ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450983.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.006
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
3dbj|AP005573.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
4dbj|AK073815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
5dbj|AK062110.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
6gb|AC147570.3| Homo sapiens BAC clone RP11-1176F21 from UL, comp... 44 0.40
7gb|AC004527.2|AC004527 Homo sapiens chromosome 21, Neurofibromat... 44 0.40
8dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 44 0.40
9gb|AY898799.1| Homo sapiens NF1-ch21 pseudogene, complete sequence 44 0.40
10gb|AY898798.1| Homo sapiens NF1-ch18 pseudogene, complete sequence 44 0.40
11dbj|AP001634.1| Homo sapiens genomic DNA, chromosome 21q11.1 clo... 44 0.40
12dbj|AP001004.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 44 0.40
13gb|AC008194.9| Drosophila melanogaster clone BACR49A05, complete... 42 1.6
14emb|BX897699.1| Bartonella henselae strain Houston-1, complete g... 42 1.6
15emb|AL669992.1|NCB19C19 Neurospora crassa DNA linkage group II B... 42 1.6
16gb|AE003511.4| Drosophila melanogaster chromosome X, section 63 ... 42 1.6
17gb|AC108440.8| Mus musculus chromosome 19, clone RP23-379H7, com... 42 1.6
18gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, co... 40 6.2
19gb|AC145592.3| Mus musculus BAC clone RP24-335F16 from chromosom... 40 6.2
20gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosom... 40 6.2
21gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome... 40 6.2
22emb|AL589908.4| Human DNA sequence from clone RP11-258M3 on chro... 40 6.2
23emb|AL121919.20|HSJ492J12 Human DNA sequence from clone RP3-492J... 40 6.2
24gb|AC124157.4| Equus caballus clone CH241-37P10, complete sequence 40 6.2
25emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4,... 40 6.2
26gb|AC011399.6| Homo sapiens chromosome 5 clone CTB-25P15, comple... 40 6.2
27gb|AC107943.4| Homo sapiens chromosome 8, clone RP11-11I1, compl... 40 6.2
28dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 40 6.2
29gb|AC011835.8| Homo sapiens chromosome 8, clone RP11-143D15, com... 40 6.2
30gb|AC016065.14| Homo sapiens chromosome 8, clone RP11-115C21, co... 40 6.2
31gb|AC152502.5| Mus musculus BAC clone RP23-415D12 from chromosom... 40 6.2
32dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
33emb|BX470215.5| Mouse DNA sequence from clone RP24-558L5 on chro... 40 6.2
34gb|AC130533.2| Mus musculus BAC clone RP23-211B19 from 8, comple... 40 6.2
35emb|AL935192.10| Zebrafish DNA sequence from clone CH211-252B2, ... 40 6.2
36gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, c... 40 6.2
37gb|DP000020.1| Equus caballus target 1 genomic scaffold 40 6.2
38emb|AL772387.13| Mouse DNA sequence from clone RP23-133B16 on ch... 40 6.2
39emb|AL772213.7| Mouse DNA sequence from clone RP23-104G16 on chr... 40 6.2 
>ref|XM_450983.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3192

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 399  atcaggctgctcgtctgatccatca 423
            |||||||||||||||||||||||||
Sbjct: 2713 atcaggctgctcgtctgatccatca 2689
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 399      atcaggctgctcgtctgatccatca 423
                |||||||||||||||||||||||||
Sbjct: 17965479 atcaggctgctcgtctgatccatca 17965455
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>dbj|AP005573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1509_C06
          Length = 113436

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 399   atcaggctgctcgtctgatccatca 423
             |||||||||||||||||||||||||
Sbjct: 17133 atcaggctgctcgtctgatccatca 17109
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>dbj|AK073815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065D05, full
            insert sequence
          Length = 3191

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 399  atcaggctgctcgtctgatccatca 423
            |||||||||||||||||||||||||
Sbjct: 2712 atcaggctgctcgtctgatccatca 2688
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>dbj|AK062110.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B08, full
            insert sequence
          Length = 1884

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 399  atcaggctgctcgtctgatccatca 423
            |||||||||||||||||||||||||
Sbjct: 1403 atcaggctgctcgtctgatccatca 1379
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>gb|AC147570.3| Homo sapiens BAC clone RP11-1176F21 from UL, complete sequence
          Length = 191237

