Clone Name | rbastl09b01 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 270 bits (136), Expect = 3e-69 Identities = 149/153 (97%), Gaps = 4/153 (2%) Strand = Plus / Minus Query: 28 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 87 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837 Query: 88 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcaccc----ttattgc 143 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777 Query: 144 cttaattattcatgcaccggcacaactctctgt 176 ||||||||||||||||||||||||||||||||| Sbjct: 2776 cttaattattcatgcaccggcacaactctctgt 2744 Score = 246 bits (124), Expect = 4e-62 Identities = 136/140 (97%) Strand = Plus / Minus Query: 193 agctagctccggtgtaagcaagcaaggatagcacaaaagcatgaggtctcggcgacggac 252 ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668 Query: 253 gtgctcagatcggatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 312 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 2608 Query: 313 tcccgtgtggtcggaggtgt 332 |||||||||||||||||||| Sbjct: 2607 tcccgtgtggtcggaggtgt 2588
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 103 bits (52), Expect = 4e-19 Identities = 64/68 (94%) Strand = Plus / Minus Query: 265 gatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggtc 324 |||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 903 gatggagatgctgttggggatgcccctggccgtgagcccctcggcctggcccgtgtggtc 844 Query: 325 ggaggtgt 332 |||||||| Sbjct: 843 ggaggtgt 836 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 21 catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 70 ||||||||| ||||||||||||| |||||| |||||||| ||||||||| Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050 Score = 52.0 bits (26), Expect = 0.001 Identities = 42/46 (91%), Gaps = 1/46 (2%) Strand = Plus / Minus Query: 103 ccgcatgccgatcagacccgtcgtgcacgcac-ccttattgcctta 147 ||||||||||||| |||||||||||||| ||| | ||||||||||| Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 265 gatggatatgctgttcgggatgcccctggcggtgagccc 303 |||||| |||||||| ||||||||| ||||||||||||| Sbjct: 2443 gatggagatgctgttggggatgcccatggcggtgagccc 2405
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 265 gatggatatgctgttcgggatgcccctggcggtgagccc 303 |||||| |||||||| ||||||||| ||||||||||||| Sbjct: 2922 gatggagatgctgttggggatgcccatggcggtgagccc 2884
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 265 gatggatatgctgttcgggatgcccctggcggtgagccc 303 |||||| |||||||| ||||||||| ||||||||||||| Sbjct: 65813 gatggagatgctgttggggatgcccatggcggtgagccc 65775
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 265 gatggatatgctgttcgggatgcccctggcggtgagccc 303 |||||| |||||||| ||||||||| ||||||||||||| Sbjct: 27821683 gatggagatgctgttggggatgcccatggcggtgagccc 27821645 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 259 agatcggatggatatgctgttcgggatgcccctggcgg 296 ||||| |||||| |||||||| |||||||||||||||| Sbjct: 30026452 agatcagatggagatgctgttggggatgcccctggcgg 30026415
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 265 gatggatatgctgttcgggatgcccctggcggtgagccc 303 |||||| |||||||| ||||||||| ||||||||||||| Sbjct: 2916 gatggagatgctgttggggatgcccatggcggtgagccc 2878
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 265 gatggatatgctgttcgggatgcccctggcggtgagccc 303 |||||| |||||||| ||||||||| ||||||||||||| Sbjct: 27913007 gatggagatgctgttggggatgcccatggcggtgagccc 27912969 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 259 agatcggatggatatgctgttcgggatgcccctggcgg 296 ||||| |||||| |||||||| |||||||||||||||| Sbjct: 30117874 agatcagatggagatgctgttggggatgcccctggcgg 30117837
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full insert sequence Length = 1560 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 265 gatggatatgctgttcgggatgcccctggcggtgagccc 303 |||||| |||||||| ||||||||| ||||||||||||| Sbjct: 1329 gatggagatgctgttggggatgcccatggcggtgagccc 1291
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 265 gatggatatgctgttcgggatgcccctggcggtgagccc 303 |||||| |||||||| ||||||||| ||||||||||||| Sbjct: 2594 gatggagatgctgttggggatgcccatggcggtgagccc 2556
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 265 gatggatatgctgttcgggatgcccctggcggtgagccc 303 |||||| |||||||| ||||||||| ||||||||||||| Sbjct: 2924 gatggagatgctgttggggatgcccatggcggtgagccc 2886
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full insert sequence Length = 1726 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 265 gatggatatgctgttcgggatgcccctggcggtgagccc 303 |||||| |||||||| ||||||||| ||||||||||||| Sbjct: 1494 gatggagatgctgttggggatgcccatggcggtgagccc 1456
