Clone Name | rbastl09b02 |
---|---|
Clone Library Name | barley_pub |
>emb|X05167.1|HVLEU Barley gene for thiol protease aleurain Length = 5372 Score = 48.1 bits (24), Expect = 0.019 Identities = 24/24 (100%) Strand = Plus / Minus Query: 303 ggagcgcggcggcgtcccgcatga 326 |||||||||||||||||||||||| Sbjct: 2107 ggagcgcggcggcgtcccgcatga 2084
>emb|AL031000.1|HS795G23 Human DNA sequence from clone RP4-795G23 on chromosome Xq13.1-21.1 Contains the TBX22 gene for T-box 22, complete sequence Length = 132029 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Plus Query: 119 aaattagtgacaacaaatctacaaaa 144 |||||||||||||||||| ||||||| Sbjct: 26499 aaattagtgacaacaaatatacaaaa 26524
>emb|X58859.1|HVTHIOL Barley DNA with region homologous to thiol protease (aleurain) Length = 3333 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 303 ggagcgcggcggcgtcccgcat 324 |||||||||||||||||||||| Sbjct: 946 ggagcgcggcggcgtcccgcat 925
>gb|AC136475.7| Homo sapiens chromosome 11, clone RP11-326C3, complete sequence Length = 143779 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 agagcagagcaggggaaacag 76 ||||||||||||||||||||| Sbjct: 111920 agagcagagcaggggaaacag 111900
>gb|AC138230.5| Homo sapiens chromosome 11, clone RP13-317D12, complete sequence Length = 187160 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 agagcagagcaggggaaacag 76 ||||||||||||||||||||| Sbjct: 44612 agagcagagcaggggaaacag 44592
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 73 acagcaagcttgaaaaaacggggtt 97 |||| |||||||||||||||||||| Sbjct: 2283394 acagaaagcttgaaaaaacggggtt 2283418
>emb|AL591214.8| Human DNA sequence from clone RP11-18I23 on chromosome 9 Contains part of one variant of the ROR2 gene for receptor tyrosine kinase-like orphan receptor 2, complete sequence Length = 66959 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 agagcaggggaaacagcaag 80 |||||||||||||||||||| Sbjct: 18423 agagcaggggaaacagcaag 18442
>emb|AL356479.12| Human DNA sequence from clone RP11-48A6 on chromosome 1p21.3-22.3 Contains the 5' end of a novel gene, complete sequence Length = 128142 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 aaaaattagtgacaacaaat 136 |||||||||||||||||||| Sbjct: 49414 aaaaattagtgacaacaaat 49395
>gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152737 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 aaaaattagtgacaacaaat 136 |||||||||||||||||||| Sbjct: 53760 aaaaattagtgacaacaaat 53779
>gb|AC020912.6| Homo sapiens chromosome 19 clone CTD-2583G20, complete sequence Length = 163225 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 atctacaaaagaggctggct 154 |||||||||||||||||||| Sbjct: 12630 atctacaaaagaggctggct 12649
>emb|BX908803.7| Zebrafish DNA sequence from clone CH211-13C14 in linkage group 3, complete sequence Length = 186802 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 acaacaaatctacaaaagaggctg 151 ||||||||||||||||| |||||| Sbjct: 117509 acaacaaatctacaaaaaaggctg 117532
>gb|AC096538.2| Homo sapiens chromosome 1 clone RP11-146P11, complete sequence Length = 173048 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 aaaaattagtgacaacaaat 136 |||||||||||||||||||| Sbjct: 26196 aaaaattagtgacaacaaat 26177
>gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complete sequence Length = 183917 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 aaaaattagtgacaacaaat 136 |||||||||||||||||||| Sbjct: 76188 aaaaattagtgacaacaaat 76169
>gb|AC073578.17| Homo sapiens 12 BAC RP11-897M7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121698 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aaaattagtgacaacaaatc 137 |||||||||||||||||||| Sbjct: 100758 aaaattagtgacaacaaatc 100777
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 cgaggagcgcggcggcgtcccgca 323 |||||||||||||||| ||||||| Sbjct: 3024366 cgaggagcgcggcggcatcccgca 3024343
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 cgaggagcgcggcggcgtcc 319 |||||||||||||||||||| Sbjct: 2546687 cgaggagcgcggcggcgtcc 2546706
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 cgaggagcgcggcggcgtcc 319 |||||||||||||||||||| Sbjct: 2131803 cgaggagcgcggcggcgtcc 2131822 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,486,086 Number of Sequences: 3902068 Number of extensions: 2486086 Number of successful extensions: 46948 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46709 Number of HSP's gapped (non-prelim): 239 length of query: 348 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 326 effective length of database: 17,147,199,772 effective search space: 5589987125672 effective search space used: 5589987125672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)