ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl09a12 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement Length = 13271 Score = 319 bits (161), Expect = 4e-84 Identities = 188/197 (95%) Strand = Plus / Minus Query: 1 actgaaaagaagagagatatatattgaattggcttacactcgccacaagctacatcagag 60 |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10579 actgaaaagatgagatatatatattgaattggcttacactcgccacaagctacatcagag 10520 Query: 61 tcaccttagaacattacataaacatcaagagtaagagcagggtccgtctgcggacgaaaa 120 |||| | | |||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 10519 tcacatcaatacattacataaacatcaagagtaagagcagggtccgactacggacgaaaa 10460 Query: 121 caaacgacaaaagaataacgacgtccatccttgctatcccaggctgccggcctggaaccc 180 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10459 caaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaaccc 10400 Query: 181 atcctagatcgatgaag 197 ||||||||||||||||| Sbjct: 10399 atcctagatcgatgaag 10383 Score = 256 bits (129), Expect = 5e-65 Identities = 156/165 (94%) Strand = Plus / Minus Query: 219 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 278 ||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| Sbjct: 10367 caactccaaatgaacaatcaatgcgctcgtgtcaaataacctttacatgtacctgcaact 10308 Query: 279 ggtgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaa 338 |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 10307 ggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaaaggtatcaa 10248 Query: 339 gactagcaaagcttaatgggtaaggtatggttaagtggtgaggtt 383 ||||||||||||||||||||| ||| ||||||| ||||||||||| Sbjct: 10247 gactagcaaagcttaatgggtgaggcatggttaggtggtgaggtt 10203
>dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-like retroelement BARE-1, gypsy-type retrotransposon BARE-100 DNA, solo-LTR sequence Length = 3130 Score = 319 bits (161), Expect = 4e-84 Identities = 188/197 (95%) Strand = Plus / Minus Query: 1 actgaaaagaagagagatatatattgaattggcttacactcgccacaagctacatcagag 60 |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3022 actgaaaagatgagatatatatattgaattggcttacactcgccacaagctacatcagag 2963 Query: 61 tcaccttagaacattacataaacatcaagagtaagagcagggtccgtctgcggacgaaaa 120 |||| | | |||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 2962 tcacatcaatacattacataaacatcaagagtaagagcagggtccgactacggacgaaaa 2903 Query: 121 caaacgacaaaagaataacgacgtccatccttgctatcccaggctgccggcctggaaccc 180 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2902 caaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaaccc 2843 Query: 181 atcctagatcgatgaag 197 ||||||||||||||||| Sbjct: 2842 atcctagatcgatgaag 2826 Score = 256 bits (129), Expect = 5e-65 Identities = 156/165 (94%) Strand = Plus / Minus Query: 219 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 278 ||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| Sbjct: 2810 caactccaaatgaacaatcaatgcgctcgtgtcaaataacctttacatgtacctgcaact 2751 Query: 279 ggtgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaa 338 |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 2750 ggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaaaggtatcaa 2691 Query: 339 gactagcaaagcttaatgggtaaggtatggttaagtggtgaggtt 383 ||||||||||||||||||||| ||| ||||||| ||||||||||| Sbjct: 2690 gactagcaaagcttaatgggtgaggcatggttaggtggtgaggtt 2646
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 297 bits (150), Expect = 1e-77 Identities = 186/197 (94%), Gaps = 2/197 (1%) Strand = Plus / Plus Query: 1 actgaaaagaagagagatatatattgaattggcttacactcgccacaagctacatcagag 60 ||||||||||||||| |||||| || |||||||||||||||||||||||||||||||| Sbjct: 64823 actgaaaagaagaga--tatataaagagttggcttacactcgccacaagctacatcagag 64880 Query: 61 tcaccttagaacattacataaacatcaagagtaagagcagggtccgtctgcggacgaaaa 120 |||| | || ||||||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct: 64881 tcacatcagtacattacataatcatcaagagtaagagcagggtccgtctacggacgaaaa 64940 Query: 121 