ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|BX511019.6| Zebrafish DNA sequence from clone CH211-89O9 in ... 46 0.075
2emb|AL445526.9| Human DNA sequence from clone RP11-32I2 on chrom... 44 0.30
3gb|AC102117.13| Mus musculus chromosome 7, clone RP23-154P9, com... 44 0.30
4gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge... 44 0.30
5emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chr... 44 0.30
6gb|AC100269.7| Mus musculus chromosome 5, clone RP23-67B9, compl... 42 1.2
7gb|AC170805.2| Mus musculus BAC clone RP24-363B14 from chromosom... 42 1.2
8gb|AC103388.6| Mus musculus chromosome 7, clone RP24-403B15, com... 42 1.2
9ref|XM_534392.2| PREDICTED: Canis familiaris similar to Nuclear ... 42 1.2
10gb|AC131691.4| Mus musculus BAC clone RP23-388P2 from chromosome... 42 1.2
11gb|AC012596.4| Homo sapiens BAC clone CTD-2523K17 from 7, comple... 42 1.2
12gb|AC093449.19| Mus musculus strain 129/Sv clone ct7-328a16 map ... 42 1.2
13gb|AC115007.6| Mus musculus chromosome 5, clone RP24-188P11, com... 42 1.2
14dbj|AK053908.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 42 1.2
15dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
16ref|XM_394589.2| PREDICTED: Apis mellifera similar to ENSANGP000... 42 1.2
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
18gb|AC062022.6| Homo sapiens BAC clone RP11-220I15 from 2, comple... 42 1.2
19emb|BX255954.13| Zebrafish DNA sequence from clone CH211-275D2 i... 42 1.2
20dbj|AP003212.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
21dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
22dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
23emb|AJ550897.1|TRU550897 Takifugu rubripes ptr1 gene for parathy... 42 1.2
24gb|AC163644.4| Mus musculus BAC clone RP24-394I24 from chromosom... 42 1.2
25emb|AL672039.9| Mouse DNA sequence from clone RP23-295F17 on chr... 42 1.2
26ref|NM_123438.2| Arabidopsis thaliana AGP24 AT5G40730 (AGP24) mR... 40 4.6
27gb|AC109157.10| Mus musculus chromosome 7, clone RP24-169M16, co... 40 4.6
28gb|AC111093.10| Mus musculus chromosome 3, clone RP23-170E22, co... 40 4.6
29gb|AC167129.5| Mus musculus chromosome 5, clone RP23-397D16, com... 40 4.6
30ref|NM_007332.1| Homo sapiens transient receptor potential catio... 40 4.6
31gb|AY672745.1| Allium sativum LEAFY splice variant 2 mRNA, parti... 40 4.6
32gb|AY563104.1| Allium sativum floral meristem identity control p... 40 4.6
33gb|AY563105.1| Allium sativum LEAFY spliced variant 1 mRNA, part... 40 4.6
34gb|AY458639.1| Uncultured bacterium 442 clone EBAC000-63A02 geno... 40 4.6
35emb|CR955005.2| Medicago truncatula chromosome 5 clone mte1-58c2... 40 4.6
36ref|XM_647361.1| Entamoeba histolytica HM-1:IMSS pre-mRNA splici... 40 4.6
37gb|AC113064.8| Mus musculus chromosome 5, clone RP23-262H7, comp... 40 4.6
38ref|XM_758525.1| Theileria parva strain Muguga chromosome 3 hypo... 40 4.6
39gb|AC096909.10| Rattus norvegicus 8 BAC CH230-88B13 (Children's ... 40 4.6
