ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 270 3e-69
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 103 4e-19
3ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-04
4ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-04
5gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 54 3e-04
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 3e-04
7gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual posit... 54 3e-04
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
9dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
10dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
11dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
12dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
13gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, co... 54 3e-04
14emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 52 0.001
15gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 52 0.001
16dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
17ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.018
18gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.071
19gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full... 46 0.071
20dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.071
21gb|AY111869.1| Zea mays CL452_-8 mRNA sequence 44 0.28
22gb|AY103567.1| Zea mays PCO116252 mRNA sequence 44 0.28
23emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 1.1
24emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 1.1
25ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.4

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  270 bits (136), Expect = 3e-69
 Identities = 149/153 (97%), Gaps = 4/153 (2%)
 Strand = Plus / Minus

                                                                        
Query: 28   ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 87
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 88   agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcaccc----ttattgc 143
            |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                             
Query: 144  cttaattattcatgcaccggcacaactctctgt 176
            |||||||||||||||||||||||||||||||||
Sbjct: 2776 cttaattattcatgcaccggcacaactctctgt 2744



 Score =  246 bits (124), Expect = 4e-62
 Identities = 136/140 (97%)
 Strand = Plus / Minus

                                                                        
Query: 193  agctagctccggtgtaagcaagcaaggatagcacaaaagcatgaggtctcggcgacggac 252
            ||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||
Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668

                                                                        
Query: 253  gtgctcagatcggatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 312
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 2608

                                
Query: 313  tcccgtgtggtcggaggtgt 332
            ||||||||||||||||||||
Sbjct: 2607 tcccgtgtggtcggaggtgt 2588



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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA
           sequence
          Length = 1129

 Score =  103 bits (52), Expect = 4e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                       
Query: 265 gatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggtc 324
           |||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 903 gatggagatgctgttggggatgcccctggccgtgagcccctcggcctggcccgtgtggtc 844

                   
Query: 325 ggaggtgt 332
           ||||||||
Sbjct: 843 ggaggtgt 836



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 21   catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 70
            ||||||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 42/46 (91%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 103  ccgcatgccgatcagacccgtcgtgcacgcac-ccttattgcctta 147
            ||||||||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000



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>ref|XM_469412.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2686

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 265  gatggatatgctgttcgggatgcccctggcggtgagccc 303
            |||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2443 gatggagatgctgttggggatgcccatggcggtgagccc 2405



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>ref|XM_469411.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3165

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 265  gatggatatgctgttcgggatgcccctggcggtgagccc 303
            |||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2922 gatggagatgctgttggggatgcccatggcggtgagccc 2884



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>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                    
Query: 265   gatggatatgctgttcgggatgcccctggcggtgagccc 303
             |||||| |||||||| ||||||||| |||||||||||||
Sbjct: 65813 gatggagatgctgttggggatgcccatggcggtgagccc 65775



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                       
Query: 265      gatggatatgctgttcgggatgcccctggcggtgagccc 303
                |||||| |||||||| ||||||||| |||||||||||||
Sbjct: 27821683 gatggagatgctgttggggatgcccatggcggtgagccc 27821645



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 259      agatcggatggatatgctgttcgggatgcccctggcgg 296
                ||||| |||||| |||||||| ||||||||||||||||
Sbjct: 30026452 agatcagatggagatgctgttggggatgcccctggcgg 30026415



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>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity
            lipoxygenase mRNA, complete cds
          Length = 3154

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 265  gatggatatgctgttcgggatgcccctggcggtgagccc 303
            |||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2916 gatggagatgctgttggggatgcccatggcggtgagccc 2878



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                       
Query: 265      gatggatatgctgttcgggatgcccctggcggtgagccc 303
                |||||| |||||||| ||||||||| |||||||||||||
Sbjct: 27913007 gatggagatgctgttggggatgcccatggcggtgagccc 27912969



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 259      agatcggatggatatgctgttcgggatgcccctggcgg 296
                ||||| |||||| |||||||| ||||||||||||||||
Sbjct: 30117874 agatcagatggagatgctgttggggatgcccctggcgg 30117837