caaacgacaaaagaataacgacgtccatccttgctatcccaggctgccggcctggaaccc 180 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 64941 caaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctggaaccc 65000 Query: 181 atcctagatcgatgaag 197 ||||||||||||||||| Sbjct: 65001 atcctagatcgatgaag 65017 Score = 256 bits (129), Expect = 5e-65 Identities = 156/165 (94%) Strand = Plus / Plus Query: 219 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 278 |||||||||||||||||||||| |||||||||||| ||| ||| ||||||||||||||| Sbjct: 65036 caactccaaatgaacaatcaacacgctcgcatcaagtaatcttagcctgtacctgcaact 65095 Query: 279 ggtgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaa 338 |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 65096 ggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaaaggtatcaa 65155 Query: 339 gactagcaaagcttaatgggtaaggtatggttaagtggtgaggtt 383 ||||||||||||||||||||| |||||||||||| |||||||||| Sbjct: 65156 gactagcaaagcttaatgggtgaggtatggttaaatggtgaggtt 65200
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 295 bits (149), Expect = 5e-77 Identities = 161/165 (97%) Strand = Plus / Minus Query: 219 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 278 |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| Sbjct: 326973 caactccaaatgaacaatcaacacgctcgcatcaagtaacctttacctgtacctgcaact 326914 Query: 279 ggtgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaa 338 |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 326913 ggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaaaggtatcaa 326854 Query: 339 gactagcaaagcttaatgggtaaggtatggttaagtggtgaggtt 383 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326853 gactagcaaagcttaatgggtaaggtatggttaagtggtgaggtt 326809 Score = 280 bits (141), Expect = 3e-72 Identities = 171/181 (94%) Strand = Plus / Minus Query: 15 agatatatattgaattggcttacactcgccacaagctacatcagagtcaccttagaacat 74 |||||||||| || |||||||||||||||||||||||||||||||||||| | || |||| Sbjct: 327171 agatatatatagagttggcttacactcgccacaagctacatcagagtcacatcagtacat 327112 Query: 75 tacataaacatcaagagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaaga 134 ||||||| |||||||||||||||||||||||| || ||||||||||||||||| |||||| Sbjct: 327111 tacataatcatcaagagtaagagcagggtccgactacggacgaaaacaaacgagaaaaga 327052 Query: 135 ataacgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatg 194 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327051 agaacgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatg 326992 Query: 195 a 195 | Sbjct: 326991 a 326991 Score = 256 bits (129), Expect = 5e-65 Identities = 182/198 (91%), Gaps = 5/198 (2%) Strand = Plus / Minus Query: 1 actgaaaagaagagagatatatattgaattggcttacactcgccacaagctacatcagag 60 ||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| Sbjct: 131580 actgaaaagaagagatatatata--gagttggcttacactcgccacaagctacatcagag 131523 Query: 61 tcaccttagaacattacataaacatcaagagtaagagcagggtccgtctgcggacgaaaa 120 |||| | || ||||||||| |||||||||||||||||||||||| || |||| ||||| Sbjct: 131522 tcacatcagtacattacat---catcaagagtaagagcagggtccgactacggaagaaaa 131466 Query: 121 caaacgacaaaagaataacgacgtccatccttgctatcccaggctgccggcctggaaccc 180 ||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 131465 caaacgagaaaagaagaacgacgtccatccttgctatcccaggctgccgccctggaaccc 131406 Query: 181 atcctagatcgatgaagg 198 |||||||||||||||||| Sbjct: 131405 atcctagatcgatgaagg 131388 Score = 256 bits (129), Expect = 5e-65 Identities = 156/165 (94%) Strand = Plus / Minus Query: 219 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 278 |||||||||||||||||||||||||||| | |||| | |||||||| ||||||||||||| Sbjct: 131376 caactccaaatgaacaatcaacgcgctcacgtcaagtgacctttacatgtacctgcaact 131317 Query: 279 ggtgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaa 338 |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 131316 ggtgttgtagtaatctgtgagccacaggtgactcagcaatctcatttccaaaggtatcaa 131257 Query: 339 gactagcaaagcttaatgggtaaggtatggttaagtggtgaggtt 383 ||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 131256 gactagcaaagcttaatgggtgaggcatggttaagtggtgaggtt 131212 Score = 131 bits (66), Expect = 2e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 294 tgtgagccacacgagactcagcaatctcatttccaaaggtatcaagactagcaaagctta 353 ||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 178659 tgtgagccacaggggactcagcaatctcatttcgaaaggtatcaagactagcaaagctta 178600 Query: 354 atgggtaaggtatggttaagtggtgaggtt 383 |||||| ||| || |||||||||||||||| Sbjct: 178599 atgggtgaggcatagttaagtggtgaggtt 178570
