ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome... 248 1e-62
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 248 1e-62
3dbj|AK104782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 1e-62
4dbj|AK065508.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 1e-62
5dbj|AK059736.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 1e-62
6dbj|AB037144.1| Oryza sativa (japonica cultivar-group) OsUV-DDB ... 248 1e-62
7ref|XM_476019.1| Oryza sativa (japonica cultivar-group), predic... 244 2e-61
8gb|BT024148.1| Zea mays clone EL01N0440D08 mRNA sequence 200 3e-48
9gb|AY104362.1| Zea mays PCO060159 mRNA sequence 109 7e-21
10ref|XM_785030.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 42 1.4
11ref|NM_118228.2| Arabidopsis thaliana DDB1B (DAMAGED DNA BINDING... 40 5.7
12ref|XM_482858.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.7
13ref|NM_021099.2| Mus musculus kit oncogene (Kit), mRNA 40 5.7
14ref|XM_956852.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.7
15ref|XM_326439.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.7
16gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 5.7
17ref|XM_547518.2| PREDICTED: Canis familiaris similar to Apoptosi... 40 5.7
18gb|AC099575.10| Mus musculus chromosome 14, clone RP23-83E2, com... 40 5.7
19gb|AC110157.7| Mus musculus chromosome 14, clone RP23-151K23, co... 40 5.7
20emb|X65998.1|MMCKITPRO M.musculus genomic DNA of c-kit promoter ... 40 5.7
21gb|AC129091.19| Medicago truncatula clone mth2-15j7, complete se... 40 5.7
22emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on ch... 40 5.7
23emb|Y00864.1|MMCKIT Mouse c-kit mRNA 40 5.7
24emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, ... 40 5.7
25emb|AL021960.2|ATF7J7 Arabidopsis thaliana DNA chromosome 4, BAC... 40 5.7
26gb|AF356350.1|AF356350 Mus musculus c-KIT gene, promoter region ... 40 5.7
27dbj|AK220648.1| Arabidopsis thaliana mRNA for UV-damaged DNA-bin... 40 5.7
28gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-3... 40 5.7
29dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
30dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 5.7
31dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
32emb|AL731729.10| Mouse DNA sequence from clone RP23-92L12 on chr... 40 5.7
33dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
34gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.7
35gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 5.7
36dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0... 40 5.7 
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08,
             complete sequence
          Length = 142196

 Score =  248 bits (125), Expect = 1e-62
 Identities = 212/241 (87%)
 Strand = Plus / Minus

                                                                         
Query: 185   acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 244
             |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 77982 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 77923

                                                                         
Query: 245   atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 304
             ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 77922 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 77863

                                                                         
Query: 305   tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 364
             || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 77862 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 77803

                                                                         
Query: 365   tgctcgtggctcaggctgcccacgcccttgatgaacttgaccagggttgcctggagcttc 424
             ||||| ||||||||| | ||||||||||| |||||||| ||||| || | ||||||||||
Sbjct: 77802 tgctcatggctcaggttccccacgccctttatgaacttcaccagagtcgactggagcttc 77743

              
Query: 425   t 425
             |
Sbjct: 77742 t 77742
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  248 bits (125), Expect = 1e-62
 Identities = 212/241 (87%)
 Strand = Plus / Minus

                                                                            
Query: 185      acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 244
                |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 29299325 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 29299266

                                                                            
Query: 245      atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 304
                ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 29299265 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 29299206

                                                                            
Query: 305      tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 364
                || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 29299205 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 29299146

                                                                            
Query: 365      tgctcgtggctcaggctgcccacgcccttgatgaacttgaccagggttgcctggagcttc 424
                ||||| ||||||||| | ||||||||||| |||||||| ||||| || | ||||||||||
Sbjct: 29299145 tgctcatggctcaggttccccacgccctttatgaacttcaccagagtcgactggagcttc 29299086

                 
Query: 425      t 425
                |
Sbjct: 29299085 t 29299085
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>dbj|AK104782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C09, full
           insert sequence
          Length = 1135

 Score =  248 bits (125), Expect = 1e-62
 Identities = 212/241 (87%)
 Strand = Plus / Minus

                                                                       
Query: 185 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 244
           |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 734 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 675

                                                                       
Query: 245 atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 304
           ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 674 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 615

                                                                       
Query: 305 tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 364
           || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 614 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 555

