequence, complete sequence
          Length = 217768

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 171    aagaaactgaaacaatggggcaagg 195
              ||||||||||||||||| |||||||
Sbjct: 110192 aagaaactgaaacaatgtggcaagg 110216
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>gb|AC116618.4| Homo sapiens BAC clone RP11-98L17 from 4, complete sequence
          Length = 153040

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 37     aagtattttacaattttacactact 61
              |||||||||| ||||||||||||||
Sbjct: 117813 aagtattttataattttacactact 117837
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>gb|AC009173.9| Homo sapiens chromosome 16 clone RP11-99H5, complete sequence
          Length = 149842

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 236   attgacatttggaatggacaa 256
             |||||||||||||||||||||
Sbjct: 16014 attgacatttggaatggacaa 16034
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>gb|AC154591.2| Mus musculus BAC clone RP23-370M19 from 16, complete sequence
          Length = 196385

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 389   atgttgtttggttttcatcgg 409
             |||||||||||||||||||||
Sbjct: 98359 atgttgtttggttttcatcgg 98339
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>ref|NM_123728.2| Arabidopsis thaliana unknown protein AT5G43620 mRNA, complete cds
          Length = 1432

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                        
Query: 316  actgcacctttgtacatccactcttcagtttcatcgctgtagaaatcctcaaatggctct 375
            |||||| ||||||||||||| || |||| ||||| |||  |||| || ||||| ||||||
Sbjct: 1219 actgcatctttgtacatccagtcatcagcttcatggctaaagaactcttcaaacggctct 1160
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>gb|BT025626.1| Arabidopsis thaliana At5g43620 mRNA, complete cds
          Length = 1233

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                        
Query: 316  actgcacctttgtacatccactcttcagtttcatcgctgtagaaatcctcaaatggctct 375
            |||||| ||||||||||||| || |||| ||||| |||  |||| || ||||| ||||||
Sbjct: 1100 actgcatctttgtacatccagtcatcagcttcatggctaaagaactcttcaaacggctct 1041
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>ref|XM_323475.1| Neurospora crassa OR74A related to TRANSCRIPTION INITIATION FACTOR
            TFIID 100 KDA SUBUNIT [MIPS] (NCU04136.1) partial mRNA
          Length = 2193

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 294  accatcaggtgcattcatgtaaactgcacctt 325
            |||| ||||| ||||| |||||||||||||||
Sbjct: 2162 accaccaggttcattcttgtaaactgcacctt 2131
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>ref|XM_956199.1| Neurospora crassa OR74A related to TRANSCRIPTION INITIATION FACTOR
            TFIID 100 KDA SUBUNIT [MIPS] (NCU04136.1) partial mRNA
          Length = 2193

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 294  accatcaggtgcattcatgtaaactgcacctt 325
            |||| ||||| ||||| |||||||||||||||
Sbjct: 2162 accaccaggttcattcttgtaaactgcacctt 2131
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>emb|CR847924.7| Zebrafish DNA sequence from clone CH211-261H11 in linkage group 18,
             complete sequence
          Length = 150088

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    attaacattctattcaaact 89
             ||||||||||||||||||||
Sbjct: 52133 attaacattctattcaaact 52152
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>gb|AC124724.4| Mus musculus BAC clone RP23-446L16 from chromosome 19, complete sequence
          Length = 179952

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 91     ttgccaggggaggggggaaactaa 114
              ||||||||||||||||||| ||||
Sbjct: 109316 ttgccaggggaggggggaatctaa 109339
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>gb|AC123839.2| Mus musculus BAC clone RP23-392K4 from 17, complete sequence
          Length = 204402

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    taattttacatgtcttgtct 159
              ||||||||||||||||||||
Sbjct: 166517 taattttacatgtcttgtct 166498
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>emb|CR759903.8| Zebrafish DNA sequence from clone CH211-138E6 in linkage group 9,
             complete sequence
          Length = 168689

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     gcaagttactcatgctccat 25
             ||||||||||||||||||||
Sbjct: 97112 gcaagttactcatgctccat 97131
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>emb|AL356503.18| Human DNA sequence from clone RP13-159A24 on chromosome Xq27.1-28,
             complete sequence
          Length = 147043

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   ctttgtacatccactcttca 342
             ||||||||||||||||||||
Sbjct: 65867 ctttgtacatccactcttca 65886
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>gb|AC103018.7| Rattus norvegicus 1 CH230-196F22 (Children's Hospital Oakland Research
             Institute) complete sequence
          Length = 212568

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     agagcaagttactcatgctc 22
             ||||||||||||||||||||
Sbjct: 85130 agagcaagttactcatgctc 85111
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>emb|AL513463.1|NC9G6 Neurospora crassa DNA linkage group V Cosmid contig 9G6
          Length = 125561

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 294   accatcaggtgcattcatgtaaactgcacctt 325
             |||| ||||| ||||| |||||||||||||||
Sbjct: 73050 accaccaggttcattcttgtaaactgcacctt 73081
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>emb|CR450726.6| Zebrafish DNA sequence from clone CH211-149F21 in linkage group 5,
             complete sequence
          Length = 93211