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>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full
            insert sequence
          Length = 1560

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 265  gatggatatgctgttcgggatgcccctggcggtgagccc 303
            |||||| |||||||| ||||||||| |||||||||||||
Sbjct: 1329 gatggagatgctgttggggatgcccatggcggtgagccc 1291



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>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full
            insert sequence
          Length = 2851

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 265  gatggatatgctgttcgggatgcccctggcggtgagccc 303
            |||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2594 gatggagatgctgttggggatgcccatggcggtgagccc 2556



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>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full
            insert sequence
          Length = 3167

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 265  gatggatatgctgttcgggatgcccctggcggtgagccc 303
            |||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2924 gatggagatgctgttggggatgcccatggcggtgagccc 2886



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>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full
            insert sequence
          Length = 1726

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 265  gatggatatgctgttcgggatgcccctggcggtgagccc 303
            |||||| |||||||| ||||||||| |||||||||||||
Sbjct: 1494 gatggagatgctgttggggatgcccatggcggtgagccc 1456



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>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds
          Length = 3003

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 254  tgctcagatcggatggatatgctgttcgggatgcccctggcggtgagcccc 304
            ||||||| || |||||| | |||||| ||||||||| ||||||||||||||
Sbjct: 2772 tgctcagctcagatggagacgctgttggggatgcccatggcggtgagcccc 2722



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>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 259  agatcggatggatatgctgttcgggatgcccctggcgg 296
            ||||| |||||| |||||||| ||||||||||||||||
Sbjct: 2698 agatcagatggagatgctgttggggatgcccctggcgg 2661



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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 259   agatcggatggatatgctgttcgggatgcccctggcgg 296
             ||||| |||||| |||||||| ||||||||||||||||
Sbjct: 81299 agatcagatggagatgctgttggggatgcccctggcgg 81336



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>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
            insert sequence
          Length = 2928

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 259  agatcggatggatatgctgttcgggatgcccctggcgg 296
            ||||| |||||| |||||||| ||||||||||||||||
Sbjct: 2731 agatcagatggagatgctgttggggatgcccctggcgg 2694



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>ref|XM_469655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2613

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 265  gatggatatgctgttcgggatgcccctggcgg 296
            |||||| |||||||| ||||||||||||||||
Sbjct: 2610 gatggagatgctgttggggatgcccctggcgg 2579



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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 135    ccttattgccttaattattcatg 157
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 135   ccttattgccttaattattcatg 157
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236



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>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA
           sequence
          Length = 1020

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 265 gatggatatgctgttcgggatgcccctggcggtgagccc 303
           |||||| |||||||| ||||||||| | |||||||||||
Sbjct: 750 gatggagatgctgttggggatgcccttagcggtgagccc 712



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 135      ccttattgccttaattattcatg 157
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 135      ccttattgccttaattattcatg 157
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060



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>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence
          Length = 568

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 266 atggatatgctgttcgggatgcccctggcggtgagcccctcg 307
           ||||| |||||||| || |||||| |||| ||||||||||||
Sbjct: 363 atggagatgctgttgggaatgcccatggcagtgagcccctcg 322



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>gb|AY103567.1| Zea mays PCO116252 mRNA sequence
          Length = 3135

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 266  atggatatgctgttcgggatgcccctggcggtgagcccctcggcct 311
            ||||| |||||||| || |||||| |||| || |||||||||||||
Sbjct: 2896 atggagatgctgttgggaatgcccatggcagtaagcccctcggcct 2851



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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 42    aaacaagggattttttctgca 62
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585



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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    gcaaaacaagggattttttct 59
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614



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>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin
            (LOC579890), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 5    ggagggaacatcacaccatc 24
            ||||||||||||||||||||
Sbjct: 1457 ggagggaacatcacaccatc 1438


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,862,111
Number of Sequences: 3902068
Number of extensions: 1862111
Number of successful extensions: 35564
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35460
Number of HSP's gapped (non-prelim): 103
length of query: 332
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 310
effective length of database: 17,147,199,772
effective search space: 5315631929320
effective search space used: 5315631929320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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