Clone Name | rbastl09c02 |
---|---|
Clone Library Name | barley_pub |
>gb|AF118226.1|AF118226 Hordeum vulgare high pI alpha-glucosidase (AGL97) gene, complete cds Length = 7113 Score = 642 bits (324), Expect = 0.0 Identities = 324/324 (100%) Strand = Plus / Minus Query: 78 ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7113 ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 7054 Query: 138 gatgtgagcgacgccgccgagtcctcctgcgttctggtaccgtgtgccggctgacgagct 197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7053 gatgtgagcgacgccgccgagtcctcctgcgttctggtaccgtgtgccggctgacgagct 6994 Query: 198 cgcctccacctccgcgctgttgacgtggacggtgagcttcttcggcgccgccggcgaccg 257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6993 cgcctccacctccgcgctgttgacgtggacggtgagcttcttcggcgccgccggcgaccg 6934 Query: 258 gtgccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtg 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6933 gtgccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtg 6874 Query: 318 caccacctccgacttcaccttgatggccccgtcgctccccatctcgcagctgaaccttac 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6873 caccacctccgacttcaccttgatggccccgtcgctccccatctcgcagctgaaccttac 6814 Query: 378 catgctccaatcgcttctcccgcc 401 |||||||||||||||||||||||| Sbjct: 6813 catgctccaatcgcttctcccgcc 6790
>gb|U22450.1|HVU22450 Hordeum vulgare alpha-glucosidase mRNA, complete cds Length = 2738 Score = 626 bits (316), Expect = e-176 Identities = 329/332 (99%), Gaps = 1/332 (0%) Strand = Plus / Minus Query: 16 ggctttaatttctcgcctttattcaatcaatgttatggtccatatcacaaattgcctaaa 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2736 ggctttaatttctcgcctttattcaatcaatgttatggtccatatcacaaattgcctaaa 2677 Query: 76 ttttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccg 135 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2676 ttt-aataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagaccg 2618 Query: 136 ccgatgtgagcgacgccgccgagtcctcctgcgttctggtaccgtgtgccggctgacgag 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2617 ccgatgtgagcgacgccgccgagtcctcctgcgttctggtaccgtgtgccggctgacgag 2558 Query: 196 ctcgcctccacctccgcgctgttgacgtggacggtgagcttcttcggcgccgccggcgac 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2557 ctcgcctccacctccgcgctgttgacgtggacggtgagcttcttcggcgccgccggcgac 2498 Query: 256 cggtgccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttg 315 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 2497 cggtgccccatgagcaccaccttgcttatgaccagtgtcctgctctgtgcgtacgagttg 2438 Query: 316 tgcaccacctccgacttcaccttgatggcccc 347 |||||||||||||||||||||||||||||||| Sbjct: 2437 tgcaccacctccgacttcaccttgatggcccc 2406 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 368 tgaaccttaccatgctccaatcgcttctcc 397 |||||||||||||||||||||||||||||| Sbjct: 2382 tgaaccttaccatgctccaatcgcttctcc 2353
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 77.8 bits (39), Expect = 2e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 78 ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 137 |||||||| ||| ||||||| || |||||||||| |||||||||||||||||||||||| Sbjct: 27722124 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 27722065 Query: 138 gatgtgagcgacgcc 152 || ||| || ||||| Sbjct: 27722064 gacgtgcgccacgcc 27722050 Score = 69.9 bits (35), Expect = 6e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 78 ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 137 |||||||| ||| ||||||| || |||||||||| |||||||||||||| |||||||| Sbjct: 27661916 ttaataggtcatcacgaccttgagatcgaactcctgcccgacgaccagcgtcagcccgct 27661975 Query: 138 gatgtgagcgacgcc 152 || ||| |||||||| Sbjct: 27661976 gacgtgcgcgacgcc 27661990 Score = 61.9 bits (31), Expect = 1e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 241 ggcgccgccggcgaccggtgccccatgagcaccaccttgcttatcaccagtgtcctgctc 300 |||| ||||| ||||||| ||||||||||||||||||||| || ||| |||| |||| Sbjct: 27662082 ggcggcgccgccgaccggagccccatgagcaccaccttgccgatggccatcgtccggctc 27662141 Query: 301 tgtgcgtacgagttgtgcaccac 323 | |||||||||| ||||||||| Sbjct: 27662142 ggcgcgtacgagtcgtgcaccac 27662164 Score = 48.1 bits (24), Expect = 0.022 Identities = 54/64 (84%) Strand = Plus / Minus Query: 260 gccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtgca 319 |||||||||||||||||||| || |||| |||| |||| | |||||||||| ||||| Sbjct: 27721936 gccccatgagcaccaccttggcgatgaccatcgtccggctcggcgcgtacgagtcgtgca 27721877 Query: 320 ccac 323 |||| Sbjct: 27721876 ccac 27721873 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 acgagctcgcctccacctcc 210 |||||||||||||||||||| Sbjct: 6990902 acgagctcgcctccacctcc 6990921