                                                                       
Query: 365 tgctcgtggctcaggctgcccacgcccttgatgaacttgaccagggttgcctggagcttc 424
           ||||| ||||||||| | ||||||||||| |||||||| ||||| || | ||||||||||
Sbjct: 554 tgctcatggctcaggttccccacgccctttatgaacttcaccagagtcgactggagcttc 495

            
Query: 425 t 425
           |
Sbjct: 494 t 494
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>dbj|AK065508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026I01, full
            insert sequence
          Length = 3792

 Score =  248 bits (125), Expect = 1e-62
 Identities = 212/241 (87%)
 Strand = Plus / Minus

                                                                        
Query: 185  acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 244
            |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 3391 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 3332

                                                                        
Query: 245  atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 304
            ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 3331 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 3272

                                                                        
Query: 305  tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 364
            || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 3271 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 3212

                                                                        
Query: 365  tgctcgtggctcaggctgcccacgcccttgatgaacttgaccagggttgcctggagcttc 424
            ||||| ||||||||| | ||||||||||| |||||||| ||||| || | ||||||||||
Sbjct: 3211 tgctcatggctcaggttccccacgccctttatgaacttcaccagagtcgactggagcttc 3152

             
Query: 425  t 425
            |
Sbjct: 3151 t 3151
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>dbj|AK059736.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-D04, full
           insert sequence
          Length = 1135

 Score =  248 bits (125), Expect = 1e-62
 Identities = 212/241 (87%)
 Strand = Plus / Minus

                                                                       
Query: 185 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 244
           |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 734 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 675

                                                                       
Query: 245 atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 304
           ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 674 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 615

                                                                       
Query: 305 tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 364
           || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 614 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 555

                                                                       
Query: 365 tgctcgtggctcaggctgcccacgcccttgatgaacttgaccagggttgcctggagcttc 424
           ||||| ||||||||| | ||||||||||| |||||||| ||||| || | ||||||||||
Sbjct: 554 tgctcatggctcaggttccccacgccctttatgaacttcaccagagtcgactggagcttc 495

            
Query: 425 t 425
           |
Sbjct: 494 t 494
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>dbj|AB037144.1| Oryza sativa (japonica cultivar-group) OsUV-DDB mRNA for UV-damaged
            DNA binding protein, complete cds
          Length = 3658

 Score =  248 bits (125), Expect = 1e-62
 Identities = 212/241 (87%)
 Strand = Plus / Minus

                                                                        
Query: 185  acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 244
            |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 3391 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 3332

                                                                        
Query: 245  atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 304
            ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 3331 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 3272

                                                                        
Query: 305  tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 364
            || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 3271 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 3212

                                                                        
Query: 365  tgctcgtggctcaggctgcccacgcccttgatgaacttgaccagggttgcctggagcttc 424
            ||||| ||||||||| | ||||||||||| |||||||| ||||| || | ||||||||||
Sbjct: 3211 tgctcatggctcaggttccccacgccctttatgaacttcaccagagtcgactggagcttc 3152

             
Query: 425  t 425
            |
Sbjct: 3151 t 3151
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>ref|XM_476019.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3273

 Score =  244 bits (123), Expect = 2e-61
 Identities = 210/239 (87%)
 Strand = Plus / Minus

                                                                        
Query: 187  ctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccat 246
            |||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||||
Sbjct: 3273 ctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggacccccat 3214

                                                                        
Query: 247  cgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcaggtc 306
              |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||||
Sbjct: 3213 acccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcaggtc 3154

                                                                        
Query: 307  gccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccactg 366
             || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3153 accatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccattg 3094

                                                                       
Query: 367  ctcgtggctcaggctgcccacgcccttgatgaacttgaccagggttgcctggagcttct 425
            ||| ||||||||| | ||||||||||| |||||||| ||||| || | |||||||||||
Sbjct: 3093 ctcatggctcaggttccccacgccctttatgaacttcaccagagtcgactggagcttct 3035
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>gb|BT024148.1| Zea mays clone EL01N0440D08 mRNA sequence
          Length = 1582

 Score =  200 bits (101), Expect = 3e-48
 Identities = 197/229 (86%)
 Strand = Plus / Plus

                                                                       
Query: 197 ctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccatcgccttggcc 256
           ||||||||||| ||||||| ||||||||||||||| || |||||  |||||||||||| |
Sbjct: 246 ctcgtcagctcttccaccctcttggacagctcctccacggggacgcccatcgccttggac 305

