ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl09b01 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/22 (81%), Positives = 19/22 (86%) Frame = -3 Query: 330 TSDHTGQAEGLTARGIPNSISI 265 TSDH G A GLTA+GIPNSISI Sbjct: 841 TSDHKGAAAGLTAKGIPNSISI 862
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/22 (81%), Positives = 20/22 (90%) Frame = -3 Query: 330 TSDHTGQAEGLTARGIPNSISI 265 TSD+ G AEG+TARGIPNSISI Sbjct: 842 TSDNKGAAEGITARGIPNSISI 863
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 36.6 bits (83), Expect = 0.016 Identities = 17/22 (77%), Positives = 19/22 (86%) Frame = -3 Query: 330 TSDHTGQAEGLTARGIPNSISI 265 TSD TG A G+TA+GIPNSISI Sbjct: 845 TSDVTGAAAGITAKGIPNSISI 866
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 35.0 bits (79), Expect = 0.047 Identities = 17/22 (77%), Positives = 18/22 (81%) Frame = -3 Query: 330 TSDHTGQAEGLTARGIPNSISI 265 TSD G A GL+ARGIPNSISI Sbjct: 849 TSDLKGDAAGLSARGIPNSISI 870
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 30.8 bits (68), Expect = 0.88 Identities = 14/19 (73%), Positives = 14/19 (73%) Frame = -3 Query: 321 HTGQAEGLTARGIPNSISI 265 H EGLT RGIPNSISI Sbjct: 846 HPSSKEGLTFRGIPNSISI 864
>TNR25_HUMAN (Q93038) Tumor necrosis factor receptor superfamily member 25| precursor (WSL-1 protein) (Apoptosis-mediating receptor DR3) (Apoptosis-mediating receptor TRAMP) (Death domain receptor 3) (WSL protein) (Apoptosis-inducing receptor AIR) (Apo-3) Length = 417 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = +3 Query: 243 GDGRAQIGWICCSGCP---WR*APRPVPCG 323 GD +IG CC GCP + AP PCG Sbjct: 37 GDFHKKIGLFCCRGCPAGHYLKAPCTEPCG 66
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/19 (68%), Positives = 14/19 (73%) Frame = -3 Query: 321 HTGQAEGLTARGIPNSISI 265 H EGLT +GIPNSISI Sbjct: 846 HRSSEEGLTFKGIPNSISI 864
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/15 (86%), Positives = 14/15 (93%) Frame = -3 Query: 309 AEGLTARGIPNSISI 265 +EGLT RGIPNSISI Sbjct: 851 SEGLTCRGIPNSISI 865
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/18 (77%), Positives = 15/18 (83%) Frame = -3 Query: 318 TGQAEGLTARGIPNSISI 265 T + EGLT RGIPNSISI Sbjct: 845 TCEDEGLTFRGIPNSISI 862
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -3 Query: 306 EGLTARGIPNSISI 265 EGLT RGIPNSISI Sbjct: 853 EGLTCRGIPNSISI 866
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 29.3 bits (64), Expect = 2.6 Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = -3 Query: 330 TSDHTGQ-AEGLTARGIPNSISI 265 TSD T + +GLTA GIPNSISI Sbjct: 855 TSDVTKEKGQGLTAMGIPNSISI 877
>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator (ARNT| protein) (Dioxin receptor, nuclear translocator) (Hypoxia-inducible factor 1 beta) (HIF-1 beta) Length = 800 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = -2 Query: 298 HRQGHPEQHIHPI*ARPSPRPHAF--VLSLL 212 HR EQH+ P A+PS +P F +LS+L Sbjct: 747 HRSSSNEQHVQPTSAQPSSQPEVFQEMLSML 777
>PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)| Length = 1004 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -1 Query: 329 PPTTRDRPRGSPPGASRTAYP 267 PP T RP GSPP A+R P Sbjct: 652 PPLTDSRPLGSPPNATRVLTP 672
