ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome... 60 5e-06
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
6dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
7dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 60 5e-06
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 60 5e-06
10gb|AC129226.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
11dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
12dbj|AP005881.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
13emb|BX323449.13| Zebrafish DNA sequence from clone DKEYP-115E12 ... 44 0.27
14gb|AC127434.1| Mus musculus BAC clone RP23-189J11 from 19, compl... 42 1.1
15emb|AL390840.17| Human DNA sequence from clone RP13-213K19 on ch... 42 1.1
16gb|AC158351.4| Mus musculus chromosome 8, clone RP24-274N3, comp... 42 1.1
17gb|AC092376.3| Homo sapiens chromosome 16 clone RP11-679B19, com... 42 1.1
18gb|AF087677.1|AF087677 Neisseria flavescens penicillin-binding p... 42 1.1
19gb|AC102654.7| Mus musculus chromosome 1, clone RP23-2K13, compl... 40 4.3
20gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.3
21gb|AY083632.1| Lecanopteris crustacea trnL-trnF intergenic space... 40 4.3
22gb|AY083629.1| Lecanopteris lomarioides trnL-trnF intergenic spa... 40 4.3
23gb|DQ164508.1| Microsorum punctatum trnL-trnF intergenic spacer,... 40 4.3
24emb|BX470139.9| Zebrafish DNA sequence from clone CH211-141O12 i... 40 4.3
25dbj|AK149044.1| Mus musculus 2 days neonate sympathetic ganglion... 40 4.3
26emb|BX548163.15| Zebrafish DNA sequence from clone CH211-135J7 i... 40 4.3
27gb|AC118134.3| Oryza sativa chromosome 3 BAC OSJNBb0041J20 genom... 40 4.3
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
29gb|AC109617.11| Mus musculus chromosome 15, clone RP24-360D1, co... 40 4.3
30dbj|AB013390.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 4.3
31emb|AL929494.8| Zebrafish DNA sequence from clone CH211-127N19 i... 40 4.3 
>gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             B1356F10, complete sequence
          Length = 170681

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 52/58 (89%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                       
Query: 267   cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtat 324
             ||||||| ||||| |||||||||| ||| ||||| |||||||||||| ||||||||||
Sbjct: 93991 cattagctaggtc-ttttgttctcttgtcggcaattgaatctgtacatgctgttgtat 94047
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 52/58 (89%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                          
Query: 267      cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtat 324
                ||||||| ||||| |||||||||| ||| ||||| |||||||||||| ||||||||||
Sbjct: 21378751 cattagctaggtc-ttttgttctcttgtcggcaattgaatctgtacatgctgttgtat 21378695
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 52/58 (89%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                          
Query: 267      cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtat 324
                ||||||| ||||| |||||||||| ||| ||||| |||||||||||| ||||||||||
Sbjct: 21570472 cattagctaggtc-ttttgttctcttgtcggcaattgaatctgtacatgctgttgtat 21570528



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 51/58 (87%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                          
Query: 267      cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtat 324
                ||||||| ||||| ||||||| ||||||  |||| |||||||||||| ||||||||||
Sbjct: 26065032 cattagctaggtc-ttttgttgtcctgtcagcaattgaatctgtacatgctgttgtat 26064976
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 52/58 (89%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                         
Query: 267     cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtat 324
               ||||||| ||||| |||||||||||||| ||||| |||||||||||| ||| ||||||
Sbjct: 3246013 cattagctaggtc-ttttgttctcctgtcggcaattgaatctgtacatgctattgtat 3245957
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 52/58 (89%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                          
Query: 267      cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtat 324
                ||||||| ||||| ||||||| |||||| ||||| |||||||||||| ||||||||||
Sbjct: 27859925 cattagctaggtc-ttttgttgtcctgtcggcaattgaatctgtacatgctgttgtat 27859981
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>dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1144G04
          Length = 194459