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds Length = 3003 Score = 54.0 bits (27), Expect = 3e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 254 tgctcagatcggatggatatgctgttcgggatgcccctggcggtgagcccc 304 ||||||| || |||||| | |||||| ||||||||| |||||||||||||| Sbjct: 2772 tgctcagctcagatggagacgctgttggggatgcccatggcggtgagcccc 2722
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 259 agatcggatggatatgctgttcgggatgcccctggcgg 296 ||||| |||||| |||||||| |||||||||||||||| Sbjct: 2698 agatcagatggagatgctgttggggatgcccctggcgg 2661
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 259 agatcggatggatatgctgttcgggatgcccctggcgg 296 ||||| |||||| |||||||| |||||||||||||||| Sbjct: 81299 agatcagatggagatgctgttggggatgcccctggcgg 81336
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 259 agatcggatggatatgctgttcgggatgcccctggcgg 296 ||||| |||||| |||||||| |||||||||||||||| Sbjct: 2731 agatcagatggagatgctgttggggatgcccctggcgg 2694
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 48.1 bits (24), Expect = 0.018 Identities = 30/32 (93%) Strand = Plus / Minus Query: 265 gatggatatgctgttcgggatgcccctggcgg 296 |||||| |||||||| |||||||||||||||| Sbjct: 2610 gatggagatgctgttggggatgcccctggcgg 2579
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12, complete sequence Length = 155402 Score = 46.1 bits (23), Expect = 0.071 Identities = 23/23 (100%) Strand = Plus / Plus Query: 135 ccttattgccttaattattcatg 157 ||||||||||||||||||||||| Sbjct: 136193 ccttattgccttaattattcatg 136215 Score = 46.1 bits (23), Expect = 0.071 Identities = 23/23 (100%) Strand = Plus / Plus Query: 135 ccttattgccttaattattcatg 157 ||||||||||||||||||||||| Sbjct: 94214 ccttattgccttaattattcatg 94236
>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA sequence Length = 1020 Score = 46.1 bits (23), Expect = 0.071 Identities = 35/39 (89%) Strand = Plus / Minus Query: 265 gatggatatgctgttcgggatgcccctggcggtgagccc 303 |||||| |||||||| ||||||||| | ||||||||||| Sbjct: 750 gatggagatgctgttggggatgcccttagcggtgagccc 712
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.071 Identities = 23/23 (100%) Strand = Plus / Plus Query: 135 ccttattgccttaattattcatg 157 ||||||||||||||||||||||| Sbjct: 21745017 ccttattgccttaattattcatg 21745039 Score = 46.1 bits (23), Expect = 0.071 Identities = 23/23 (100%) Strand = Plus / Plus Query: 135 ccttattgccttaattattcatg 157 ||||||||||||||||||||||| Sbjct: 21703038 ccttattgccttaattattcatg 21703060
>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence Length = 568 Score = 44.1 bits (22), Expect = 0.28 Identities = 37/42 (88%) Strand = Plus / Minus Query: 266 atggatatgctgttcgggatgcccctggcggtgagcccctcg 307 ||||| |||||||| || |||||| |||| |||||||||||| Sbjct: 363 atggagatgctgttgggaatgcccatggcagtgagcccctcg 322
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 44.1 bits (22), Expect = 0.28 Identities = 40/46 (86%) Strand = Plus / Minus Query: 266 atggatatgctgttcgggatgcccctggcggtgagcccctcggcct 311 ||||| |||||||| || |||||| |||| || ||||||||||||| Sbjct: 2896 atggagatgctgttgggaatgcccatggcagtaagcccctcggcct 2851
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence Length = 37711 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 aaacaagggattttttctgca 62 ||||||||||||||||||||| Sbjct: 32565 aaacaagggattttttctgca 32585
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24, complete sequence Length = 155584 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 gcaaaacaagggattttttct 59 ||||||||||||||||||||| Sbjct: 39634 gcaaaacaagggattttttct 39614
>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin (LOC579890), mRNA Length = 1542 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ggagggaacatcacaccatc 24 |||||||||||||||||||| Sbjct: 1457 ggagggaacatcacaccatc 1438 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,862,111 Number of Sequences: 3902068 Number of extensions: 1862111 Number of successful extensions: 35564 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35460 Number of HSP's gapped (non-prelim): 103 length of query: 332 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 310 effective length of database: 17,147,199,772 effective search space: 5315631929320 effective search space used: 5315631929320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)