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 287 bits (145), Expect = 1e-74 Identities = 160/165 (96%) Strand = Plus / Plus Query: 219 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 278 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 16563 caactccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 16622 Query: 279 ggtgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaa 338 |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 16623 ggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaaaggtatcaa 16682 Query: 339 gactagcaaagcttaatgggtaaggtatggttaagtggtgaggtt 383 ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 16683 gactagcaaagcttaatgggtgaggtatggttaagtggtgaggtt 16727 Score = 262 bits (132), Expect = 7e-67 Identities = 171/184 (92%) Strand = Plus / Plus Query: 14 gagatatatattgaattggcttacactcgccacaagctacatcagagtcaccttagaaca 73 |||||||||| || ||||||||||||||||| |||||||||||||||| | | || ||| Sbjct: 16364 gagatatataaagagttggcttacactcgccaaaagctacatcagagtcgcttcagtaca 16423 Query: 74 ttacataaacatcaagagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaag 133 |||||||||||| |||||||||||||||||||| || | ||||||||||||||||||||| Sbjct: 16424 ttacataaacatgaagagtaagagcagggtccgactacagacgaaaacaaacgacaaaag 16483 Query: 134 aataacgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 193 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16484 aagaacgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 16543 Query: 194 gaag 197 |||| Sbjct: 16544 gaag 16547
>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal repeat, complete sequence Length = 7575 Score = 287 bits (145), Expect = 1e-74 Identities = 184/197 (93%) Strand = Plus / Minus Query: 1 actgaaaagaagagagatatatattgaattggcttacactcgccacaagctacatcagag 60 ||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| Sbjct: 4219 actgaaaagaagagatatatatacagagttggcttacactcgccacaagctacatcagag 4160 Query: 61 tcaccttagaacattacataaacatcaagagtaagagcagggtccgtctgcggacgaaaa 120 |||| | || ||||||||| | |||||||||||||||||||||||| || |||||||||| Sbjct: 4159 tcacatcagtacattacatcatcatcaagagtaagagcagggtccgactacggacgaaaa 4100 Query: 121 caaacgacaaaagaataacgacgtccatccttgctatcccaggctgccggcctggaaccc 180 ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 4099 caaacgacaaaagaagaacgacatccatccttgctatcccaggctgccggcctggaaccc 4040 Query: 181 atcctagatcgatgaag 197 ||||||||||||||||| Sbjct: 4039 atcctagatcgatgaag 4023 Score = 272 bits (137), Expect = 8e-70 Identities = 158/165 (95%) Strand = Plus / Minus Query: 219 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 278 |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 4007 caactccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 3948 Query: 279 ggtgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaa 338 |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| Sbjct: 3947 ggtgttgtagtaatctgtgagccataggggactcagcaatctcatttccaaaggtatcaa 3888 Query: 339 gactagcaaagcttaatgggtaaggtatggttaagtggtgaggtt 383 |||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 3887 gactagcaaagcttaatgggtaaggtatggttaagtcgtgaggtt 3843