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 375   ttgacataaagcacatgttgtttg 398
             |||||||||||||||| |||||||
Sbjct: 34352 ttgacataaagcacatcttgtttg 34329
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>gb|AC009711.10| Homo sapiens chromosome 15, clone RP11-356B18, complete sequence
          Length = 205925

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    gttgccaggggaggggggaa 109
             ||||||||||||||||||||
Sbjct: 77978 gttgccaggggaggggggaa 77959
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>gb|AC107990.5| Homo sapiens chromosome 18, clone RP11-103A19, complete sequence
          Length = 166109

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    tgatttctccagtaatttta 147
              ||||||||||||||||||||
Sbjct: 159458 tgatttctccagtaatttta 159439
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>gb|AC098847.4| Homo sapiens chromosome 18, clone RP11-824M15, complete sequence
          Length = 206693

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    tgatttctccagtaatttta 147
              ||||||||||||||||||||
Sbjct: 132506 tgatttctccagtaatttta 132525
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>emb|BX248080.21| Zebrafish DNA sequence from clone CH211-226C1 in linkage group 5,
             complete sequence
          Length = 188075

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    tcactaaaacacaagtattttaca 48
             |||||||||||||||| |||||||
Sbjct: 11304 tcactaaaacacaagtcttttaca 11327
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>gb|AC160407.6| Mus musculus 10 BAC RP24-445P5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 186970

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    attgacatttggaatggaca 255
              ||||||||||||||||||||
Sbjct: 157644 attgacatttggaatggaca 157663
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>gb|BT023453.1| Arabidopsis thaliana At5g43620 gene, complete cds
          Length = 1307

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                        
Query: 316  actgcacctttgtacatccactcttcagtttcatcgctgtagaaatcctcaaatggctct 375
            |||||| ||||||||||||| || |||| ||||| |||  |||| || ||||| ||||||
Sbjct: 1164 actgcatctttgtacatccagtcatcagcttcatggctaaagaactcttcaaacggctct 1105
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>gb|AC090181.9| Homo sapiens chromosome 15, clone RP11-797A18, complete sequence
          Length = 157793

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 311    tgtaaactgcacctttgtac 330
              ||||||||||||||||||||
Sbjct: 122668 tgtaaactgcacctttgtac 122649
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>emb|AL954845.21| Zebrafish DNA sequence from clone DKEY-30H3, complete sequence
          Length = 226343

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      gcaagttactcatgctccat 25
              ||||||||||||||||||||
Sbjct: 167683 gcaagttactcatgctccat 167702
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>gb|AC021049.12| Homo sapiens 12 BAC RP11-904M10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 175315

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     tacaattttacactactatt 64
              ||||||||||||||||||||
Sbjct: 113945 tacaattttacactactatt 113964
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>emb|BX649622.7| Zebrafish DNA sequence from clone CH211-128B10 in linkage group 18,
              complete sequence
          Length = 180248

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     attaacattctattcaaact 89
              ||||||||||||||||||||
Sbjct: 144542 attaacattctattcaaact 144523
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>dbj|AK175583.1| Arabidopsis thaliana mRNA for S-locus protein 4-like, complete cds,
            clone: RAFL22-03-C16
          Length = 1493

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                        
Query: 316  actgcacctttgtacatccactcttcagtttcatcgctgtagaaatcctcaaatggctct 375
            |||||| ||||||||||||| || |||| ||||| |||  |||| || ||||| ||||||
Sbjct: 1233 actgcatctttgtacatccagtcatcagcttcatggctaaagaactcttcaaacggctct 1174
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>gb|AC108814.22| Mus musculus chromosome 19, clone RP23-235H21, complete sequence
          Length = 196556

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 91   ttgccaggggaggggggaaactaa 114
            ||||||||||||||||||| ||||
Sbjct: 3503 ttgccaggggaggggggaatctaa 3526
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>dbj|AB016875.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9D7
          Length = 60476

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                         
Query: 316   actgcacctttgtacatccactcttcagtttcatcgctgtagaaatcctcaaatggctct 375
             |||||| ||||||||||||| || |||| ||||| |||  |||| || ||||| ||||||
Sbjct: 47660 actgcatctttgtacatccagtcatcagcttcatggctaaagaactcttcaaacggctct 47601
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>gb|U83833.1|GGU83833 Gallus gallus T-cell receptor alpha chain gene, partial cds, and
             defender against death protein 1 (DAD1) gene, complete cds
          Length = 31793

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   tctccagtaattttacatgt 152
             ||||||||||||||||||||
Sbjct: 25592 tctccagtaattttacatgt 25573
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>emb|AL928901.8| Zebrafish DNA sequence from clone CH211-155M12 in linkage group 5,
             complete sequence
          Length = 145957

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    tcactaaaacacaagtattttaca 48
             |||||||||||||||| |||||||
Sbjct: 56357 tcactaaaacacaagtcttttaca 56380


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,524,008
Number of Sequences: 3902068
Number of extensions: 4524008
Number of successful extensions: 91042
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90925
Number of HSP's gapped (non-prelim): 113
length of query: 418
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 396
effective length of database: 17,147,199,772
effective search space: 6790291109712
effective search space used: 6790291109712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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