40emb|AL136372.8| Human DNA sequence from clone RP11-134C1 on chro... 40 4.6
41emb|Y10601.1|HSRNAALP Homo sapiens mRNA for ankyrin-like protein 40 4.6
42gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 gen... 40 4.6
43gb|AC090133.6| Homo sapiens chromosome 8, clone RP11-813L8, comp... 40 4.6
44gb|AC123777.4| Homo sapiens chromosome 8, clone RP11-252C15, com... 40 4.6
45emb|BX284634.8| Mouse DNA sequence from clone RP23-92B18 on chro... 40 4.6
46emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 40 4.6
47emb|CR859616.1| Pongo pygmaeus mRNA; cDNA DKFZp468J165 (from clo... 40 4.6
48gb|AC123900.2| Homo sapiens chromosome 3 clone RP11-640D6, compl... 40 4.6
49gb|AC044784.11| Homo sapiens chromosome 10 clone RP11-428L9, com... 40 4.6
50dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 40 4.6
51gb|AC022867.10| Homo sapiens chromosome 8, clone RP11-367C12, co... 40 4.6
52gb|AY070748.1| Arabidopsis thaliana AT5g40730/MNF13_250 mRNA seq... 40 4.6
53gb|AC016057.6| Homo sapiens chromosome 8, clone RP11-383H13, com... 40 4.6
54gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 4.6
55gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 4.6
56gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 4.6
57dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
58dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
59emb|BX833524.1|CNS09Z9Z Arabidopsis thaliana Full-length cDNA Co... 40 4.6
60emb|BX834072.1|CNS09Z1K Arabidopsis thaliana Full-length cDNA Co... 40 4.6
61emb|BX833879.1|CNS09Z5C Arabidopsis thaliana Full-length cDNA Co... 40 4.6
62emb|BX833352.1|CNS09Z2W Arabidopsis thaliana Full-length cDNA Co... 40 4.6
63emb|BX833320.1|CNS09Z2R Arabidopsis thaliana Full-length cDNA Co... 40 4.6
64emb|BX832950.1|CNS09Z4D Arabidopsis thaliana Full-length cDNA Co... 40 4.6
65emb|BX832847.1|CNS09Z57 Arabidopsis thaliana Full-length cDNA Co... 40 4.6
66gb|AC074030.17|AC074030 Homo sapiens 12 BAC RP11-425I22 (Roswell... 40 4.6
67gb|AC016144.13|AC016144 Homo sapiens 12 BAC RP11-367O10 (Roswell... 40 4.6
68dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 40 4.6
69dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 40 4.6
70dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 4.6
71emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 ... 40 4.6
72emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 40 4.6
73dbj|AP003386.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 4.6
74gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6
75gb|BC050266.1| Mus musculus polyhomeotic-like 3 (Drosophila), mR... 40 4.6
76emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 40 4.6
77emb|AL671848.7| Mouse DNA sequence from clone RP23-110K5 on chro... 40 4.6
78gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6 
>emb|BX511019.6| Zebrafish DNA sequence from clone CH211-89O9 in linkage group 1,
            complete sequence
          Length = 180744