>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1153E06 Length = 174588 Score = 77.8 bits (39), Expect = 2e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 78 ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 137 |||||||| ||| ||||||| || |||||||||| |||||||||||||||||||||||| Sbjct: 71379 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 71320 Query: 138 gatgtgagcgacgcc 152 || ||| || ||||| Sbjct: 71319 gacgtgcgccacgcc 71305 Score = 69.9 bits (35), Expect = 6e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 78 ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 137 |||||||| ||| ||||||| || |||||||||| |||||||||||||| |||||||| Sbjct: 11171 ttaataggtcatcacgaccttgagatcgaactcctgcccgacgaccagcgtcagcccgct 11230 Query: 138 gatgtgagcgacgcc 152 || ||| |||||||| Sbjct: 11231 gacgtgcgcgacgcc 11245 Score = 61.9 bits (31), Expect = 1e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 241 ggcgccgccggcgaccggtgccccatgagcaccaccttgcttatcaccagtgtcctgctc 300 |||| ||||| ||||||| ||||||||||||||||||||| || ||| |||| |||| Sbjct: 11337 ggcggcgccgccgaccggagccccatgagcaccaccttgccgatggccatcgtccggctc 11396 Query: 301 tgtgcgtacgagttgtgcaccac 323 | |||||||||| ||||||||| Sbjct: 11397 ggcgcgtacgagtcgtgcaccac 11419 Score = 48.1 bits (24), Expect = 0.022 Identities = 54/64 (84%) Strand = Plus / Minus Query: 260 gccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtgca 319 |||||||||||||||||||| || |||| |||| |||| | |||||||||| ||||| Sbjct: 71191 gccccatgagcaccaccttggcgatgaccatcgtccggctcggcgcgtacgagtcgtgca 71132 Query: 320 ccac 323 |||| Sbjct: 71131 ccac 71128
>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0710B08 Length = 186991 Score = 77.8 bits (39), Expect = 2e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 78 ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 137 |||||||| ||| ||||||| || |||||||||| |||||||||||||||||||||||| Sbjct: 24633 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 24574 Query: 138 gatgtgagcgacgcc 152 || ||| || ||||| Sbjct: 24573 gacgtgcgccacgcc 24559 Score = 48.1 bits (24), Expect = 0.022 Identities = 54/64 (84%) Strand = Plus / Minus Query: 260 gccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtgca 319 |||||||||||||||||||| || |||| |||| |||| | |||||||||| ||||| Sbjct: 24445 gccccatgagcaccaccttggcgatgaccatcgtccggctcggcgcgtacgagtcgtgca 24386 Query: 320 ccac 323 |||| Sbjct: 24385 ccac 24382
>dbj|AK121588.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037N10, full insert sequence Length = 2804 Score = 77.8 bits (39), Expect = 2e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 78 ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 137 |||||||| ||| ||||||| || |||||||||| |||||||||||||||||||||||| Sbjct: 2720 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 2661 Query: 138 gatgtgagcgacgcc 152 || ||| || ||||| Sbjct: 2660 gacgtgcgccacgcc 2646 Score = 48.1 bits (24), Expect = 0.022 Identities = 54/64 (84%) Strand = Plus / Minus Query: 260 gccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtgca 319 |||||||||||||||||||| || |||| |||| |||| | |||||||||| ||||| Sbjct: 2532 gccccatgagcaccaccttggcgatgaccatcgtccggctcggcgcgtacgagtcgtgca 2473 Query: 320 ccac 323 |||| Sbjct: 2472 ccac 2469
>dbj|AK105449.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B12, full insert sequence Length = 2873 Score = 77.8 bits (39), Expect = 2e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 78 ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 137 |||||||| ||| ||||||| || |||||||||| |||||||||||||||||||||||| Sbjct: 2788 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 2729 Query: 138 gatgtgagcgacgcc 152 || ||| || ||||| Sbjct: 2728 gacgtgcgccacgcc 2714 Score = 48.1 bits (24), Expect = 0.022 Identities = 54/64 (84%) Strand = Plus / Minus Query: 260 gccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtgca 319 |||||||||||||||||||| || |||| |||| |||| | |||||||||| ||||| Sbjct: 2600 gccccatgagcaccaccttggcgatgaccatcgtccggctcggcgcgtacgagtcgtgca 2541 Query: 320 ccac 323 |||| Sbjct: 2540 ccac 2537