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 52/58 (89%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                       
Query: 267   cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtat 324
             ||||||| ||||| ||||||| |||||| ||||| |||||||||||| ||||||||||
Sbjct: 46606 cattagctaggtc-ttttgttgtcctgtcggcaattgaatctgtacatgctgttgtat 46662
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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 52/58 (89%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                       
Query: 267   cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtat 324
             ||||||| ||||| |||||||||||||| ||||| |||||||||||| ||| ||||||
Sbjct: 55706 cattagctaggtc-ttttgttctcctgtcggcaattgaatctgtacatgctattgtat 55650
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 52/58 (89%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                          
Query: 267      cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtat 324
                ||||||| ||||| |||||||||| ||| ||||| |||||||||||| ||||||||||
Sbjct: 21880671 cattagctaggtc-ttttgttctcttgtcggcaattgaatctgtacatgctgttgtat 21880727



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 51/58 (87%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                          
Query: 267      cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtat 324
                ||||||| ||||| ||||||| ||||||  |||| |||||||||||| ||||||||||
Sbjct: 26383728 cattagctaggtc-ttttgttgtcctgtcagcaattgaatctgtacatgctgttgtat 26383672
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 52/58 (89%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                          
Query: 267      cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtat 324
                ||||||| ||||| |||||||||| ||| ||||| |||||||||||| ||||||||||
Sbjct: 21304970 cattagctaggtc-ttttgttctcttgtcggcaattgaatctgtacatgctgttgtat 21304914
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>gb|AC129226.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0024E08, complete sequence
          Length = 131946

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 51/58 (87%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                       
Query: 267   cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtat 324
             ||||||| ||||| ||||||| ||||||  |||| |||||||||||| ||||||||||
Sbjct: 88599 cattagctaggtc-ttttgttgtcctgtcagcaattgaatctgtacatgctgttgtat 88543
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 51/58 (87%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                          
Query: 267      cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtat 324
                ||||||| ||||| ||||||| || ||| ||||| |||||||||||| ||||||||||
Sbjct: 10641450 cattagctaggtc-ttttgttgtcttgtcggcaattgaatctgtacatgctgttgtat 10641394
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>dbj|AP005881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0057I13
          Length = 156330

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 51/58 (87%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                       
Query: 267   cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtat 324
             ||||||| ||||| ||||||| || ||| ||||| |||||||||||| ||||||||||
Sbjct: 93762 cattagctaggtc-ttttgttgtcttgtcggcaattgaatctgtacatgctgttgtat 93706
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>emb|BX323449.13| Zebrafish DNA sequence from clone DKEYP-115E12 in linkage group 14,
              complete sequence
          Length = 179115

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 105    acaacatgtcacacgagttaat 126
              ||||||||||||||||||||||
Sbjct: 113006 acaacatgtcacacgagttaat 113027
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>gb|AC127434.1| Mus musculus BAC clone RP23-189J11 from 19, complete sequence
          Length = 199422

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 161    aaaagaaagaatgttgctgct 181
              |||||||||||||||||||||
Sbjct: 162253 aaaagaaagaatgttgctgct 162233
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>emb|AL390840.17| Human DNA sequence from clone RP13-213K19 on chromosome X Contains a
             tubulin beta polypeptide pseudogene, complete sequence
          Length = 197611

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 125   atttacagagctgttacatca 145
             |||||||||||||||||||||
Sbjct: 80852 atttacagagctgttacatca 80832
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>gb|AC158351.4| Mus musculus chromosome 8, clone RP24-274N3, complete sequence
          Length = 167820

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 131   agagctgttacatcacttggc 151
             |||||||||||||||||||||
Sbjct: 62982 agagctgttacatcacttggc 63002
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>gb|AC092376.3| Homo sapiens chromosome 16 clone RP11-679B19, complete sequence
          Length = 168083

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    ccaacacagtggggagtggct 79
             |||||||||||||||||||||
Sbjct: 46856 ccaacacagtggggagtggct 46876
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>gb|AF087677.1|AF087677 Neisseria flavescens penicillin-binding protein 1 (ponA) gene,
            complete cds
          Length = 3247