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 297  aaaaccaaacagaaataacaaaa 319
            |||||||||||||||||||||||
Sbjct: 7326 aaaaccaaacagaaataacaaaa 7348
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>emb|AL445526.9| Human DNA sequence from clone RP11-32I2 on chromosome 9 Contains a
              pseudogene similar to part of tumor necrosis factor,
              alpha-induced protein 1 (endothelial) (TNFAIP1) (EDP1),
              complete sequence
          Length = 127029

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 267    ttacctacctatatgtagacat 288
              ||||||||||||||||||||||
Sbjct: 113190 ttacctacctatatgtagacat 113211
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>gb|AC102117.13| Mus musculus chromosome 7, clone RP23-154P9, complete sequence
          Length = 196717

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 289    caaaagaaaaaaccaaacagaaataa 314
              ||||| ||||||||||||||||||||
Sbjct: 100755 caaaacaaaaaaccaaacagaaataa 100780
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>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 295     aaaaaaccaaacagaaataacaaaat 320
               |||||| |||||||||||||||||||
Sbjct: 1231254 aaaaaaacaaacagaaataacaaaat 1231229
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>emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chromosome X, complete
              sequence
          Length = 165720

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 297    aaaaccaaacagaaataacaaa 318
              ||||||||||||||||||||||
Sbjct: 137459 aaaaccaaacagaaataacaaa 137438
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>gb|AC100269.7| Mus musculus chromosome 5, clone RP23-67B9, complete sequence
          Length = 237273

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 296    aaaaaccaaacagaaataacaaaattaac 324
              |||||| ||||||||||||||||| ||||
Sbjct: 187808 aaaaacaaaacagaaataacaaaactaac 187836
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>gb|AC170805.2| Mus musculus BAC clone RP24-363B14 from chromosome 16, complete
             sequence
          Length = 149317

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 127   gcaacaatttgaataacaaaa 147
             |||||||||||||||||||||
Sbjct: 50246 gcaacaatttgaataacaaaa 50266
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>gb|AC103388.6| Mus musculus chromosome 7, clone RP24-403B15, complete sequence
          Length = 164394

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 169   aaattacacccaaaatatcacacat 193
             |||||||||||||||| ||||||||
Sbjct: 41148 aaattacacccaaaatttcacacat 41124
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>ref|XM_534392.2| PREDICTED: Canis familiaris similar to Nuclear receptor coactivator 6
            (Amplified in breast cancer-3 protein) (Cancer-amplified
            transcriptional coactivator ASC-2) (Activating signal
            cointegrator-2) (ASC-2) (Peroxisome
            proliferator-activated receptor-interacting protein)
            (PPAR-..., transcript variant 1 (LOC477202), mRNA
          Length = 6872

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 187  cacacatttacaaggatcaag 207
            |||||||||||||||||||||
Sbjct: 6368 cacacatttacaaggatcaag 6348
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>gb|AC131691.4| Mus musculus BAC clone RP23-388P2 from chromosome 16, complete sequence
          Length = 202652

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 290    aaaagaaaaaaccaaacagaaataacaaa 318
              |||||||||| |||||||||||| |||||
Sbjct: 133245 aaaagaaaaatccaaacagaaattacaaa 133273
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>gb|AC012596.4| Homo sapiens BAC clone CTD-2523K17 from 7, complete sequence
          Length = 154859

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 129    aacaatttgaataacaaaaca 149
              |||||||||||||||||||||
Sbjct: 137464 aacaatttgaataacaaaaca 137484
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>gb|AC093449.19| Mus musculus strain 129/Sv clone ct7-328a16 map X, complete sequence
          Length = 153728

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 321   taactacagctacaaagaaag 341
             |||||||||||||||||||||
Sbjct: 44419 taactacagctacaaagaaag 44439
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>gb|AC115007.6| Mus musculus chromosome 5, clone RP24-188P11, complete sequence
          Length = 155084

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 296   aaaaaccaaacagaaataacaaaattaac 324
             |||||| ||||||||||||||||| ||||
Sbjct: 75553 aaaaacaaaacagaaataacaaaactaac 75581
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>dbj|AK053908.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130320C01 product:unclassifiable, full
            insert sequence
          Length = 2644

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 290  aaaagaaaaaaccaaacagaaataacaaa 318
            |||||||||| |||||||||||| |||||
Sbjct: 1225 aaaagaaaaatccaaacagaaattacaaa 1253
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 227     ataccacaaatttactgccaa 247
               |||||||||||||||||||||
Sbjct: 7153467 ataccacaaatttactgccaa 7153487
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>ref|XM_394589.2| PREDICTED: Apis mellifera similar to ENSANGP00000002826 (LOC411115),
            mRNA
          Length = 17253

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 157  ctgattttgttaaaattacac 177
            |||||||||||||||||||||
Sbjct: 2330 ctgattttgttaaaattacac 2350
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 295      aaaaaaccaaacagaaataacaaaa 319
                ||||| |||||||||||||||||||
Sbjct: 26566906 aaaaatccaaacagaaataacaaaa 26566882
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>gb|AC062022.6| Homo sapiens BAC clone RP11-220I15 from 2, complete sequence
          Length = 151006