>CB024_HUMAN (Q9BV87) Protein C2orf24| Length = 410 Score = 28.9 bits (63), Expect = 3.3 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = -3 Query: 276 SISIRSEHVRRRDLMLLCYPCLLTPELACVCVCDRELC-----RCMNN*GNKGACTTGLI 112 ++++ S V + L L C P P+L C E C +C+ + N +C G + Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGSM 303 Query: 111 GMRKL 97 G+R L Sbjct: 304 GLRSL 308
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -3 Query: 306 EGLTARGIPNSISI 265 EGLT RGIPNSISI Sbjct: 844 EGLTFRGIPNSISI 857
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -3 Query: 306 EGLTARGIPNSISI 265 EGLT RGIPNSISI Sbjct: 840 EGLTFRGIPNSISI 853
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -3 Query: 306 EGLTARGIPNSISI 265 EGLT RGIPNSISI Sbjct: 826 EGLTFRGIPNSISI 839
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -3 Query: 306 EGLTARGIPNSISI 265 EGLT RGIPNSISI Sbjct: 848 EGLTFRGIPNSISI 861
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -3 Query: 192 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 55 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756
>CB024_PONPY (Q5R4U5) Protein C2orf24 homolog| Length = 410 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Frame = -3 Query: 276 SISIRSEHVRRRDLMLLCYPCLLTPELACVCVCDRELC-----RCMNN*GNKGACTTGLI 112 ++++ S V + L L C P P+L C E C +C+ + N +C G Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGST 303 Query: 111 GMRKL 97 G+R L Sbjct: 304 GLRSL 308
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -3 Query: 192 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 55 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = -3 Query: 306 EGLTARGIPNSISI 265 EGLT +GIPNS+SI Sbjct: 846 EGLTGKGIPNSVSI 859
>PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II) (PLC-148) Length = 1290 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +3 Query: 3 PEGTSHHRLHYWAKQGIFSAHDDALTGSQLS*ASACRSDPSCTHPYC 143 PE ++ HYW I S+H+ LTG Q S S+ + C C Sbjct: 319 PETMNNPLSHYW----ISSSHNTYLTGDQFSSESSLEAYARCLRMGC 361
>PHF12_MOUSE (Q5SPL2) PHD finger protein 12 (PHD factor 1) (Pf1)| Length = 1003 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -1 Query: 329 PPTTRDRPRGSPPGASRTAYP 267 P +T RP GSPP A+R P Sbjct: 651 PSSTESRPLGSPPNATRVLTP 671
>EFE_PSEYS (Q9Z377) 2-oxoglutarate-dependent ethylene/succinate-forming enzyme| (EC 1.13.-.-) (EC 1.14.11.-) (Ethylene-forming enzyme) (EFE) Length = 350 Score = 27.3 bits (59), Expect = 9.7 Identities = 24/93 (25%), Positives = 28/93 (30%), Gaps = 7/93 (7%) Frame = +3 Query: 36 WAKQGIFSAHDDALTGSQLS*ASACRSDPSCTHPYCLNYSXXXXXXXXXXXXKLAPV*AS 215 W K GIF D+ + A A S C P S V A Sbjct: 30 WQKDGIFQIKTDSEQDRKTQEAMAA-SKQFCKEPLTFKSSCVSDLTYSGYVASGEEVTAG 88 Query: 216 KDS-------TKA*GLGDGRAQIGWICCSGCPW 293 K K +GD R + GW C PW Sbjct: 89 KPDFPEIFTVCKDLSVGDQRVKAGWPCHGPVPW 121
>EFE_PSESH (P32021) 2-oxoglutarate-dependent ethylene/succinate-forming enzyme| (EC 1.13.-.-) (EC 1.14.11.-) (Ethylene-forming enzyme) (EFE) Length = 350 Score = 27.3 bits (59), Expect = 9.7 Identities = 24/93 (25%), Positives = 28/93 (30%), Gaps = 7/93 (7%) Frame = +3 Query: 36 WAKQGIFSAHDDALTGSQLS*ASACRSDPSCTHPYCLNYSXXXXXXXXXXXXKLAPV*AS 215 W K GIF D+ + A A S C P S V A Sbjct: 30 WQKDGIFQIKTDSEQDRKTQEAMAA-SKQFCKEPLTFKSSCVSDLTYSGYVASGEEVTAG 88 Query: 216 KDS-------TKA*GLGDGRAQIGWICCSGCPW 293 K K +GD R + GW C PW Sbjct: 89 KPDFPEIFTVCKDLSVGDQRVKAGWPCHGPVPW 121