>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial and complete sequences Length = 11820 Score = 287 bits (145), Expect = 1e-74 Identities = 184/197 (93%) Strand = Plus / Minus Query: 1 actgaaaagaagagagatatatattgaattggcttacactcgccacaagctacatcagag 60 ||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| Sbjct: 4219 actgaaaagaagagatatatatacagagttggcttacactcgccacaagctacatcagag 4160 Query: 61 tcaccttagaacattacataaacatcaagagtaagagcagggtccgtctgcggacgaaaa 120 |||| | || ||||||||| | |||||||||||||||||||||||| || |||||||||| Sbjct: 4159 tcacatcagtacattacatcatcatcaagagtaagagcagggtccgactacggacgaaaa 4100 Query: 121 caaacgacaaaagaataacgacgtccatccttgctatcccaggctgccggcctggaaccc 180 ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 4099 caaacgacaaaagaagaacgacatccatccttgctatcccaggctgccggcctggaaccc 4040 Query: 181 atcctagatcgatgaag 197 ||||||||||||||||| Sbjct: 4039 atcctagatcgatgaag 4023 Score = 272 bits (137), Expect = 8e-70 Identities = 158/165 (95%) Strand = Plus / Minus Query: 219 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 278 |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 4007 caactccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 3948 Query: 279 ggtgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaa 338 |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| Sbjct: 3947 ggtgttgtagtaatctgtgagccataggggactcagcaatctcatttccaaaggtatcaa 3888 Query: 339 gactagcaaagcttaatgggtaaggtatggttaagtggtgaggtt 383 |||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 3887 gactagcaaagcttaatgggtaaggtatggttaagtcgtgaggtt 3843 Score = 266 bits (134), Expect = 5e-68 Identities = 159/166 (95%), Gaps = 1/166 (0%) Strand = Plus / Minus Query: 219 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 278 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 11547 caactccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 11488 Query: 279 ggtgttgtagtaatctgtgagccaca-cgagactcagcaatctcatttccaaaggtatca 337 |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct: 11487 ggtgttgtagtaatctgtgagccacagggggactcagcaatctcatttccaaaggtatca 11428 Query: 338 agactagcaaagcttaatgggtaaggtatggttaagtggtgaggtt 383 |||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 11427 agactagcaaagcttaatgggtgaggcatggttaagtggtgaggtt 11382 Score = 250 bits (126), Expect = 3e-63 Identities = 182/198 (91%), Gaps = 2/198 (1%) Strand = Plus / Minus Query: 1 actgaaaagaagagagatatatattgaattggcttacactcgccacaagctacatcagag 60 ||||||||||||||| ||||| | || ||||||||||||||||||||| |||||||||| Sbjct: 11756 actgaaaagaagagatatatagaa-gagttggcttacactcgccacaagttacatcagag 11698 Query: 61 tcaccttagaacattacataaacatcaagagtaagagcagggtccgtctgcggacgaaaa 120 |||| | || ||||||||||| |||||||||||||||||||||||| || |||||||||| Sbjct: 11697 tcacatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaa 11638 Query: 121 caaacga-caaaagaataacgacgtccatccttgctatcccaggctgccggcctggaacc 179 ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11637 caaacgagaaaaataagaacgacgtccatccttgctatcccaggctgccggcctggaacc 11578 Query: 180 catcctagatcgatgaag 197 |||||||||||||||||| Sbjct: 11577 catcctagatcgatgaag 11560
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 276 bits (139), Expect = 5e-71 Identities = 160/167 (95%) Strand = Plus / Plus Query: 29 ttggcttacactcgccacaagctacatcagagtcaccttagaacattacataaacatcaa 88 |||||||||||||||||||||||||||||||||||| | || ||||||||||| |||||| Sbjct: 102781 ttggcttacactcgccacaagctacatcagagtcacatcagtacattacataatcatcaa 102840 Query: 89 gagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccat 148 |||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| Sbjct: 102841 gagtaagagcagggtccgactacggacgaaaacaaacgacaaaagaagaacgacgtccat 102900 Query: 149 ccttgctatcccaggctgccggcctggaacccatcctagatcgatga 195 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102901 ccttgctatcccaggctgccggcctggaacccatcctagatcgatga 102947 Score = 264 bits (133), Expect = 2e-67 Identities = 157/165 (95%) Strand = Plus / Plus Query: 219 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 278 ||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 102965 caacttcaaatgaacaatcaacgcgctcacgtcaaataacctttacctgtacctgcaact 103024 Query: 279 ggtgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaa 338 ||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 103025 ggtgttgtagtaatcggtgagccacaggggactcagcaatctcatttccaaaggtatcaa 103084 Query: 339 gactagcaaagcttaatgggtaaggtatggttaagtggtgaggtt 383 ||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 103085 gactagcaaagcttaatgggtgaggcatggttaagtggtgaggtt 103129
