Clone Name | rbastl09c06 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SODM_NEUCR (Q9Y783) Superoxide dismutase [Mn], mitochondrial pre... | 30 | 2.0 | 2 | BIR1_YEAST (P47134) Protein BIR1 | 28 | 4.6 | 3 | YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region | 28 | 6.0 | 4 | BTBDA_PONPY (Q5R585) BTB/POZ domain-containing protein 10 | 28 | 7.8 | 5 | BTBDA_MOUSE (Q80X66) BTB/POZ domain-containing protein 10 | 28 | 7.8 | 6 | BTBDA_HUMAN (Q9BSF8) BTB/POZ domain-containing protein 10 | 28 | 7.8 |
---|
>SODM_NEUCR (Q9Y783) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 245 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = +2 Query: 101 HSQSHHTRIDHRNNLRKPRSKTIKGKLVPSDILITTQLKFQGAG 232 HS+ H T + + NN K I +P+ I +KF G G Sbjct: 59 HSKHHQTYVTNLNNALKVHVAAIASSDIPAQIAQQPAIKFNGGG 102
>BIR1_YEAST (P47134) Protein BIR1| Length = 954 Score = 28.5 bits (62), Expect = 4.6 Identities = 11/20 (55%), Positives = 17/20 (85%) Frame = +2 Query: 134 RNNLRKPRSKTIKGKLVPSD 193 R NL++PRS +I GK+VP++ Sbjct: 630 RKNLQEPRSLSISGKVVPTE 649
>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region| Length = 153 Score = 28.1 bits (61), Expect = 6.0 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = +1 Query: 85 TFVPHTQPITPHPHRSP 135 T PH P TPHPH +P Sbjct: 42 TPTPHPHPHTPHPHTTP 58
>BTBDA_PONPY (Q5R585) BTB/POZ domain-containing protein 10| Length = 475 Score = 27.7 bits (60), Expect = 7.8 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Frame = -3 Query: 285 PKDEAE-ALRAALGSTLLHPAP*NFSWVVIRISDGTSLPLIVFERGFLRLFR*SMRVWCD 109 P ++ E + +GST+ + +IR DG S+P +R CD Sbjct: 208 PNEKGEYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIP--------------ELREACD 253 Query: 108 WLCVRYERKMLPNKLLQ*LMKNVLYPG 28 +LC+ +E + + L LM + G Sbjct: 254 YLCISFEYSTIKCRDLSALMHELSNDG 280
>BTBDA_MOUSE (Q80X66) BTB/POZ domain-containing protein 10| Length = 475 Score = 27.7 bits (60), Expect = 7.8 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Frame = -3 Query: 285 PKDEAE-ALRAALGSTLLHPAP*NFSWVVIRISDGTSLPLIVFERGFLRLFR*SMRVWCD 109 P ++ E + +GST+ + +IR DG S+P +R CD Sbjct: 208 PNEKGEYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIP--------------ELREACD 253 Query: 108 WLCVRYERKMLPNKLLQ*LMKNVLYPG 28 +LC+ +E + + L LM + G Sbjct: 254 YLCISFEYSTIKCRDLSALMHELSNDG 280
>BTBDA_HUMAN (Q9BSF8) BTB/POZ domain-containing protein 10| Length = 475 Score = 27.7 bits (60), Expect = 7.8 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Frame = -3 Query: 285 PKDEAE-ALRAALGSTLLHPAP*NFSWVVIRISDGTSLPLIVFERGFLRLFR*SMRVWCD 109 P ++ E + +GST+ + +IR DG S+P +R CD Sbjct: 208 PNEKGEYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIP--------------ELREACD 253 Query: 108 WLCVRYERKMLPNKLLQ*LMKNVLYPG 28 +LC+ +E + + L LM + G Sbjct: 254 YLCISFEYSTIKCRDLSALMHELSNDG 280 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,612,173 Number of Sequences: 219361 Number of extensions: 696530 Number of successful extensions: 2022 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1968 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2022 length of database: 80,573,946 effective HSP length: 73 effective length of database: 64,560,593 effective search space used: 1549454232 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)