ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl09b08 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 80.5 bits (197), Expect = 9e-16 Identities = 36/43 (83%), Positives = 39/43 (90%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 DP+LKNR GPA+FPYMLLYPNTSDH G A GLTA+GIPNSISI Sbjct: 820 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 73.6 bits (179), Expect = 1e-13 Identities = 33/43 (76%), Positives = 37/43 (86%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 DP LKNR GPA FPY L++PNTSD+ G AEG+TARGIPNSISI Sbjct: 821 DPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 72.4 bits (176), Expect = 2e-13 Identities = 34/43 (79%), Positives = 36/43 (83%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 D LKNR GPA FPYMLLYPNTSD TG A G+TA+GIPNSISI Sbjct: 824 DAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 68.6 bits (166), Expect = 4e-12 Identities = 32/43 (74%), Positives = 33/43 (76%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 DP KNR GP FPY LLYPNTSD G A GL+ARGIPNSISI Sbjct: 828 DPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 60.8 bits (146), Expect = 7e-10 Identities = 30/41 (73%), Positives = 33/41 (80%), Gaps = 1/41 (2%) Frame = -2 Query: 384 LKNRTGPARFPYMLLYPNTSDHTGQ-AEGLTARGIPNSISI 265 LKNR GP + PYMLLYPNTSD T + +GLTA GIPNSISI Sbjct: 837 LKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 50.8 bits (120), Expect = 8e-07 Identities = 26/43 (60%), Positives = 30/43 (69%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 D L+NR GPA+ PY LLYP++ EGLT RGIPNSISI Sbjct: 817 DETLRNRYGPAKMPYTLLYPSSE------EGLTFRGIPNSISI 853
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 50.4 bits (119), Expect = 1e-06 Identities = 25/43 (58%), Positives = 29/43 (67%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 D L+NR GP + PY LLYP++ EGLT RGIPNSISI Sbjct: 830 DESLRNRYGPVKMPYTLLYPSSE------EGLTCRGIPNSISI 866
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 50.1 bits (118), Expect = 1e-06 Identities = 25/43 (58%), Positives = 28/43 (65%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 DP L+NRTGP + PY LL H EGLT +GIPNSISI Sbjct: 828 DPSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 49.3 bits (116), Expect = 2e-06 Identities = 25/43 (58%), Positives = 28/43 (65%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 D L NR GP + PY LL+PN +EGLT RGIPNSISI Sbjct: 830 DQSLSNRLGPVQLPYTLLHPN-------SEGLTCRGIPNSISI 865
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 49.3 bits (116), Expect = 2e-06 Identities = 25/43 (58%), Positives = 29/43 (67%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 D +L+NR GP PY LLYP++ EGLT RGIPNSISI Sbjct: 825 DEKLRNRHGPVEMPYTLLYPSSK------EGLTFRGIPNSISI 861
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 47.8 bits (112), Expect = 6e-06 Identities = 24/43 (55%), Positives = 27/43 (62%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 D L+NR GP + PY +L P D EGLT RGIPNSISI Sbjct: 825 DSSLRNRNGPVKMPYTVLLPTCED-----EGLTFRGIPNSISI 862
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 47.8 bits (112), Expect = 6e-06 Identities = 24/43 (55%), Positives = 29/43 (67%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 DP L +R GP + PY LL+P++ EGLT RGIPNSISI Sbjct: 828 DPSLYHRVGPVQLPYTLLHPSSK------EGLTFRGIPNSISI 864
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 47.8 bits (112), Expect = 6e-06 Identities = 26/44 (59%), Positives = 30/44 (68%), Gaps = 1/44 (2%) Frame = -2 Query: 393 DPQLK-NRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 DP L+ NR GP + PY LLYP++ EGLT RGIPNSISI Sbjct: 802 DPSLQGNRLGPVQLPYTLLYPSSE------EGLTFRGIPNSISI 839
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 47.0 bits (110), Expect = 1e-05 Identities = 24/43 (55%), Positives = 29/43 (67%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 D +L+NR GP + PY LL P++ EGLT RGIPNSISI Sbjct: 821 DEKLRNRCGPVQMPYTLLLPSSK------EGLTFRGIPNSISI 857
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 44.7 bits (104), Expect = 5e-05 Identities = 21/39 (53%), Positives = 26/39 (66%) Frame = -2 Query: 381 KNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 KNR+GP PY LL+P + EGLT +GIPNS+SI Sbjct: 827 KNRSGPVNVPYTLLFPTSE------EGLTGKGIPNSVSI 859
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 44.7 bits (104), Expect = 5e-05 Identities = 22/43 (51%), Positives = 28/43 (65%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 D LKNRTG + PY LL+P++ G+T RGIPNS+SI Sbjct: 823 DETLKNRTGLVKMPYTLLFPSSEG------GVTGRGIPNSVSI 859
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/40 (52%), Positives = 25/40 (62%) Frame = -2 Query: 384 LKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 L NRTGP PY LL+P + GLT +GIPNS+SI Sbjct: 827 LTNRTGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 860
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 42.4 bits (98), Expect = 3e-04 Identities = 21/37 (56%), Positives = 25/37 (67%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGI 283 D L+NRTGPA+ PY LLYP++ EGLT RGI Sbjct: 711 DETLRNRTGPAKMPYTLLYPSSE------EGLTFRGI 741
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 41.6 bits (96), Expect = 5e-04 Identities = 21/43 (48%), Positives = 26/43 (60%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 D L NR+GP PY LL+P + GLT +GIPNS+SI Sbjct: 825 DNILTNRSGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 861
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 37.0 bits (84), Expect = 0.011 Identities = 21/43 (48%), Positives = 25/43 (58%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 +P+ KNR G PY LL P + G+T RGIPNSISI Sbjct: 860 NPENKNRCGAGIVPYELLKPFSEP------GVTGRGIPNSISI 896