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 274 bits (138), Expect = 2e-70 Identities = 183/197 (92%), Gaps = 2/197 (1%) Strand = Plus / Minus Query: 1 actgaaaagaagagagatatatattgaattggcttacactcgccacaagctacatcagag 60 ||||||||||||||| ||||| | || |||||||||||||||||||||||||||||||| Sbjct: 11096 actgaaaagaagagatatataaa--gagttggcttacactcgccacaagctacatcagag 11039 Query: 61 tcaccttagaacattacataaacatcaagagtaagagcagggtccgtctgcggacgaaaa 120 |||| | || ||||||||||| |||||||||||||||||||||||| || |||||||||| Sbjct: 11038 tcacatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaa 10979 Query: 121 caaacgacaaaagaataacgacgtccatccttgctatcccaggctgccggcctggaaccc 180 ||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 10978 caaacgacaaaagaagaacgacgtccatccttgctatccgagggtgccggcctggaaccc 10919 Query: 181 atcctagatcgatgaag 197 ||||||||||||||||| Sbjct: 10918 atcctagatcgatgaag 10902 Score = 232 bits (117), Expect = 7e-58 Identities = 153/165 (92%) Strand = Plus / Minus Query: 219 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 278 |||||||||||||||||||||||||||| | | || || | ||||||||||||||||||| Sbjct: 10886 caactccaaatgaacaatcaacgcgctcacgtgaagtaccatttacctgtacctgcaact 10827 Query: 279 ggtgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaa 338 |||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| Sbjct: 10826 ggtgttgtagtaatctgtgagccacaggggactcaacaatctcatttccaaaggtatcaa 10767 Query: 339 gactagcaaagcttaatgggtaaggtatggttaagtggtgaggtt 383 ||||||||||||| ||||||| ||| ||||||||||||||||||| Sbjct: 10766 gactagcaaagctcaatgggtgaggcatggttaagtggtgaggtt 10722
>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence Length = 7674 Score = 272 bits (137), Expect = 8e-70 Identities = 158/165 (95%) Strand = Plus / Minus Query: 219 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 278 |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 4007 caactccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 3948 Query: 279 ggtgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaa 338 |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| Sbjct: 3947 ggtgttgtagtaatctgtgagccataggggactcagcaatctcatttccaaaggtatcaa 3888 Query: 339 gactagcaaagcttaatgggtaaggtatggttaagtggtgaggtt 383 |||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 3887 gactagcaaagcttaatgggtaaggtatggttaagtcgtgaggtt 3843 Score = 266 bits (134), Expect = 5e-68 Identities = 181/197 (91%), Gaps = 6/197 (3%) Strand = Plus / Minus Query: 1 actgaaaagaagagagatatatattgaattggcttacactcgccacaagctacatcagag 60 ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 4213 actgaaaagaagagatatatataaagaattggcttacactcgccacaagctacatcagag 4154 Query: 61 tcaccttagaacattacataaacatcaagagtaagagcagggtccgtctgcggacgaaaa 120 |||| | || ||||||||||| |||||||||||||||||||||||| || |||||||||| Sbjct: 4153 tcacatcagtacattacataatcatcaagagtaagagcagggtccgactacggacgaaaa 4094 Query: 121 caaacgacaaaagaataacgacgtccatccttgctatcccaggctgccggcctggaaccc 180 ||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4093 caaacgagaa------aacgacgtccatccttgctatcccaggctgccggcctggaaccc 4040 Query: 181 atcctagatcgatgaag 197 ||||||||||||||||| Sbjct: 4039 atcctagatcgatgaag 4023