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 314    acaaaattaactacagctaca 334
              |||||||||||||||||||||
Sbjct: 112099 acaaaattaactacagctaca 112079
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>emb|BX255954.13| Zebrafish DNA sequence from clone CH211-275D2 in linkage group 20,
             complete sequence
          Length = 164972

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 26    atggctcacattcggtattaa 46
             |||||||||||||||||||||
Sbjct: 51894 atggctcacattcggtattaa 51874
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>dbj|AP003212.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0049H05
          Length = 161934

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 295   aaaaaaccaaacagaaataacaaaa 319
             ||||| |||||||||||||||||||
Sbjct: 40620 aaaaatccaaacagaaataacaaaa 40596
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>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1381_H04
          Length = 130961

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 227  ataccacaaatttactgccaa 247
            |||||||||||||||||||||
Sbjct: 5572 ataccacaaatttactgccaa 5592
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>dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0592C05
          Length = 150478

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 227    ataccacaaatttactgccaa 247
              |||||||||||||||||||||
Sbjct: 105546 ataccacaaatttactgccaa 105566
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>emb|AJ550897.1|TRU550897 Takifugu rubripes ptr1 gene for parathyroid hormone receptor 1, exons
             1-13
          Length = 31774

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 295   aaaaaaccaaacagaaataacaaaattaa 323
             ||||||||||| ||||||||| |||||||
Sbjct: 29806 aaaaaaccaaaaagaaataaccaaattaa 29834
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>gb|AC163644.4| Mus musculus BAC clone RP24-394I24 from chromosome 16, complete
            sequence
          Length = 177627

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 127  gcaacaatttgaataacaaaa 147
            |||||||||||||||||||||
Sbjct: 3852 gcaacaatttgaataacaaaa 3832
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>emb|AL672039.9| Mouse DNA sequence from clone RP23-295F17 on chromosome X, complete
             sequence
          Length = 197632

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 321   taactacagctacaaagaaag 341
             |||||||||||||||||||||
Sbjct: 46849 taactacagctacaaagaaag 46869
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>ref|NM_123438.2| Arabidopsis thaliana AGP24 AT5G40730 (AGP24) mRNA, complete cds
          Length = 446

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 catcaaaagaaaaaaccaaa 305
           ||||||||||||||||||||
Sbjct: 28  catcaaaagaaaaaaccaaa 47
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>gb|AC109157.10| Mus musculus chromosome 7, clone RP24-169M16, complete sequence
          Length = 164968

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 296   aaaaaccaaacagaaataacaaaa 319
             |||||||||||||||| |||||||
Sbjct: 44913 aaaaaccaaacagaaacaacaaaa 44936
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>gb|AC111093.10| Mus musculus chromosome 3, clone RP23-170E22, complete sequence
          Length = 201202

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   aatttgaataacaaaacaca 151
             ||||||||||||||||||||
Sbjct: 59891 aatttgaataacaaaacaca 59910
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>gb|AC167129.5| Mus musculus chromosome 5, clone RP23-397D16, complete sequence
          Length = 197551

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   ccattcaaaataccacaaat 237
             ||||||||||||||||||||
Sbjct: 29805 ccattcaaaataccacaaat 29786
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>ref|NM_007332.1| Homo sapiens transient receptor potential cation channel, subfamily
            A, member 1 (TRPA1), mRNA
          Length = 5190

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 281  gtagacatcaaaagaaaaaa 300
            ||||||||||||||||||||
Sbjct: 4328 gtagacatcaaaagaaaaaa 4309
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>gb|AY672745.1| Allium sativum LEAFY splice variant 2 mRNA, partial cds,
           alternatively spliced
          Length = 570

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 292 aagaaaaaaccaaacagaaa 311
           ||||||||||||||||||||
Sbjct: 301 aagaaaaaaccaaacagaaa 320
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>gb|AY563104.1| Allium sativum floral meristem identity control protein gene,
           partial cds
          Length = 682

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 292 aagaaaaaaccaaacagaaa 311
           ||||||||||||||||||||
Sbjct: 321 aagaaaaaaccaaacagaaa 340
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>gb|AY563105.1| Allium sativum LEAFY spliced variant 1 mRNA, partial cds
          Length = 506