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 37.0 bits (84), Expect = 0.011 Identities = 17/43 (39%), Positives = 25/43 (58%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 DP +NR G PY L+ P++ G+T RG+PNS++I Sbjct: 863 DPSRRNRCGAGVLPYELMAPSSGP------GITCRGVPNSVTI 899
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 36.6 bits (83), Expect = 0.015 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 4/47 (8%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTG----QAEGLTARGIPNSISI 265 DP KNR G PY+LL P+ D T + + GIPNSISI Sbjct: 890 DPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 35.4 bits (80), Expect = 0.033 Identities = 19/39 (48%), Positives = 23/39 (58%) Frame = -2 Query: 381 KNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 KNR G PY LL P++ G+T RG+PNSISI Sbjct: 886 KNRCGAGVLPYELLAPSSPP------GVTCRGVPNSISI 918
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 34.3 bits (77), Expect = 0.074 Identities = 19/43 (44%), Positives = 23/43 (53%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 D +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 888 DRKLKNRCGAGILPYQLMKPFSD------SGVTGMGIPNSTSI 924
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 33.9 bits (76), Expect = 0.096 Identities = 19/43 (44%), Positives = 23/43 (53%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 D +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 905 DRKLKNRCGAGILPYQLMKPFSD------AGVTGMGIPNSTSI 941
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 31.6 bits (70), Expect = 0.48 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = -2 Query: 384 LKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 LKNR G Y LL P TS+H G+T G+P SISI Sbjct: 863 LKNRAGAGVVKYELLKP-TSEH-----GVTGMGVPYSISI 896
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = -2 Query: 393 DPQLKNRTGPARFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 265 D +NR G PY+LL P + + A+ + GIPNSISI Sbjct: 891 DDSRRNRHGAGVVPYVLLRP-LNGNPMDAKTVMEMGIPNSISI 932
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -1 Query: 367 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 278 A P H A P L H +G HRQGHPE Sbjct: 231 APDAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -1 Query: 367 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 278 A P H A P L H +G HRQGHPE Sbjct: 231 APNAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Frame = -1 Query: 391 PAAQEPHRAGQVPIHAALPKHLRPHGTGRG----AHRQGHPEQHIHL 263 P+ PHR +P H P+H PH H Q HP H H+ Sbjct: 380 PSPHTPHRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQ-HPPPHQHI 425
>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)| Length = 581 Score = 28.9 bits (63), Expect = 3.1 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Frame = -2 Query: 348 MLLYPNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMLLCYPCLLTPELACVC 184 M PN + HT Q AE A+ +P S S R L LC P + P AC Sbjct: 55 MTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKL 114 Query: 183 VCDRELCRCMNN 148 +C+ CM N Sbjct: 115 LCETVRGECMEN 126
>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 582 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/40 (47%), Positives = 22/40 (55%) Frame = +1 Query: 244 TTDVLRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWEPG 363 T DVL DG VR G +G+SR+V V EQH E G Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQHHDELG 476
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -2 Query: 192 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 55 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -2 Query: 192 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 55 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758
>THII_HALSA (Q9HQ72) Probable thiamine biosynthesis protein thiI| Length = 392 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%) Frame = +1 Query: 280 RDAPGGEPLG-----LSRVVGGVWVEQHVWEPGRPGA 375 RD PGG PLG ++ V GG+ WE R GA Sbjct: 170 RDGPGGMPLGTQQPLVALVSGGIDSPVAAWESMRRGA 206
>PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II) (PLC-148) Length = 1290 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +3 Query: 3 PEGTSHHRLHYWAKQGIFSAHDDALTGSQLS*ASACRSDPSCTHPYC 143 PE ++ HYW I S+H+ LTG Q S S+ + C C Sbjct: 319 PETMNNPLSHYW----ISSSHNTYLTGDQFSSESSLEAYARCLRMGC 361
>CB024_HUMAN (Q9BV87) Protein C2orf24| Length = 410 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = -2 Query: 276 SISI*SEHVRRRDLMLLCYPCLLTPELACVCVCDRELC-----RCMNN*GNKGACTTGLI 112 ++++ S V + L L C P P+L C E C +C+ + N +C G + Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGSM 303 Query: 111 GMRKL 97 G+R L Sbjct: 304 GLRSL 308
>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)| Length = 194 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 97 ELPHADQTRRARTLIALIIHAPAQLSV 177 ELP D TR +RTL L+ HAP + + Sbjct: 7 ELPAPDATRISRTLSYLLRHAPQTIGL 33
>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator (ARNT| protein) (Dioxin receptor, nuclear translocator) (Hypoxia-inducible factor 1 beta) (HIF-1 beta) Length = 800 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = -1 Query: 298 HRQGHPEQHIHLI*ARPSSRPHAF--VLSLL 212 HR EQH+ A+PSS+P F +LS+L Sbjct: 747 HRSSSNEQHVQPTSAQPSSQPEVFQEMLSML 777 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,612,108 Number of Sequences: 219361 Number of extensions: 1307348 Number of successful extensions: 3539 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 3365 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3511 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
