ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y13L_BPT4 (P39505) Hypothetical 9.4 kDa protein in nrdB-nrdA int... 31 0.66
2AT12A_RABIT (Q9TV52) Potassium-transporting ATPase alpha chain 2... 30 1.5
3COL_PIG (P02703) Colipase precursor (Procolipase II) 28 4.3
4O10Z1_HUMAN (Q8NGY1) Olfactory receptor 10Z1 28 4.3
5YIV5_YEAST (P40579) Putative oxidoreductase YIR035C (EC 1.-.-.-) 28 5.6
6TLC2_CHLPN (Q9Z7U0) ADP,ATP carrier protein 2 (ADP/ATP transloca... 28 5.6
7COL_SPETR (Q91XL7) Colipase precursor 28 7.3
8COL_HUMAN (P04118) Colipase precursor 28 7.3
9MYCB2_HUMAN (O75592) Probable ubiquitin ligase protein MYCBP2 (E... 27 9.5
10O10K1_HUMAN (Q8NGX5) Olfactory receptor 10K1 27 9.5

>Y13L_BPT4 (P39505) Hypothetical 9.4 kDa protein in nrdB-nrdA intergenic|
           region
          Length = 83

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 172 LHPKYHTFTRIKNKRSIQNTTNLLPMRQQIVHYLPICRHQKKKPNRNNKINYSYKESR 345
           L+P Y T +  ++    + T +L+ +R +     P C H  KK N+ N + + Y + +
Sbjct: 21  LNPMYGTISPTRDVPHTKETRDLISLRTKQGAEYPPCPHCGKKVNKGNALRWHYDKCK 78



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>AT12A_RABIT (Q9TV52) Potassium-transporting ATPase alpha chain 2 (EC 3.6.3.10)|
           (Proton pump) (Non-gastric H(+)/K(+) ATPase alpha
           subunit) (HK alpha 2)
          Length = 1094

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +3

Query: 27  WLTFGIKFVAKVGTSVVTIYMRYVAATI*ITCGC----NNLNNKTHESDFVKITPKISHI 194
           W+ FGI++V+    S+  +Y+  V A + I  G         +    + F K+ P+ + +
Sbjct: 182 WIAFGIQYVSNPSASLDRVYLGTVLAVVVILTGIFAYYQEAKSTNIMASFCKMIPQQAVV 241

Query: 195 YKDQE 209
            +D E
Sbjct: 242 IRDSE 246



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>COL_PIG (P02703) Colipase precursor (Procolipase II)|
          Length = 112

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 128 AATCYSNCCSHITHVNCHNRCANFGNEFNTEC 33
           +A C SNCC H T ++  +RCA    E N+EC
Sbjct: 37  SAQCKSNCCQHDTILSL-SRCALKARE-NSEC 66



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>O10Z1_HUMAN (Q8NGY1) Olfactory receptor 10Z1|
          Length = 313

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -3

Query: 212 LFLILVNV*YFGCNFNKIRLVCFVIQIVAAT----CYSNCCSHITHVNCHNRCANF 57
           L L+++ V +F    +   ++  +++I +A      +S C SH+T V  H  CA+F
Sbjct: 202 LSLLVLLVSFFFITISYAYILAAILRIPSAEGQKKAFSTCASHLTVVIIHYGCASF 257



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>YIV5_YEAST (P40579) Putative oxidoreductase YIR035C (EC 1.-.-.-)|
          Length = 254

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 271 GNVLFVVSLAVNLWYFEWNAY 209
           GNV+FV S A N+++  W AY
Sbjct: 130 GNVVFVSSDACNMYFSSWGAY 150



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>TLC2_CHLPN (Q9Z7U0) ADP,ATP carrier protein 2 (ADP/ATP translocase 2)|
          Length = 540

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 35  IRY*IRCQSWHICCDNLHALCGCNNLNNMWL 127
           + Y   C SWH    NL  L  C+ L  +WL
Sbjct: 212 VAYSFACDSWHSVMLNLTMLITCSGLIMIWL 242



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>COL_SPETR (Q91XL7) Colipase precursor|
          Length = 111

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 128 AATCYSNCCSHITHVNCHNRCANFGNEFNTECEP 27
           +A C S+CC H + +    RC    +E N+EC P
Sbjct: 36  SAQCKSSCCQHFSPLGV-ARCTRKASE-NSECSP 67



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>COL_HUMAN (P04118) Colipase precursor|
          Length = 112

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 128 AATCYSNCCSHITHVNCHNRCANFGNEFNTEC 33
           +A C SNCC H + +    RC +  +E N+EC
Sbjct: 37  SAQCKSNCCQHSSALGL-ARCTSMASE-NSEC 66



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>MYCB2_HUMAN (O75592) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc|
            binding protein 2) (Protein associated with Myc)
            (Pam/highwire/rpm-1 protein)
          Length = 4641

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 155  LVCFVIQIVAATCYSNCCSHITHVNCHNR 69
            ++CF   + AA      CSHI H+ C  R
Sbjct: 4392 MICFTEALSAAPAIQLDCSHIFHLQCCRR 4420



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>O10K1_HUMAN (Q8NGX5) Olfactory receptor 10K1|
          Length = 313

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -3

Query: 161 IRLVCFVIQIVAAT----CYSNCCSHITHVNCHNRCANF 57
           IR++  +++I ++      +S C SH+  V  H  CA+F
Sbjct: 219 IRIISAILKIPSSVGRYKTFSTCASHLIVVTVHYSCASF 257


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,726,988
Number of Sequences: 219361
Number of extensions: 845491
Number of successful extensions: 2087
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2087
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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