Clone Name | rbastl09b03 |
---|---|
Clone Library Name | barley_pub |
>Y13L_BPT4 (P39505) Hypothetical 9.4 kDa protein in nrdB-nrdA intergenic| region Length = 83 Score = 31.2 bits (69), Expect = 0.66 Identities = 15/58 (25%), Positives = 29/58 (50%) Frame = +1 Query: 172 LHPKYHTFTRIKNKRSIQNTTNLLPMRQQIVHYLPICRHQKKKPNRNNKINYSYKESR 345 L+P Y T + ++ + T +L+ +R + P C H KK N+ N + + Y + + Sbjct: 21 LNPMYGTISPTRDVPHTKETRDLISLRTKQGAEYPPCPHCGKKVNKGNALRWHYDKCK 78
>AT12A_RABIT (Q9TV52) Potassium-transporting ATPase alpha chain 2 (EC 3.6.3.10)| (Proton pump) (Non-gastric H(+)/K(+) ATPase alpha subunit) (HK alpha 2) Length = 1094 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%) Frame = +3 Query: 27 WLTFGIKFVAKVGTSVVTIYMRYVAATI*ITCGC----NNLNNKTHESDFVKITPKISHI 194 W+ FGI++V+ S+ +Y+ V A + I G + + F K+ P+ + + Sbjct: 182 WIAFGIQYVSNPSASLDRVYLGTVLAVVVILTGIFAYYQEAKSTNIMASFCKMIPQQAVV 241 Query: 195 YKDQE 209 +D E Sbjct: 242 IRDSE 246
>COL_PIG (P02703) Colipase precursor (Procolipase II)| Length = 112 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -3 Query: 128 AATCYSNCCSHITHVNCHNRCANFGNEFNTEC 33 +A C SNCC H T ++ +RCA E N+EC Sbjct: 37 SAQCKSNCCQHDTILSL-SRCALKARE-NSEC 66
>O10Z1_HUMAN (Q8NGY1) Olfactory receptor 10Z1| Length = 313 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Frame = -3 Query: 212 LFLILVNV*YFGCNFNKIRLVCFVIQIVAAT----CYSNCCSHITHVNCHNRCANF 57 L L+++ V +F + ++ +++I +A +S C SH+T V H CA+F Sbjct: 202 LSLLVLLVSFFFITISYAYILAAILRIPSAEGQKKAFSTCASHLTVVIIHYGCASF 257
>YIV5_YEAST (P40579) Putative oxidoreductase YIR035C (EC 1.-.-.-)| Length = 254 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -1 Query: 271 GNVLFVVSLAVNLWYFEWNAY 209 GNV+FV S A N+++ W AY Sbjct: 130 GNVVFVSSDACNMYFSSWGAY 150
>TLC2_CHLPN (Q9Z7U0) ADP,ATP carrier protein 2 (ADP/ATP translocase 2)| Length = 540 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +2 Query: 35 IRY*IRCQSWHICCDNLHALCGCNNLNNMWL 127 + Y C SWH NL L C+ L +WL Sbjct: 212 VAYSFACDSWHSVMLNLTMLITCSGLIMIWL 242
>COL_SPETR (Q91XL7) Colipase precursor| Length = 111 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -3 Query: 128 AATCYSNCCSHITHVNCHNRCANFGNEFNTECEP 27 +A C S+CC H + + RC +E N+EC P Sbjct: 36 SAQCKSSCCQHFSPLGV-ARCTRKASE-NSECSP 67
>COL_HUMAN (P04118) Colipase precursor| Length = 112 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -3 Query: 128 AATCYSNCCSHITHVNCHNRCANFGNEFNTEC 33 +A C SNCC H + + RC + +E N+EC Sbjct: 37 SAQCKSNCCQHSSALGL-ARCTSMASE-NSEC 66
>MYCB2_HUMAN (O75592) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc| binding protein 2) (Protein associated with Myc) (Pam/highwire/rpm-1 protein) Length = 4641 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -3 Query: 155 LVCFVIQIVAATCYSNCCSHITHVNCHNR 69 ++CF + AA CSHI H+ C R Sbjct: 4392 MICFTEALSAAPAIQLDCSHIFHLQCCRR 4420
>O10K1_HUMAN (Q8NGX5) Olfactory receptor 10K1| Length = 313 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 4/39 (10%) Frame = -3 Query: 161 IRLVCFVIQIVAAT----CYSNCCSHITHVNCHNRCANF 57 IR++ +++I ++ +S C SH+ V H CA+F Sbjct: 219 IRIISAILKIPSSVGRYKTFSTCASHLIVVTVHYSCASF 257 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,726,988 Number of Sequences: 219361 Number of extensions: 845491 Number of successful extensions: 2087 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2016 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2087 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)