                                                                       
Query: 257 acctcctccatcttggacctgttgaggtcgaggaatgactcaatcaggtcgccgtccagg 316
           |||||||||||||||  || | | ||||| ||||| ||||| |||||||| ||||| |||
Sbjct: 306 acctcctccatcttgctccggctaaggtcaaggaaagactcgatcaggtcaccgtcgagg 365

                                                                       
Query: 317 aagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccactgctcgtggctc 376
           ||||| || ||||||| ||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 366 aagttccgagcctccgccgtcttcttgtcgttatggaaggaccgccattgctcgtggctc 425

                                                            
Query: 377 aggctgcccacgcccttgatgaacttgaccagggttgcctggagcttct 425
           ||| | || |||||||| ||| |||| || ||||| | |||||||||||
Sbjct: 426 aggtttccgacgccctttatgtacttcacaagggtcgactggagcttct 474
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>gb|AY104362.1| Zea mays PCO060159 mRNA sequence
          Length = 1296

 Score =  109 bits (55), Expect = 7e-21
 Identities = 157/191 (82%)
 Strand = Plus / Minus

                                                                       
Query: 187 ctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccat 246
           |||||| || ||||||||||| |||||   ||||||||| ||||| || |  ||  ||||
Sbjct: 860 ctagtgaagcctcgtcagctcttccacaatcttggacagatcctccaccgaaacgcccat 801

                                                                       
Query: 247 cgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcaggtc 306
            ||||||| |||| |||||||||||  || | | ||||| ||||| ||||| ||||||||
Sbjct: 800 agccttggacaccacctccatcttgctccggctaaggtcaaggaacgactcgatcaggtc 741

                                                                       
Query: 307 gccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccactg 366
            || || |||||||| || |||||||  |||||||||||||| |||||||||||||| ||
Sbjct: 740 accatcaaggaagttccgtgcctccgctgtcttcttgtcgttatggaacgaccgccattg 681

                      
Query: 367 ctcgtggctca 377
           ||| |||||||
Sbjct: 680 ctcatggctca 670
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>ref|XM_785030.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC585193 (LOC585193), mRNA
          Length = 1668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 247 cgccttggccacctcctccat 267
           |||||||||||||||||||||
Sbjct: 264 cgccttggccacctcctccat 244
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>ref|NM_118228.2| Arabidopsis thaliana DDB1B (DAMAGED DNA BINDING PROTEIN 1 B)
            AT4G21100 (DDB1B) mRNA, complete cds
          Length = 3390

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 344  tcgttgtggaacgaccgccactgctcgtggct 375
            ||||||| |||||| | |||||||||||||||
Sbjct: 3110 tcgttgttgaacgatctccactgctcgtggct 3079
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>ref|XM_482858.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1599

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 217  cttggacagctcctcgacag 236
            ||||||||||||||||||||
Sbjct: 1413 cttggacagctcctcgacag 1394
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>ref|NM_021099.2| Mus musculus kit oncogene (Kit), mRNA
          Length = 5132

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  cgccatcgccttggccacct 260
            ||||||||||||||||||||
Sbjct: 2365 cgccatcgccttggccacct 2346
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>ref|XM_956852.1| Neurospora crassa OR74A hypothetical protein (NCU06585.1) partial
            mRNA
          Length = 3123

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 249  ccttggccacctcctccatc 268
            ||||||||||||||||||||
Sbjct: 2548 ccttggccacctcctccatc 2529
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>ref|XM_326439.1| Neurospora crassa OR74A hypothetical protein (NCU06585.1) partial
            mRNA
          Length = 3123

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 249  ccttggccacctcctccatc 268
            ||||||||||||||||||||
Sbjct: 2548 ccttggccacctcctccatc 2529
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 244     catcgccttggccacctcctccat 267
               |||||||||||||||||| |||||
Sbjct: 2717222 catcgccttggccacctcttccat 2717245
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>ref|XM_547518.2| PREDICTED: Canis familiaris similar to Apoptosis stimulating of p53
            protein 2 (Tumor suppressor p53-binding protein 2)
            (p53-binding protein 2) (53BP2) (Bcl2-binding protein)
            (Bbp) (LOC490397), mRNA
          Length = 3792

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  gtctcgtcagctcctccacc 214
            ||||||||||||||||||||
Sbjct: 1102 gtctcgtcagctcctccacc 1083
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>gb|AC099575.10| Mus musculus chromosome 14, clone RP23-83E2, complete sequence
          Length = 138102