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 294  ttggcaactgaatctgtacac 314
            |||||||||||||||||||||
Sbjct: 1269 ttggcaactgaatctgtacac 1249
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>gb|AC102654.7| Mus musculus chromosome 1, clone RP23-2K13, complete sequence
          Length = 245404

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     atccaacacagtggggagtg 76
              ||||||||||||||||||||
Sbjct: 191667 atccaacacagtggggagtg 191686
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 97       acagctctacaacatgtcac 116
                ||||||||||||||||||||
Sbjct: 16277011 acagctctacaacatgtcac 16276992
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>gb|AY083632.1| Lecanopteris crustacea trnL-trnF intergenic spacer, chloroplast
           sequence
          Length = 211

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 209 ccaattcatgtacggaaaaa 228
           ||||||||||||||||||||
Sbjct: 189 ccaattcatgtacggaaaaa 170
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>gb|AY083629.1| Lecanopteris lomarioides trnL-trnF intergenic spacer, chloroplast
           sequence
          Length = 172

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 209 ccaattcatgtacggaaaaa 228
           ||||||||||||||||||||
Sbjct: 172 ccaattcatgtacggaaaaa 153
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>gb|DQ164508.1| Microsorum punctatum trnL-trnF intergenic spacer, partial sequence;
           chloroplast
          Length = 345

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 209 ccaattcatgtacggaaaaa 228
           ||||||||||||||||||||
Sbjct: 280 ccaattcatgtacggaaaaa 261
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>emb|BX470139.9| Zebrafish DNA sequence from clone CH211-141O12 in linkage group 5,
              complete sequence
          Length = 185997

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      acgaaaatatgttgcatttt 23
              ||||||||||||||||||||
Sbjct: 113152 acgaaaatatgttgcatttt 113171
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>dbj|AK149044.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
          full-length enriched library, clone:7120478L10
          product:hypothetical protein, full insert sequence
          Length = 2474

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 57 atccaacacagtggggagtg 76
          ||||||||||||||||||||
Sbjct: 73 atccaacacagtggggagtg 54
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>emb|BX548163.15| Zebrafish DNA sequence from clone CH211-135J7 in linkage group 10,
              complete sequence
          Length = 132400

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 286    ttctcctgttggcaactgaatctg 309
              |||||| |||||||||||||||||
Sbjct: 123590 ttctcccgttggcaactgaatctg 123613
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>gb|AC118134.3| Oryza sativa chromosome 3 BAC OSJNBb0041J20 genomic sequence, complete
             sequence
          Length = 135585

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    acagctctacaacatgtcac 116
             ||||||||||||||||||||
Sbjct: 75027 acagctctacaacatgtcac 75008
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 97       acagctctacaacatgtcac 116
                ||||||||||||||||||||
Sbjct: 16270644 acagctctacaacatgtcac 16270625
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>gb|AC109617.11| Mus musculus chromosome 15, clone RP24-360D1, complete sequence
          Length = 189763

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    aaaagaaagaatgttgctgc 180
              ||||||||||||||||||||
Sbjct: 119224 aaaagaaagaatgttgctgc 119243
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>dbj|AB013390.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9I9
          Length = 51860

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 7     aaaatatgttgcatttttcgtaat 30
             |||||||||||| |||||||||||
Sbjct: 31388 aaaatatgttgcgtttttcgtaat 31411
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>emb|AL929494.8| Zebrafish DNA sequence from clone CH211-127N19 in linkage group 20,
             complete sequence
          Length = 98841

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 286   ttctcctgttggcaactgaatctg 309
             |||||| |||||||||||||||||
Sbjct: 43670 ttctcccgttggcaactgaatctg 43647


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,115,476
Number of Sequences: 3902068
Number of extensions: 3115476
Number of successful extensions: 46466
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46257
Number of HSP's gapped (non-prelim): 209
length of query: 325
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 303
effective length of database: 17,147,199,772
effective search space: 5195601530916
effective search space used: 5195601530916
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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