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 73   cacaccaaaaacaaactgatag 94
            ||||||||||||||||||||||
Sbjct: 2226 cacaccaaaaacaaactgatag 2247
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>gb|AC004527.2|AC004527 Homo sapiens chromosome 21, Neurofibromatosis 1 (NF1) related locus,
             complete sequence
          Length = 131971

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 73    cacaccaaaaacaaactgatag 94
             ||||||||||||||||||||||
Sbjct: 94121 cacaccaaaaacaaactgatag 94100
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>dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, section 4/105
          Length = 340000

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 73    cacaccaaaaacaaactgatag 94
             ||||||||||||||||||||||
Sbjct: 17742 cacaccaaaaacaaactgatag 17721
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>gb|AY898799.1| Homo sapiens NF1-ch21 pseudogene, complete sequence
          Length = 10837

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 73   cacaccaaaaacaaactgatag 94
            ||||||||||||||||||||||
Sbjct: 2583 cacaccaaaaacaaactgatag 2562
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>gb|AY898798.1| Homo sapiens NF1-ch18 pseudogene, complete sequence
          Length = 10834

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 73   cacaccaaaaacaaactgatag 94
            ||||||||||||||||||||||
Sbjct: 2577 cacaccaaaaacaaactgatag 2556
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>dbj|AP001634.1| Homo sapiens genomic DNA, chromosome 21q11.1 clone:B585O4, D21S290-LL56
             region, complete sequence
          Length = 71829

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 73    cacaccaaaaacaaactgatag 94
             ||||||||||||||||||||||
Sbjct: 33976 cacaccaaaaacaaactgatag 33955
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>dbj|AP001004.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-681B3, complete
             sequence
          Length = 182424

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 73    cacaccaaaaacaaactgatag 94
             ||||||||||||||||||||||
Sbjct: 97775 cacaccaaaaacaaactgatag 97796
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>gb|AC008194.9| Drosophila melanogaster clone BACR49A05, complete sequence
          Length = 181437

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     tctcaaaacaaattagaattc 26
             |||||||||||||||||||||
Sbjct: 64814 tctcaaaacaaattagaattc 64794
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>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 5      atctcaaaacaaattagaatt 25
              |||||||||||||||||||||
Sbjct: 337876 atctcaaaacaaattagaatt 337856
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>emb|AL669992.1|NCB19C19 Neurospora crassa DNA linkage group II BAC clone B19C19
          Length = 61082

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 411   gtctgatccatcatcactctt 431
             |||||||||||||||||||||
Sbjct: 36394 gtctgatccatcatcactctt 36414
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>gb|AE003511.4| Drosophila melanogaster chromosome X, section 63 of 74 of the complete
             sequence
          Length = 297969

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     tctcaaaacaaattagaattc 26
             |||||||||||||||||||||
Sbjct: 53196 tctcaaaacaaattagaattc 53176
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>gb|AC108440.8| Mus musculus chromosome 19, clone RP23-379H7, complete sequence
          Length = 177196

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 416  atccatcatcactcttcaggt 436
            |||||||||||||||||||||
Sbjct: 9042 atccatcatcactcttcaggt 9022
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>gb|AC113548.22| Mus musculus chromosome 9, clone RP23-268F15, complete sequence
          Length = 195273

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   caactctcccactatagcaa 222
             ||||||||||||||||||||
Sbjct: 84114 caactctcccactatagcaa 84095
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>gb|AC145592.3| Mus musculus BAC clone RP24-335F16 from chromosome y, complete sequence
          Length = 167384

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 203    caactctcccactatagcaa 222
              ||||||||||||||||||||
Sbjct: 104096 caactctcccactatagcaa 104115
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>gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosome 10, complete sequence
          Length = 179668

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 204    aactctcccactatagcaaccatc 227
              |||||||||| |||||||||||||
Sbjct: 144936 aactctcccagtatagcaaccatc 144959
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>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence
          Length = 214405

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 204    aactctcccactatagcaaccatc 227
              |||||||||| |||||||||||||
Sbjct: 198796 aactctcccagtatagcaaccatc 198773
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>emb|AL589908.4| Human DNA sequence from clone RP11-258M3 on chromosome 6, complete
            sequence
          Length = 13135

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 64   tgccaacatcacaccaaaaa 83
            ||||||||||||||||||||
Sbjct: 2445 tgccaacatcacaccaaaaa 2464
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>emb|AL121919.20|HSJ492J12 Human DNA sequence from clone RP3-492J12 on chromosome 20 Contains the
             C20orf174 gene for chromosome 20 open reading frame 174
             and a CpG island, complete sequence
          Length = 129942