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 292 aagaaaaaaccaaacagaaa 311
           ||||||||||||||||||||
Sbjct: 238 aagaaaaaaccaaacagaaa 257
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>gb|AY458639.1| Uncultured bacterium 442 clone EBAC000-63A02 genomic sequence
          Length = 91075

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   cacacgagtctgattttgtt 167
             ||||||||||||||||||||
Sbjct: 10182 cacacgagtctgattttgtt 10163
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>emb|CR955005.2| Medicago truncatula chromosome 5 clone mte1-58c24, COMPLETE SEQUENCE
          Length = 106497

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    tgttgtgacaatttacatgc 90
             ||||||||||||||||||||
Sbjct: 53431 tgttgtgacaatttacatgc 53450
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>ref|XM_647361.1| Entamoeba histolytica HM-1:IMSS pre-mRNA splicing factor PRP17,
           putative (117.t00032) partial mRNA
          Length = 1203

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 303 aaacagaaataacaaaatta 322
           ||||||||||||||||||||
Sbjct: 520 aaacagaaataacaaaatta 501
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>gb|AC113064.8| Mus musculus chromosome 5, clone RP23-262H7, complete sequence
          Length = 176176

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    ccattcaaaataccacaaat 237
              ||||||||||||||||||||
Sbjct: 133828 ccattcaaaataccacaaat 133809
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>ref|XM_758525.1| Theileria parva strain Muguga chromosome 3 hypothetical protein
            (TP03_0590) partial mRNA
          Length = 4743

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 184  tatcacacatttacaaggatcaag 207
            |||||||||||||||||| |||||
Sbjct: 2234 tatcacacatttacaaggctcaag 2257
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>gb|AC096909.10| Rattus norvegicus 8 BAC CH230-88B13 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 241078

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  tagacatcaaaagaaaaaac 301
            ||||||||||||||||||||
Sbjct: 8523 tagacatcaaaagaaaaaac 8542
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>emb|AL136372.8| Human DNA sequence from clone RP11-134C1 on chromosome 1q25.1-31.1
             Contains a zinc finger protein pseudogene, complete
             sequence
          Length = 165880

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   aaaatatcacacatttacaa 199
             ||||||||||||||||||||
Sbjct: 82940 aaaatatcacacatttacaa 82921
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>emb|Y10601.1|HSRNAALP Homo sapiens mRNA for ankyrin-like protein
          Length = 5190

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 281  gtagacatcaaaagaaaaaa 300
            ||||||||||||||||||||
Sbjct: 4328 gtagacatcaaaagaaaaaa 4309
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>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete
              sequence
          Length = 149758

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 303    aaacagaaataacaaaattaacta 326
              |||||||||||||||| |||||||
Sbjct: 101685 aaacagaaataacaaatttaacta 101708
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>gb|AC090133.6| Homo sapiens chromosome 8, clone RP11-813L8, complete sequence
          Length = 201279

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    aaagaaaaaaccaaacagaa 310
              ||||||||||||||||||||
Sbjct: 168463 aaagaaaaaaccaaacagaa 168444
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>gb|AC123777.4| Homo sapiens chromosome 8, clone RP11-252C15, complete sequence
          Length = 175943

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    aaagaaaaaaccaaacagaa 310
              ||||||||||||||||||||
Sbjct: 111661 aaagaaaaaaccaaacagaa 111642
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>emb|BX284634.8| Mouse DNA sequence from clone RP23-92B18 on chromosome 11 Contains the
             3' end of the gene for a novel protein (C330012F17Rik,
             C130096N06Rik), the gene for a novel protein
             (2010316F05Rik), a novel gene, the Mtif2 gene for
             mitochondrial translational initiation factor 2, the
             Rps27a gene for ribosomal protein S27a, a ribosomal
             protein L7 (Rpl7) pseudogene, the gene for a novel protein
             (1700034F02Rik), a novel gene and a CpG island, complete
             sequence
          Length = 176038