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 270 bits (136), Expect = 3e-69 Identities = 172/184 (93%) Strand = Plus / Plus Query: 14 gagatatatattgaattggcttacactcgccacaagctacatcagagtcaccttagaaca 73 |||||||||| || ||||||||||||||||||| |||||||||||||||| | || || Sbjct: 68138 gagatatataaagagttggcttacactcgccacaggctacatcagagtcacataagttca 68197 Query: 74 ttacataaacatcaagagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaag 133 |||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 68198 ttacataatcatcaagagtaagagcagggtccgactacggacgaaaacaaacgacaaaag 68257 Query: 134 aataacgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 193 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68258 aagaacgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgat 68317 Query: 194 gaag 197 |||| Sbjct: 68318 gaag 68321 Score = 256 bits (129), Expect = 5e-65 Identities = 156/165 (94%) Strand = Plus / Plus Query: 219 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 278 ||||||||||||||||||||| |||||||| |||| ||||| |||| ||||||||||||| Sbjct: 68334 caactccaaatgaacaatcaaagcgctcgcgtcaagtaaccattacgtgtacctgcaact 68393 Query: 279 ggtgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaa 338 |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 68394 ggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaaaggtatcaa 68453 Query: 339 gactagcaaagcttaatgggtaaggtatggttaagtggtgaggtt 383 |||||||||||||| |||||| ||||||||||||||||||||||| Sbjct: 68454 gactagcaaagctttatgggtgaggtatggttaagtggtgaggtt 68498
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 258 bits (130), Expect = 1e-65 Identities = 154/162 (95%) Strand = Plus / Plus Query: 219 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 278 |||||||| ||||||||||||||||||| | || |||||||||||||||||||||||||| Sbjct: 3503 caactccagatgaacaatcaacgcgctcacgtcgaataacctttacctgtacctgcaact 3562 Query: 279 ggtgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaa 338 |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 3563 ggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaaaggtatcaa 3622 Query: 339 gactagcaaagcttaatgggtaaggtatggttaagtggtgag 380 ||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 3623 gactagcaaagcttaatgggtgaggcatggttaagtggtgag 3664 Score = 250 bits (126), Expect = 3e-63 Identities = 160/170 (94%), Gaps = 1/170 (0%) Strand = Plus / Plus Query: 29 ttggcttacactcgccacaagctacatcagagtcaccttagaacattacataaacatcaa 88 |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 3318 ttggcttacactcgccacaagctacatcagagtcacctcagtacattacataatcatcaa 3377 Query: 89 gagtaagagcagggtccgtctgcggacgaaaa-caaacgacaaaagaataacgacgtcca 147 |||||||||||||||||| || ||| ||||| ||||||||||||||| ||||||||||| Sbjct: 3378 gagtaagagcagggtccgactatggatgaaaaacaaacgacaaaagaagaacgacgtcca 3437 Query: 148 tccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 197 ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 3438 tccttgctatcccaggctgccggcctggaacccatcctagatcgaagaag 3487
>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H Length = 59748 Score = 256 bits (129), Expect = 5e-65 Identities = 156/165 (94%) Strand = Plus / Plus Query: 219 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 278 |||||| ||||||||||||| ||||||||| |||| |||||||||||||||||||||||| Sbjct: 37472 caactcaaaatgaacaatcagcgcgctcgcgtcaagtaacctttacctgtacctgcaact 37531 Query: 279 ggtgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaa 338 |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 37532 ggtgttgtagtaatctgtgagccacaggggactcagcaatctcatttccaaaggtatcaa 37591 Query: 339 gactagcaaagcttaatgggtaaggtatggttaagtggtgaggtt 383 |||| |||||||||||||||| ||| ||||||||||||||||||| Sbjct: 37592 gactggcaaagcttaatgggtgaggaatggttaagtggtgaggtt 37636 Score = 256 bits (129), Expect = 5e-65 Identities = 181/197 (91%), Gaps = 1/197 (0%) Strand = Plus / Plus Query: 1 actgaaaagaagagagatatatattgaattggcttacactcgccacaagctacatcagag 60 ||||||||||||||| ||||||| || ||||||||||||| |||||||||||||||||| Sbjct: 37261 actgaaaagaagagatatatatacagagttggcttacactcaccacaagctacatcagag 37320 Query: 61 tcaccttagaacattacataaacatcaagagtaagagcagggtccgtctgcggacgaaaa 120 |||| | || ||||||||||| |||||||||||||||| ||||||| || |||||||||| Sbjct: 37321 tcacatcagtacattacataatcatcaagagtaagagcggggtccgactacggacgaaaa 37380 Query: 121 caaacgacaaaagaataacgacgtccatccttgctatcccaggctgccggcctggaaccc 180 ||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37381 caaacgagaaaatga-aacgacgtccatccttgctatcccaggctgccggcctggaaccc 37439 Query: 181 atcctagatcgatgaag 197 ||||||||||||||||| Sbjct: 37440 atcctagatcgatgaag 37456
>gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT4 gene, complete cds Length = 6561 Score = 242 bits (122), Expect = 7e-61 Identities = 181/198 (91%), Gaps = 2/198 (1%) Strand = Plus / Plus Query: 1 actgaaaagaagagagatatatattgaattgg-cttacactcgccacaagctacatcaga 59 ||||||| ||||||| ||||| || ||||||| ||||||||||||||||||||||||||| Sbjct: 2523 actgaaaggaagagatatata-atagaattgggcttacactcgccacaagctacatcaga 2581 Query: 60 gtcaccttagaacattacataaacatcaagagtaagagcagggtccgtctgcggacgaaa 119 ||||| | || ||||||||||| ||||||| |||||||||||||||| || ||||||||| Sbjct: 2582 gtcacatcagtacattacataatcatcaagggtaagagcagggtccgactacggacgaaa 2641 Query: 120 acaaacgacaaaagaataacgacgtccatccttgctatcccaggctgccggcctggaacc 179 |||| ||| ||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct: 2642 acaaccgagaaaagaagaacgacgtccatccttgctatcccaggctgccggtctggaacc 2701 Query: 180 catcctagatcgatgaag 197 |||||||||| ||||||| Sbjct: 2702 catcctagattgatgaag 2719 Score = 232 bits (117), Expect = 7e-58 Identities = 153/165 (92%) Strand = Plus / Plus Query: 219 caactccaaatgaacaatcaacgcgctcgcatcaaataacctttacctgtacctgcaact 278 ||||||||||| ||||||| |||||||||| |||| |||||||||| ||||| ||||||| Sbjct: 2762 caactccaaataaacaatccacgcgctcgcgtcaagtaacctttacatgtacttgcaact 2821 Query: 279 ggtgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaa 338 |||||||||||||||||||||||| | | |||||||||||||||||||||||| |||||| Sbjct: 2822 ggtgttgtagtaatctgtgagccataggggactcagcaatctcatttccaaagatatcaa 2881 Query: 339 gactagcaaagcttaatgggtaaggtatggttaagtggtgaggtt 383 ||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 2882 gactagcaaagcttaatgggtgaggcatggttaagtggtgaggtt 2926
>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic sequence Length = 3124 Score = 180 bits (91), Expect = 2e-42 Identities = 146/163 (89%), Gaps = 1/163 (0%) Strand = Plus / Minus Query: 220 aactccaaatgaacaatcaacgcgctcgcatca-aataacctttacctgtacctgcaact 278 ||||||||||||||||||| |||| | | || |||| ||||||| ||||||||||||| Sbjct: 2220 aactccaaatgaacaatcatcgcgtgcacgtcttaatatcctttacatgtacctgcaact 2161 Query: 279 ggtgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaa 338 | |||| ||||||||||||||||||| | ||||| ||||||||||||||||| ||||||| Sbjct: 2160 gatgttatagtaatctgtgagccacaggggactcggcaatctcatttccaaaagtatcaa 2101 Query: 339 gactagcaaagcttaatgggtaaggtatggttaagtggtgagg 381 ||||||||||||||||||| | ||||||||||||||||||||| Sbjct: 2100 gactagcaaagcttaatggatgaggtatggttaagtggtgagg 2058 Score = 157 bits (79), Expect = 3e-35 Identities = 156/180 (86%), Gaps = 5/180 (2%) Strand = Plus / Minus Query: 20 tatattgaattggcttacactcgccacaagctacatcagagtcaccttagaacattacat 79 ||||| ||||||||||||| ||||||||||||||||||||||||| | ||||||||| Sbjct: 2411 tatatggaattggcttacaatcgccacaagctacatcagagtcacatcgatacattacat 2352 Query: 80 aaa--catcaagagtaagagcagggtccgtctgcggacgaaaacaaacgacaaaagaata 137 | | | || || |||||||||||||| || || |||||||||||||| ||||||| Sbjct: 2351 acaatcgccatgaagaagagcagggtccgactacgaacgaaaacaaacgataaaagaa-- 2294 Query: 138 acgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatgaag 197 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct: 2293 -cgacgtccatccttgctatcccaggctgccgacctggaacccatcctagatcgacgaag 2235
