ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SODM_NEUCR (Q9Y783) Superoxide dismutase [Mn], mitochondrial pre... 30 2.0
2BIR1_YEAST (P47134) Protein BIR1 28 4.6
3YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region 28 6.0
4BTBDA_PONPY (Q5R585) BTB/POZ domain-containing protein 10 28 7.8
5BTBDA_MOUSE (Q80X66) BTB/POZ domain-containing protein 10 28 7.8
6BTBDA_HUMAN (Q9BSF8) BTB/POZ domain-containing protein 10 28 7.8

>SODM_NEUCR (Q9Y783) Superoxide dismutase [Mn], mitochondrial precursor (EC|
           1.15.1.1)
          Length = 245

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 101 HSQSHHTRIDHRNNLRKPRSKTIKGKLVPSDILITTQLKFQGAG 232
           HS+ H T + + NN  K     I    +P+ I     +KF G G
Sbjct: 59  HSKHHQTYVTNLNNALKVHVAAIASSDIPAQIAQQPAIKFNGGG 102



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>BIR1_YEAST (P47134) Protein BIR1|
          Length = 954

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 134 RNNLRKPRSKTIKGKLVPSD 193
           R NL++PRS +I GK+VP++
Sbjct: 630 RKNLQEPRSLSISGKVVPTE 649



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>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region|
          Length = 153

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 85  TFVPHTQPITPHPHRSP 135
           T  PH  P TPHPH +P
Sbjct: 42  TPTPHPHPHTPHPHTTP 58



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>BTBDA_PONPY (Q5R585) BTB/POZ domain-containing protein 10|
          Length = 475

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = -3

Query: 285 PKDEAE-ALRAALGSTLLHPAP*NFSWVVIRISDGTSLPLIVFERGFLRLFR*SMRVWCD 109
           P ++ E  +   +GST+       +   +IR  DG S+P               +R  CD
Sbjct: 208 PNEKGEYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIP--------------ELREACD 253

Query: 108 WLCVRYERKMLPNKLLQ*LMKNVLYPG 28
           +LC+ +E   +  + L  LM  +   G
Sbjct: 254 YLCISFEYSTIKCRDLSALMHELSNDG 280



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>BTBDA_MOUSE (Q80X66) BTB/POZ domain-containing protein 10|
          Length = 475

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = -3

Query: 285 PKDEAE-ALRAALGSTLLHPAP*NFSWVVIRISDGTSLPLIVFERGFLRLFR*SMRVWCD 109
           P ++ E  +   +GST+       +   +IR  DG S+P               +R  CD
Sbjct: 208 PNEKGEYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIP--------------ELREACD 253

Query: 108 WLCVRYERKMLPNKLLQ*LMKNVLYPG 28
           +LC+ +E   +  + L  LM  +   G
Sbjct: 254 YLCISFEYSTIKCRDLSALMHELSNDG 280



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>BTBDA_HUMAN (Q9BSF8) BTB/POZ domain-containing protein 10|
          Length = 475

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = -3

Query: 285 PKDEAE-ALRAALGSTLLHPAP*NFSWVVIRISDGTSLPLIVFERGFLRLFR*SMRVWCD 109
           P ++ E  +   +GST+       +   +IR  DG S+P               +R  CD
Sbjct: 208 PNEKGEYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIP--------------ELREACD 253

Query: 108 WLCVRYERKMLPNKLLQ*LMKNVLYPG 28
           +LC+ +E   +  + L  LM  +   G
Sbjct: 254 YLCISFEYSTIKCRDLSALMHELSNDG 280


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,612,173
Number of Sequences: 219361
Number of extensions: 696530
Number of successful extensions: 2022
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2022
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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