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 291   aaagaaaaaaccaaacagaaataa 314
             ||||| ||||||||||||||||||
Sbjct: 44196 aaagagaaaaccaaacagaaataa 44173
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 97      tggctgcaacaatttgaataacat 120
               |||||||||||||||| |||||||
Sbjct: 1949048 tggctgcaacaatttgcataacat 1949025
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>emb|CR859616.1| Pongo pygmaeus mRNA; cDNA DKFZp468J165 (from clone DKFZp468J165)
          Length = 2880

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  agacatcaaaagaaaaaacc 302
            ||||||||||||||||||||
Sbjct: 1098 agacatcaaaagaaaaaacc 1117
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>gb|AC123900.2| Homo sapiens chromosome 3 clone RP11-640D6, complete sequence
          Length = 166485

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 124    gctgcaacaatttgaataacaaaa 147
              |||| |||||||||||||||||||
Sbjct: 120111 gctggaacaatttgaataacaaaa 120134
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>gb|AC044784.11| Homo sapiens chromosome 10 clone RP11-428L9, complete sequence
          Length = 179711

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 124   gctgcaacaatttgaataacaaaa 147
             |||| |||||||||||||||||||
Sbjct: 66555 gctggaacaatttgaataacaaaa 66578
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 97      tggctgcaacaatttgaataacat 120
               |||||||||||||||| |||||||
Sbjct: 2007017 tggctgcaacaatttgcataacat 2006994
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>gb|AC022867.10| Homo sapiens chromosome 8, clone RP11-367C12, complete sequence
          Length = 196931

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    gtagacatcaaaagaaaaaa 300
              ||||||||||||||||||||
Sbjct: 186011 gtagacatcaaaagaaaaaa 186030
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>gb|AY070748.1| Arabidopsis thaliana AT5g40730/MNF13_250 mRNA sequence
          Length = 383

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 catcaaaagaaaaaaccaaa 305
           ||||||||||||||||||||
Sbjct: 22  catcaaaagaaaaaaccaaa 41
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>gb|AC016057.6| Homo sapiens chromosome 8, clone RP11-383H13, complete sequence
          Length = 197785

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    gtagacatcaaaagaaaaaa 300
              ||||||||||||||||||||
Sbjct: 115320 gtagacatcaaaagaaaaaa 115339
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 97      tggctgcaacaatttgaataacat 120
               |||||||||||||||| |||||||
Sbjct: 1987416 tggctgcaacaatttgcataacat 1987393
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 97      tggctgcaacaatttgaataacat 120
               |||||||||||||||| |||||||
Sbjct: 1911822 tggctgcaacaatttgcataacat 1911799
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 97      tggctgcaacaatttgaataacat 120
               |||||||||||||||| |||||||
Sbjct: 2008062 tggctgcaacaatttgcataacat 2008039
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 303      aaacagaaataacaaaattaacta 326
                |||||||||||||||| |||||||
Sbjct: 16558557 aaacagaaataacaaatttaacta 16558534
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 309     aaataacaaaattaactaca 328
               ||||||||||||||||||||
Sbjct: 2061407 aaataacaaaattaactaca 2061388
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>emb|BX833524.1|CNS09Z9Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL60ZB03 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 417

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 catcaaaagaaaaaaccaaa 305
           ||||||||||||||||||||
Sbjct: 15  catcaaaagaaaaaaccaaa 34
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>emb|BX834072.1|CNS09Z1K Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL94ZA10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 408

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 catcaaaagaaaaaaccaaa 305
           ||||||||||||||||||||
Sbjct: 13  catcaaaagaaaaaaccaaa 32
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>emb|BX833879.1|CNS09Z5C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL81ZB11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 412

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 catcaaaagaaaaaaccaaa 305
           ||||||||||||||||||||
Sbjct: 5   catcaaaagaaaaaaccaaa 24
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>emb|BX833352.1|CNS09Z2W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL47ZC02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 419

