>gb|AC114009.4| Mus musculus BAC clone RP23-385K2 from 8, complete sequence
          Length = 202089

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 91     cccacacacacatgattcctc 111
              |||||||||||||||||||||
Sbjct: 143226 cccacacacacatgattcctc 143246

>emb|AL450997.5| Human DNA sequence from clone RP5-1086I18 on chromosome 1 Contains part
             of the KCND3 gene for potassium voltage-gated channel
             Shal-related subfamily member 3 and a novel gene, complete
             sequence
          Length = 126692

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   cccagcatccagccctccctt 167
             |||||||||||||||||||||
Sbjct: 24390 cccagcatccagccctccctt 24370

>emb|AL357129.11| Human DNA sequence from clone RP11-114A21 on chromosome
           Xq21.31-22.1, complete sequence
          Length = 145380

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 254 cagcttcctcttcatttctgc 274
           |||||||||||||||||||||
Sbjct: 752 cagcttcctcttcatttctgc 772

>ref|NM_116226.1| Arabidopsis thaliana nucleotide binding AT4G00090 mRNA, complete
           cds
          Length = 1685

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 tgcatcatctagcttgaaca 355
           ||||||||||||||||||||
Sbjct: 460 tgcatcatctagcttgaaca 441

>ref|XM_361649.1| Magnaporthe grisea 70-15 hypothetical protein (MG04123.4) partial
            mRNA
          Length = 3087

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 286  gctcctccgcctccatgtgccagc 309
            ||||||||||| ||||||||||||
Sbjct: 1715 gctcctccgccgccatgtgccagc 1692

>emb|CR942271.10| Human DNA sequence from clone DAMC-325F20 on chromosome 6, complete
             sequence
          Length = 52666

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 251   cctcagcttcctcttcatttctgcccat 278
             ||||||||||| ||||||||| ||||||
Sbjct: 51217 cctcagcttccccttcatttcagcccat 51190

>emb|CR708314.2|CNS0G9HI Tetraodon nigroviridis full-length cDNA
          Length = 499

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 4   atcaaaccttttagcaacat 23
           ||||||||||||||||||||
Sbjct: 333 atcaaaccttttagcaacat 352

>emb|AL773589.3| Human DNA sequence from clone DAQB-196C18 on chromosome 6 Contains
            the central part of the DDR1 gene for discoidin domain
            receptor family, member 1, and no CpG islands, complete
            sequence
          Length = 15168

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 251  cctcagcttcctcttcatttctgcccat 278
            ||||||||||| ||||||||| ||||||
Sbjct: 8367 cctcagcttccccttcatttcagcccat 8340

>emb|AL662870.16| Human DNA sequence from clone XXbac-70P20 on chromosome 6 contains the
             DDR1 gene for discoidin domain receptor family, member 1,
             a putative novel transcript and two CpG islands, complete
             sequence
          Length = 61698

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 251   cctcagcttcctcttcatttctgcccat 278
             ||||||||||| ||||||||| ||||||
Sbjct: 44099 cctcagcttccccttcatttcagcccat 44072

>emb|AL662854.7| Human DNA sequence from clone XXbac-105N19 on chromosome 6 contains the
             DDR1 gene for discoidin domain receptor family, member 1,
             the GTF2H4 gene for general transcrition factor IIH,
             polypeptide 4, 52kDa, the gene for KIAA1885 protein, two
             putative novel transcripts, the gene for DPCR1 protein and
             four CpG islands, complete sequence
          Length = 84474

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 251   cctcagcttcctcttcatttctgcccat 278
             ||||||||||| ||||||||| ||||||
Sbjct: 15234 cctcagcttccccttcatttcagcccat 15207

>gb|AY143971.1| Arabidopsis thaliana At4g00090/F6N15_8 mRNA, complete cds
          Length = 1293

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 tgcatcatctagcttgaaca 355
           ||||||||||||||||||||
Sbjct: 354 tgcatcatctagcttgaaca 335

>emb|AL031657.5|HS28F12 Human DNA sequence from clone RP1-28F12 on chromosome 20q11.22-12
             Contains the 5' end of the PPP1R16B gene for protein
             phosphatase 1 regulatory (inhibitory) subunit 16B and a
             CpG island, complete sequence
          Length = 120630

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   tgcacctcagcttcctcttc 266
             ||||||||||||||||||||
Sbjct: 83983 tgcacctcagcttcctcttc 83964

>emb|AL161471.2|ATCHRIV1 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 1
          Length = 197119

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 336   tgcatcatctagcttgaaca 355
             ||||||||||||||||||||
Sbjct: 33791 tgcatcatctagcttgaaca 33772

>emb|CR759747.7| Human DNA sequence from clone DADB-160J14 on chromosome 6, complete
            sequence
          Length = 114883

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 251  cctcagcttcctcttcatttctgcccat 278
            ||||||||||| ||||||||| ||||||
Sbjct: 6435 cctcagcttccccttcatttcagcccat 6408

>dbj|AB210150.1| Pan troglodytes DDR1 gene for discoidin receptor tyrosine kinase
            isoform b, complete cds, cell_line: Ericka
          Length = 14676

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 251  cctcagcttcctcttcatttctgcccat 278
            ||||||||||| ||||||||| ||||||
Sbjct: 3269 cctcagcttccccttcatttcagcccat 3242