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   acaggaagaaccaaggaatg 198
             ||||||||||||||||||||
Sbjct: 95346 acaggaagaaccaaggaatg 95327
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>gb|AC124157.4| Equus caballus clone CH241-37P10, complete sequence
          Length = 193986

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   ggcaaaggaataggatagaa 173
             ||||||||||||||||||||
Sbjct: 95592 ggcaaaggaataggatagaa 95611
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>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02,
              complete sequence
          Length = 173522

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      tcaaaacaaattagaattct 27
              ||||||||||||||||||||
Sbjct: 158800 tcaaaacaaattagaattct 158781
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>gb|AC011399.6| Homo sapiens chromosome 5 clone CTB-25P15, complete sequence
          Length = 174158

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   ggcaaaggaataggatagaa 173
             ||||||||||||||||||||
Sbjct: 72880 ggcaaaggaataggatagaa 72861
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>gb|AC107943.4| Homo sapiens chromosome 8, clone RP11-11I1, complete sequence
          Length = 195110

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    atgcatcatcataaccagac 275
              ||||||||||||||||||||
Sbjct: 143504 atgcatcatcataaccagac 143485
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>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 150     tcatggcaaaggaataggat 169
               ||||||||||||||||||||
Sbjct: 1782058 tcatggcaaaggaataggat 1782077
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>gb|AC011835.8| Homo sapiens chromosome 8, clone RP11-143D15, complete sequence
          Length = 182151

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    atgcatcatcataaccagac 275
              ||||||||||||||||||||
Sbjct: 175085 atgcatcatcataaccagac 175104
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>gb|AC016065.14| Homo sapiens chromosome 8, clone RP11-115C21, complete sequence
          Length = 185463

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    atgcatcatcataaccagac 275
              ||||||||||||||||||||
Sbjct: 149691 atgcatcatcataaccagac 149710
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>gb|AC152502.5| Mus musculus BAC clone RP23-415D12 from chromosome 16, complete
             sequence
          Length = 180876

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   agaaccaaggaatggcaaca 204
             ||||||||||||||||||||
Sbjct: 66984 agaaccaaggaatggcaaca 66965
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 8        tcaaaacaaattagaattct 27
                ||||||||||||||||||||
Sbjct: 27728174 tcaaaacaaattagaattct 27728155
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>emb|BX470215.5| Mouse DNA sequence from clone RP24-558L5 on chromosome X, complete
             sequence
          Length = 137502

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   caactctcccactatagcaa 222
             ||||||||||||||||||||
Sbjct: 24102 caactctcccactatagcaa 24083
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>gb|AC130533.2| Mus musculus BAC clone RP23-211B19 from 8, complete sequence
          Length = 203431

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   caactctcccactatagcaa 222
             ||||||||||||||||||||
Sbjct: 59775 caactctcccactatagcaa 59794
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>emb|AL935192.10| Zebrafish DNA sequence from clone CH211-252B2, complete sequence
          Length = 192649

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     aaaacaaattagaattctcc 29
              ||||||||||||||||||||
Sbjct: 111675 aaaacaaattagaattctcc 111694
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>gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, complete sequence
          Length = 140942

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   gacatgcttcctcgcatggt 297
             ||||||||||||||||||||
Sbjct: 62021 gacatgcttcctcgcatggt 62040
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>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    ggcaaaggaataggatagaa 173
              ||||||||||||||||||||
Sbjct: 928595 ggcaaaggaataggatagaa 928614
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>emb|AL772387.13| Mouse DNA sequence from clone RP23-133B16 on chromosome 2, complete
             sequence
          Length = 195412

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   caactctcccactatagcaa 222
             ||||||||||||||||||||
Sbjct: 19584 caactctcccactatagcaa 19603
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>emb|AL772213.7| Mouse DNA sequence from clone RP23-104G16 on chromosome 2, complete
             sequence
          Length = 218975

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 416   atccatcatcactcttcagg 435
             ||||||||||||||||||||
Sbjct: 47067 atccatcatcactcttcagg 47048


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,717,800
Number of Sequences: 3902068
Number of extensions: 3717800
Number of successful extensions: 70933
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70816
Number of HSP's gapped (non-prelim): 117
length of query: 459
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 437
effective length of database: 17,147,199,772
effective search space: 7493326300364
effective search space used: 7493326300364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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