>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)|
          Length = 2001

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +3

Query: 42  SYRHSAQHHYPDTRHIAHTHMIPPWTSN*SSTQTEPSIQPSLGMPLVVQ---SLELGVSG 212
           S +H  QHH+P+    A    +PP     SS Q  P+I P  G+        SL L   G
Sbjct: 176 SQQHQQQHHHPNPFVAASAPSLPPPP---SSLQAPPAITPIAGLSAPAPASGSLPLSAGG 232

Query: 213 I 215
           I
Sbjct: 233 I 233

>KN1_MAIZE (P24345) Homeotic protein knotted-1|
          Length = 359

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 18  QHF*TCKHSYRHS-AQHHYPDTRHIAHTHMIPPWTSN*SSTQTE-PSIQPSLGMPLVVQS 191
           QHF     S+ H   QHH+       H H   PW S+ S+     P   PS G+PL + +
Sbjct: 6   QHFGVGASSHGHGHGQHHH-------HHHHHHPWASSLSAVVAPLPPQPPSAGLPLTLNT 58

Query: 192 L 194
           +
Sbjct: 59  V 59

>MTRM_DROYA (P83733) Protein matrimony (Cell cycle arrest protein D52)|
          Length = 219

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 39  HSYRHSAQHHYPDTRHIAHTHMIPP 113
           H + H  QHH+   +HI  T + PP
Sbjct: 79  HPHPHQHQHHHHHHKHIHRTQLKPP 103

>CR023_HUMAN (Q8NB54) Protein C18orf23|
          Length = 160

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 153 CWVPFAYCFSYSSREESCVCGRYALYQDNGVVRCACSCVCTF 28
           C  P  YC ++ +   +C+C   A      +  C C CVC +
Sbjct: 26  CASPLCYCPAHPA-PRNCLCMTVAYTGSRCLGACVCVCVCLY 66

>YRO7_CAEEL (Q09424) Hypothetical protein R07G3.7|
          Length = 366

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 45  YRHSAQHHYPDTRHIAH 95
           Y+HS QHH P  R I+H
Sbjct: 271 YKHSVQHHKPIKRDISH 287

>MUTYH_RAT (Q8R5G2) A/G-specific adenine DNA glycosylase (EC 3.2.2.-) (MutY|
           homolog) (rMYH)
          Length = 516

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 212 DQREQELGTSLVAPQLPL-HFCPCSALLRLH 301
           +Q   ELG ++  PQ PL + CP  +L R H
Sbjct: 250 NQAAMELGATVCTPQRPLCNHCPVQSLCRAH 280

>TMM28_HUMAN (O75949) Transmembrane protein 28 (TED protein)|
          Length = 473

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +3

Query: 30  TCKHSYRHSAQHHYPDTRHIAHTHMIPPWTSN*SSTQTEPSIQPSLG 170
           T +  + HS  HHY    H  H H  PP          +P++ P  G
Sbjct: 382 THQQQFHHSYFHHYHQQYHHYHPHHDPP-----GRVSNKPALLPVSG 423

>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID|
           domain-containing protein 1B) (Osa homolog 2) (hOsa2)
           (p250R) (BRG1-binding protein hELD/OSA1)
           (BRG1-associated factor 250b) (BAF250B)
          Length = 2236

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 36  KHSYRHSAQHHYPDTRHIAHTHMI 107
           +H + H A HH+    H+ H H +
Sbjct: 83  QHHHHHHAHHHHHHAHHLHHHHAL 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,034,394
Number of Sequences: 219361
Number of extensions: 946729
Number of successful extensions: 2701
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2685
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)