>dbj|AB210149.1| Pan troglodytes DDR1 gene for discoidin receptor tyrosine kinase
            isoform b, complete cds, cell_line: Borie
          Length = 14676

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 251  cctcagcttcctcttcatttctgcccat 278
            ||||||||||| ||||||||| ||||||
Sbjct: 3269 cctcagcttccccttcatttcagcccat 3242

>dbj|AB202100.1| Homo sapiens DDR1 gene for discoidin domain receptor family, member
            1, complete cds
          Length = 14673

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 251  cctcagcttcctcttcatttctgcccat 278
            ||||||||||| ||||||||| ||||||
Sbjct: 3247 cctcagcttccccttcatttcagcccat 3220

>emb|BX927194.9| Human DNA sequence from clone DAMA-342O2 on chromosome 6, complete
             sequence
          Length = 110208

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 251   cctcagcttcctcttcatttctgcccat 278
             ||||||||||| ||||||||| ||||||
Sbjct: 64498 cctcagcttccccttcatttcagcccat 64471

>gb|AY056436.1| Arabidopsis thaliana AT4g00090/F6N15_8 mRNA, complete cds
          Length = 1686

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 tgcatcatctagcttgaaca 355
           ||||||||||||||||||||
Sbjct: 460 tgcatcatctagcttgaaca 441

>gb|AC006262.2|AC006262 Homo sapiens chromosome 19, BAC BC264576 (CTC-297N14), complete
             sequence
          Length = 107573

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   tcatttctgcccatgttcag 284
             ||||||||||||||||||||
Sbjct: 82269 tcatttctgcccatgttcag 82288

>gb|AC159231.2| Mus musculus BAC clone RP24-387F20 from chromosome 13, complete sequence
          Length = 150809

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 369    tctaataacctacagcgacatatg 392
              |||||||||||||||| |||||||
Sbjct: 116015 tctaataacctacagccacatatg 115992

>gb|AC148705.1| Macaca mulatta Major Histocompatibility Complex MMU348N13, complete
              sequence
          Length = 186491

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 251    cctcagcttcctcttcatttctgcccat 278
              ||||||||||| ||||||||| ||||||
Sbjct: 176658 cctcagcttccccttcatttcagcccat 176631

>gb|AC148704.1| Macaca mulatta Major Histocompatibility Complex BAC MMU337E21, complete
             sequence
          Length = 147539

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 251   cctcagcttcctcttcatttctgcccat 278
             ||||||||||| ||||||||| ||||||
Sbjct: 78128 cctcagcttccccttcatttcagcccat 78101

>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds
          Length = 3284914

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 251     cctcagcttcctcttcatttctgcccat 278
               ||||||||||| ||||||||| ||||||
Sbjct: 1549395 cctcagcttccccttcatttcagcccat 1549422

>emb|BX826417.1|CNS0A3AW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB24ZF11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1619

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 tgcatcatctagcttgaaca 355
           ||||||||||||||||||||
Sbjct: 429 tgcatcatctagcttgaaca 410

>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 251     cctcagcttcctcttcatttctgcccat 278
               ||||||||||| ||||||||| ||||||
Sbjct: 1051450 cctcagcttccccttcatttcagcccat 1051477

>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region
          Length = 1750601

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 251    cctcagcttcctcttcatttctgcccat 278
              ||||||||||| ||||||||| ||||||
Sbjct: 625581 cctcagcttccccttcatttcagcccat 625608

>dbj|AB088102.1| Homo sapiens DDR gene for receptor tyrosine kinase, complete cds
          Length = 14673

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 251  cctcagcttcctcttcatttctgcccat 278
            ||||||||||| ||||||||| ||||||
Sbjct: 3247 cctcagcttccccttcatttcagcccat 3220

>gb|AC004211.1|AC004211 Homo sapiens clone UWGC:Y67C112 from 6p21, complete sequence
          Length = 48731

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 251   cctcagcttcctcttcatttctgcccat 278
             ||||||||||| ||||||||| ||||||
Sbjct: 33114 cctcagcttccccttcatttcagcccat 33141

>gb|AF069299.1|F6N15 Arabidopsis thaliana BAC F6N15
          Length = 95643

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 336   tgcatcatctagcttgaaca 355
             ||||||||||||||||||||
Sbjct: 28653 tgcatcatctagcttgaaca 28634

>emb|CT009604.11| Mouse DNA sequence from clone RP23-4J22 on chromosome 13, complete
              sequence
          Length = 209356

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 369    tctaataacctacagcgacatatg 392
              |||||||||||||||| |||||||
Sbjct: 115668 tctaataacctacagccacatatg 115691

>dbj|AB023050.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region,
             clone:832F2, complete sequence
          Length = 112018

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 251   cctcagcttcctcttcatttctgcccat 278
             ||||||||||| ||||||||| ||||||
Sbjct: 26480 cctcagcttccccttcatttcagcccat 26507


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,997,303
Number of Sequences: 3902068
Number of extensions: 3997303
Number of successful extensions: 67327
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67263
Number of HSP's gapped (non-prelim): 64
length of query: 409
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 387
effective length of database: 17,147,199,772
effective search space: 6635966311764
effective search space used: 6635966311764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)