>EFE_PSESG (Q7BS32) 2-oxoglutarate-dependent ethylene/succinate-forming enzyme| (EC 1.13.-.-) (EC 1.14.11.-) (Ethylene-forming enzyme) (EFE) Length = 350 Score = 27.3 bits (59), Expect = 9.7 Identities = 24/93 (25%), Positives = 28/93 (30%), Gaps = 7/93 (7%) Frame = +3 Query: 36 WAKQGIFSAHDDALTGSQLS*ASACRSDPSCTHPYCLNYSXXXXXXXXXXXXKLAPV*AS 215 W K GIF D+ + A A S C P S V A Sbjct: 30 WQKDGIFQIKTDSEQDRKTQEAMAA-SKQFCKEPLTFKSSCVSDLTYSGYVASGEEVTAG 88 Query: 216 KDS-------TKA*GLGDGRAQIGWICCSGCPW 293 K K +GD R + GW C PW Sbjct: 89 KPDFPEIFTVCKDLSVGDQRVKAGWPCHGPVPW 121
>EFE_PSECA (Q7BS31) 2-oxoglutarate-dependent ethylene/succinate-forming enzyme| (EC 1.13.-.-) (EC 1.14.11.-) (Ethylene-forming enzyme) (EFE) Length = 350 Score = 27.3 bits (59), Expect = 9.7 Identities = 24/93 (25%), Positives = 28/93 (30%), Gaps = 7/93 (7%) Frame = +3 Query: 36 WAKQGIFSAHDDALTGSQLS*ASACRSDPSCTHPYCLNYSXXXXXXXXXXXXKLAPV*AS 215 W K GIF D+ + A A S C P S V A Sbjct: 30 WQKDGIFQIKTDSEQDRKTQEAMAA-SKQFCKEPLTFKSSCVSDLTYSGYVASGEEVTAG 88 Query: 216 KDS-------TKA*GLGDGRAQIGWICCSGCPW 293 K K +GD R + GW C PW Sbjct: 89 KPDFPEIFTVCKDLSVGDQRVKAGWPCHGPVPW 121
>PHLA1_MOUSE (Q62392) Pleckstrin homology-like domain family A member 1 (T-cell| death-associated gene 51 protein) (Proline- and glutamine-rich protein) (PQR protein) Length = 261 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/22 (50%), Positives = 11/22 (50%) Frame = -2 Query: 298 HRQGHPEQHIHPI*ARPSPRPH 233 H HP QH HP P P PH Sbjct: 211 HPYSHPHQHPHP---HPHPHPH 229
>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)| Length = 194 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 97 ELPHADQTRRARTLIALIIHAPAQLSV 177 ELP D TR +RTL L+ HAP + + Sbjct: 7 ELPAPDATRISRTLSYLLRHAPQTIGL 33
>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)| (Fragment) Length = 353 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/32 (34%), Positives = 13/32 (40%) Frame = -2 Query: 331 HLRPHGTGRGAHRQGHPEQHIHPI*ARPSPRP 236 H +PH H H H HP + SP P Sbjct: 147 HPQPHHQQNHPHHHSHSHLHAHPAHHQTSPHP 178
>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)| Length = 508 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/32 (34%), Positives = 13/32 (40%) Frame = -2 Query: 331 HLRPHGTGRGAHRQGHPEQHIHPI*ARPSPRP 236 H +PH H H H HP + SP P Sbjct: 302 HPQPHHQQNHPHHHSHSHLHAHPAHHQTSPHP 333
>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)| Length = 606 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/25 (48%), Positives = 12/25 (48%) Frame = -2 Query: 298 HRQGHPEQHIHPI*ARPSPRPHAFV 224 H Q HP H HP P PHA V Sbjct: 169 HPQSHPHPHPHP---HSHPHPHALV 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,826,622 Number of Sequences: 219361 Number of extensions: 1030612 Number of successful extensions: 3074 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2899 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3062 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