>dbj|AK119824.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-D07, full insert sequence Length = 2829 Score = 69.9 bits (35), Expect = 6e-09 Identities = 65/75 (86%) Strand = Plus / Minus Query: 78 ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 137 |||||||| ||| ||||||| || |||||||||| |||||||||||||| |||||||| Sbjct: 2739 ttaataggtcatcacgaccttgagatcgaactcctgcccgacgaccagcgtcagcccgct 2680 Query: 138 gatgtgagcgacgcc 152 || ||| |||||||| Sbjct: 2679 gacgtgcgcgacgcc 2665 Score = 61.9 bits (31), Expect = 1e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 241 ggcgccgccggcgaccggtgccccatgagcaccaccttgcttatcaccagtgtcctgctc 300 |||| ||||| ||||||| ||||||||||||||||||||| || ||| |||| |||| Sbjct: 2573 ggcggcgccgccgaccggagccccatgagcaccaccttgccgatggccatcgtccggctc 2514 Query: 301 tgtgcgtacgagttgtgcaccac 323 | |||||||||| ||||||||| Sbjct: 2513 ggcgcgtacgagtcgtgcaccac 2491
>gb|AE004504.1| Pseudomonas aeruginosa PAO1, section 65 of 529 of the complete genome Length = 15542 Score = 46.1 bits (23), Expect = 0.087 Identities = 23/23 (100%) Strand = Plus / Minus Query: 240 cggcgccgccggcgaccggtgcc 262 ||||||||||||||||||||||| Sbjct: 9351 cggcgccgccggcgaccggtgcc 9329
>dbj|AP006653.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT05M24, TM0338, complete sequence Length = 94745 Score = 46.1 bits (23), Expect = 0.087 Identities = 23/23 (100%) Strand = Plus / Plus Query: 316 tgcaccacctccgacttcacctt 338 ||||||||||||||||||||||| Sbjct: 19055 tgcaccacctccgacttcacctt 19077
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 206 cctccgcgctgttgacgtggacggtg 231 |||||||||||||| ||||||||||| Sbjct: 76865 cctccgcgctgttggcgtggacggtg 76840
>gb|AC121882.3| Mus musculus BAC clone RP24-135M19 from chromosome 1, complete sequence Length = 173376 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 tcaccagtgtcctgctctgtg 304 ||||||||||||||||||||| Sbjct: 124572 tcaccagtgtcctgctctgtg 124552
>ref|XM_464692.1| Oryza sativa (japonica cultivar-group), mRNA Length = 990 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 240 cggcgccgccggcgaccggtgccccatg 267 |||||||||||| |||||| |||||||| Sbjct: 489 cggcgccgccggggaccggggccccatg 462
>ref|XM_464691.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2595 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 240 cggcgccgccggcgaccggtgccccatg 267 |||||||||||| |||||| |||||||| Sbjct: 384 cggcgccgccggggaccggggccccatg 411
>ref|NM_193402.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2886 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 cgcctccacctccgcgctgt 217 |||||||||||||||||||| Sbjct: 1584 cgcctccacctccgcgctgt 1565
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 ttcttcggcgccgccggcga 254 |||||||||||||||||||| Sbjct: 482150 ttcttcggcgccgccggcga 482169
>gb|AF003739.2| Caenorhabditis elegans cosmid M01D7, complete sequence Length = 41179 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 acaaattgcctaaattttaa 81 |||||||||||||||||||| Sbjct: 23822 acaaattgcctaaattttaa 23841
>gb|AC121148.8| Mus musculus chromosome 3, clone RP24-369K4, complete sequence Length = 209365 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 caaattgcctaaattttaat 82 |||||||||||||||||||| Sbjct: 125400 caaattgcctaaattttaat 125381
>gb|AC108872.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0079P23, complete sequence Length = 125090 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cgccgccggcgaccggtgcc 262 |||||||||||||||||||| Sbjct: 37939 cgccgccggcgaccggtgcc 37920
>gb|AC183830.2| Pan troglodytes BAC clone CH251-267I9 from chromosome 7, complete sequence Length = 157720 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 gacttcaccttgatggcccc 347 |||||||||||||||||||| Sbjct: 30477 gacttcaccttgatggcccc 30458
>gb|AC137751.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0014E11, complete sequence Length = 199348 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cgccgccggcgaccggtgcc 262 |||||||||||||||||||| Sbjct: 186156 cgccgccggcgaccggtgcc 186137
>gb|AC087778.3| Pan troglodytes clone RP43-176J10, complete sequence Length = 63176 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 gacttcaccttgatggcccc 347 |||||||||||||||||||| Sbjct: 29544 gacttcaccttgatggcccc 29563
>gb|AE012485.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 393 of 460 of the complete genome Length = 12189 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ccagcgacagcccgccgatg 141 |||||||||||||||||||| Sbjct: 1836 ccagcgacagcccgccgatg 1855
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ccagcgacagcccgccgatg 141 |||||||||||||||||||| Sbjct: 4397098 ccagcgacagcccgccgatg 4397117