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 catcaaaagaaaaaaccaaa 305
           ||||||||||||||||||||
Sbjct: 18  catcaaaagaaaaaaccaaa 37
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>emb|BX833320.1|CNS09Z2R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL44ZE11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 416

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 catcaaaagaaaaaaccaaa 305
           ||||||||||||||||||||
Sbjct: 15  catcaaaagaaaaaaccaaa 34
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>emb|BX832950.1|CNS09Z4D Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL25ZE12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 419

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 catcaaaagaaaaaaccaaa 305
           ||||||||||||||||||||
Sbjct: 18  catcaaaagaaaaaaccaaa 37
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>emb|BX832847.1|CNS09Z57 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL17ZD01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 421

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 catcaaaagaaaaaaccaaa 305
           ||||||||||||||||||||
Sbjct: 20  catcaaaagaaaaaaccaaa 39
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>gb|AC074030.17|AC074030 Homo sapiens 12 BAC RP11-425I22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163700

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   caaacagaaataacaaaatt 321
             ||||||||||||||||||||
Sbjct: 47077 caaacagaaataacaaaatt 47096
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>gb|AC016144.13|AC016144 Homo sapiens 12 BAC RP11-367O10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 178453

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   caaacagaaataacaaaatt 321
             ||||||||||||||||||||
Sbjct: 15642 caaacagaaataacaaaatt 15623
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 97      tggctgcaacaatttgaataacat 120
               |||||||||||||||| |||||||
Sbjct: 1969801 tggctgcaacaatttgcataacat 1969778
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 97      tggctgcaacaatttgaataacat 120
               |||||||||||||||| |||||||
Sbjct: 1929222 tggctgcaacaatttgcataacat 1929199
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>dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNF13
          Length = 85992

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   catcaaaagaaaaaaccaaa 305
             ||||||||||||||||||||
Sbjct: 75863 catcaaaagaaaaaaccaaa 75882
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>emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 in linkage group 24,
             complete sequence
          Length = 213091

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   aaaagaaaaaaccaaacaga 309
             ||||||||||||||||||||
Sbjct: 39458 aaaagaaaaaaccaaacaga 39439
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 97      tggctgcaacaatttgaataacat 120
               |||||||||||||||| |||||||
Sbjct: 2046732 tggctgcaacaatttgcataacat 2046709
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>dbj|AP003386.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-699F16, complete
             sequence
          Length = 72000

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   aaaagaaaaaaccaaacaga 309
             ||||||||||||||||||||
Sbjct: 19380 aaaagaaaaaaccaaacaga 19361
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 303      aaacagaaataacaaaattaacta 326
                |||||||||||||||| |||||||
Sbjct: 16566798 aaacagaaataacaaatttaacta 16566775
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>gb|BC050266.1| Mus musculus polyhomeotic-like 3 (Drosophila), mRNA (cDNA clone
            IMAGE:5362875)
          Length = 4888

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 132  aatttgaataacaaaacaca 151
            ||||||||||||||||||||
Sbjct: 1240 aatttgaataacaaaacaca 1221
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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 97      tggctgcaacaatttgaataacat 120
               |||||||||||||||| |||||||
Sbjct: 1933343 tggctgcaacaatttgcataacat 1933320
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>emb|AL671848.7| Mouse DNA sequence from clone RP23-110K5 on chromosome X, complete
             sequence
          Length = 190964

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   atcaaaagaaaaaaccaaac 306
             ||||||||||||||||||||
Sbjct: 68962 atcaaaagaaaaaaccaaac 68943
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>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08,
             complete sequence
          Length = 112268

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   aaataacaaaattaactaca 328
             ||||||||||||||||||||
Sbjct: 28248 aaataacaaaattaactaca 28229


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,408,335
Number of Sequences: 3902068
Number of extensions: 5408335
Number of successful extensions: 149995
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149365
Number of HSP's gapped (non-prelim): 630
length of query: 349
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 327
effective length of database: 17,147,199,772
effective search space: 5607134325444
effective search space used: 5607134325444
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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