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   ctcctccatcttggacctgt 278
             ||||||||||||||||||||
Sbjct: 32235 ctcctccatcttggacctgt 32254
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>gb|AC110157.7| Mus musculus chromosome 14, clone RP23-151K23, complete sequence
          Length = 243114

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 259    ctcctccatcttggacctgt 278
              ||||||||||||||||||||
Sbjct: 203840 ctcctccatcttggacctgt 203859
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>emb|X65998.1|MMCKITPRO M.musculus genomic DNA of c-kit promoter region
          Length = 1161

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 241 cgccatcgccttggccacct 260
           ||||||||||||||||||||
Sbjct: 30  cgccatcgccttggccacct 11
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>gb|AC129091.19| Medicago truncatula clone mth2-15j7, complete sequence
          Length = 106540

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    aaagttacactcttatcaaa 63
             ||||||||||||||||||||
Sbjct: 92380 aaagttacactcttatcaaa 92361
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>emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on chromosome 9 Contains a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 5 (SLC25A5) (ANT2)
             pseudogene, complete sequence
          Length = 166664

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 131   tttacaacacagcgaaaacgaacaaata 158
             |||||| ||||| |||||||||||||||
Sbjct: 20150 tttacagcacagtgaaaacgaacaaata 20177
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>emb|Y00864.1|MMCKIT Mouse c-kit mRNA
          Length = 5098

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  cgccatcgccttggccacct 260
            ||||||||||||||||||||
Sbjct: 2365 cgccatcgccttggccacct 2346
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>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54
          Length = 198715

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 344   tcgttgtggaacgaccgccactgctcgtggct 375
             ||||||| |||||| | |||||||||||||||
Sbjct: 70651 tcgttgttgaacgatctccactgctcgtggct 70682
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>emb|AL021960.2|ATF7J7 Arabidopsis thaliana DNA chromosome 4, BAC clone  F7J7 (ESSA project)
          Length = 91387

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 344   tcgttgtggaacgaccgccactgctcgtggct 375
             ||||||| |||||| | |||||||||||||||
Sbjct: 12448 tcgttgttgaacgatctccactgctcgtggct 12479
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>gb|AF356350.1|AF356350 Mus musculus c-KIT gene, promoter region and partial cds
          Length = 1210

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 241 cgccatcgccttggccacct 260
           ||||||||||||||||||||
Sbjct: 75  cgccatcgccttggccacct 56
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>dbj|AK220648.1| Arabidopsis thaliana mRNA for UV-damaged DNA-binding protein-like,
            complete cds, clone: RAFL21-64-B09
          Length = 3586

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 344  tcgttgtggaacgaccgccactgctcgtggct 375
            ||||||| |||||| | |||||||||||||||
Sbjct: 3264 tcgttgttgaacgatctccactgctcgtggct 3233
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>gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-31g23, complete
             sequence
          Length = 113812

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    aaagttacactcttatcaaa 63
             ||||||||||||||||||||
Sbjct: 94991 aaagttacactcttatcaaa 95010
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 217      cttggacagctcctcgacag 236
                ||||||||||||||||||||
Sbjct: 22995444 cttggacagctcctcgacag 22995425
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    cgccttggccacctcctcca 266
              ||||||||||||||||||||
Sbjct: 290449 cgccttggccacctcctcca 290468
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>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0104B02
          Length = 169588

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    cttggacagctcctcgacag 236
              ||||||||||||||||||||
Sbjct: 169282 cttggacagctcctcgacag 169263
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>emb|AL731729.10| Mouse DNA sequence from clone RP23-92L12 on chromosome X, complete
             sequence
          Length = 216656

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    acagataaagttacactctt 57
             ||||||||||||||||||||
Sbjct: 39645 acagataaagttacactctt 39626
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>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0470B03
          Length = 163371

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   cttggacagctcctcgacag 236
             ||||||||||||||||||||
Sbjct: 55172 cttggacagctcctcgacag 55153
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 240     ccgccatcgccttggccacc 259
               ||||||||||||||||||||
Sbjct: 1957900 ccgccatcgccttggccacc 1957919
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 247     cgccttggccacctcctcca 266
               ||||||||||||||||||||
Sbjct: 1595005 cgccttggccacctcctcca 1594986
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>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence
          Length = 124602

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     tcttatcaaagtcgaaaaca 73
              ||||||||||||||||||||
Sbjct: 118575 tcttatcaaagtcgaaaaca 118594


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,354,338
Number of Sequences: 3902068
Number of extensions: 3354338
Number of successful extensions: 63330
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63036
Number of HSP's gapped (non-prelim): 286
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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