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cgccgccggcgaccggtgcc 262 |||||||||||||||||||| Sbjct: 25099475 cgccgccggcgaccggtgcc 25099456 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cgccgccggcgaccggtgcc 262 |||||||||||||||||||| Sbjct: 25057108 cgccgccggcgaccggtgcc 25057089
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 240 cggcgccgccggcgaccggtgccccatg 267 |||||||||||| |||||| |||||||| Sbjct: 6731971 cggcgccgccggggaccggggccccatg 6731944
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 cgcctccacctccgcgctgt 217 |||||||||||||||||||| Sbjct: 20626197 cgcctccacctccgcgctgt 20626178
>dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24 Length = 172642 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 cgcctccacctccgcgctgt 217 |||||||||||||||||||| Sbjct: 88173 cgcctccacctccgcgctgt 88154
>dbj|AP004225.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1156H12 Length = 159509 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 cgcctccacctccgcgctgt 217 |||||||||||||||||||| Sbjct: 150019 cgcctccacctccgcgctgt 150000
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 cgatgtgagcgacgccgccg 156 |||||||||||||||||||| Sbjct: 6175848 cgatgtgagcgacgccgccg 6175867
>dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete genome Length = 351911 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 gcgccgccggcgaccggtgc 261 |||||||||||||||||||| Sbjct: 240810 gcgccgccggcgaccggtgc 240829
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 cggcgccgccggcgaccggt 259 |||||||||||||||||||| Sbjct: 2763090 cggcgccgccggcgaccggt 2763071
>dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0080E19 Length = 152755 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 acgagctcgcctccacctcc 210 |||||||||||||||||||| Sbjct: 11689 acgagctcgcctccacctcc 11708
>dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0061B07 Length = 124766 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 acgagctcgcctccacctcc 210 |||||||||||||||||||| Sbjct: 50329 acgagctcgcctccacctcc 50348
>gb|AY830105.1| Phytophthora infestans gypsy-like retrotransposon GypsyPi-3b, complete sequence Length = 7348 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 acgaccagcgacagcccgccgatg 141 ||||||||||| |||||||||||| Sbjct: 2393 acgaccagcgatagcccgccgatg 2416
>gb|AY830104.1| Phytophthora infestans gypsy-like retrotransposon GypsyPi-3a, complete sequence Length = 8977 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 acgaccagcgacagcccgccgatg 141 ||||||||||| |||||||||||| Sbjct: 3118 acgaccagcgatagcccgccgatg 3141
>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1131G07 Length = 133992 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 240 cggcgccgccggcgaccggtgccccatg 267 |||||||||||| |||||| |||||||| Sbjct: 53024 cggcgccgccggggaccggggccccatg 52997
>dbj|AK120193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035P19, full insert sequence Length = 2499 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 acgagctcgcctccacctcc 210 |||||||||||||||||||| Sbjct: 52 acgagctcgcctccacctcc 71
>dbj|AK111379.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-B05, full insert sequence Length = 990 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 240 cggcgccgccggcgaccggtgccccatg 267 |||||||||||| |||||| |||||||| Sbjct: 489 cggcgccgccggggaccggggccccatg 462
>gb|AC005074.1|AC005074 Homo sapiens BAC clone CTA-208H19 from 7q11.23, complete sequence Length = 50604 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 gacttcaccttgatggcccc 347 |||||||||||||||||||| Sbjct: 39322 gacttcaccttgatggcccc 39303
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 233 gcttcttcggcgccgccggcgacc 256 ||||||||| |||||||||||||| Sbjct: 523964 gcttcttcgccgccgccggcgacc 523987
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cgccgccggcgaccggtgcc 262 |||||||||||||||||||| Sbjct: 25410494 cgccgccggcgaccggtgcc 25410475 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cgccgccggcgaccggtgcc 262 |||||||||||||||||||| Sbjct: 25368698 cgccgccggcgaccggtgcc 25368679 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,172,929 Number of Sequences: 3902068 Number of extensions: 3172929 Number of successful extensions: 59258 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58516 Number of HSP's gapped (non-prelim): 741 length of query: 401 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 379 effective length of database: 17,147,199,772 effective search space: 6498788713588 effective search space used: 6498788713588 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)