>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7731 Score = 165 bits (83), Expect = 1e-37 Identities = 114/123 (92%), Gaps = 1/123 (0%) Strand = Plus / Minus Query: 261 ttacctgtacctgcaactggtgttgtagtaatctgtgagccacacgagactcagcaatct 320 |||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| Sbjct: 4078 ttacctgtacctgcaactggtgttgtaggaatctgtgagccacggg-gactcagcaatct 4020 Query: 321 catttccaaaggtatcaagactagcaaagcttaatgggtaaggtatggttaagtggtgag 380 ||||||||| ||||||||||||| |||||||||| || ||||||||||||||||||||| Sbjct: 4019 catttccaagggtatcaagactattaaagcttaataggcaaggtatggttaagtggtgag 3960 Query: 381 gtt 383 ||| Sbjct: 3959 gtt 3957 Score = 91.7 bits (46), Expect = 2e-15 Identities = 91/105 (86%), Gaps = 7/105 (6%) Strand = Plus / Minus Query: 93 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 152 |||||||||||||| || ||||||||||||||||| |||| ||| ||||||||| Sbjct: 4230 aagagcagggtccgactacggacgaaaacaaacgataaaat------gacatccatcctt 4177 Query: 153 gctatcccaggctgccggcctggaacccatcctagatcgatgaag 197 |||||||||||||||| ||||||||||||||||| ||||| |||| Sbjct: 4176 gctatcccaggctgcc-gcctggaacccatcctatatcgaagaag 4133 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 20 tatattgaattggcttacactcgccacaagctaca 54 ||||| ||||||||||||||||||||||||||||| Sbjct: 4308 tatatggaattggcttacactcgccacaagctaca 4274
>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7586 Score = 137 bits (69), Expect = 3e-29 Identities = 109/121 (90%), Gaps = 1/121 (0%) Strand = Plus / Minus Query: 261 ttacctgtacctgcaactggtgttgtagtaatctgtgagccacacgagactcagcaatct 320 |||||||||||||||||| |||||||| |||||||||||||| | |||||| |||||| Sbjct: 3876 ttacctgtacctgcaactattgttgtaggaatctgtgagccacggg-gactcaacaatct 3818 Query: 321 catttccaaaggtatcaagactagcaaagcttaatgggtaaggtatggttaagtggtgag 380 ||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct: 3817 catttccaagggtatcaagactattaaagcttaatgggtgaggtaaggttaagtggtgag 3758 Query: 381 g 381 | Sbjct: 3757 g 3757 Score = 67.9 bits (34), Expect = 2e-08 Identities = 44/46 (95%), Gaps = 1/46 (2%) Strand = Plus / Minus Query: 145 ccatccttgctatcccaggctgccggcctggaacccatcctagatc 190 |||||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 3985 ccatccttgctatcccaggctgcc-gcctggaacccatcctggatc 3941 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 20 tatattgaattggcttacactcgccacaagctaca 54 ||||| ||||||||||||||||||||||||||||| Sbjct: 4109 tatatggaattggcttacactcgccacaagctaca 4075
>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7919 Score = 129 bits (65), Expect = 7e-27 Identities = 108/121 (89%), Gaps = 1/121 (0%) Strand = Plus / Minus Query: 261 ttacctgtacctgcaactggtgttgtagtaatctgtgagccacacgagactcagcaatct 320 |||||||||||| |||||| |||| ||||||| |||||||||| | |||||| |||||| Sbjct: 4187 ttacctgtacctccaactgttgttatagtaatttgtgagccacggg-gactcaacaatct 4129 Query: 321 catttccaaaggtatcaagactagcaaagcttaatgggtaaggtatggttaagtggtgag 380 ||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct: 4128 catttccaagggtatcaagactattaaagcttaatgggtgaggtacggttaagtggtgag 4069 Query: 381 g 381 | Sbjct: 4068 g 4068 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 20 tatattgaattggcttacactcgccacaagctacatcagagtcac 64 ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 4419 tatatagaattggcttacactcgtcacaagctacatcagagtcac 4375 Score = 54.0 bits (27), Expect = 3e-04 Identities = 87/106 (82%), Gaps = 7/106 (6%) Strand = Plus / Minus Query: 92 taagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcct 151 ||||||||||||||| || ||||||||| ||||| | |||| ||| |||||||| Sbjct: 4343 taagagcagggtccgactacggacgaaatcaaacaataaaat------gacatccatcct 4290 Query: 152 tgctatcccaggctgccggcctggaacccatcctagatcgatgaag 197 |||||||| |||||||| |||| ||| |||||||| || ||||||| Sbjct: 4289 tgctatcctaggctgcc-gcctagaatccatcctaaattgatgaag 4245
>gb|DQ146421.1| Triticum monococcum strain PI503874 VRN1 (VRN1) gene, complete cds Length = 16224 Score = 117 bits (59), Expect = 3e-23 Identities = 108/123 (87%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 259 ctttacctgtacctgcaactggtgttgtagtaatctgtgagccacacgagactcagcaat 318 ||||||||||||||||| ||| |||||||||||||||||||||| | ||| || |||| Sbjct: 11142 ctttacctgtacctgcacctgttgttgtagtaatctgtgagccatggg-gacccaacaat 11200 Query: 319 ctcatttccaaaggtatcaagactagcaaagcttaatgggtaaggtatggttaagtggtg 378 |||||| |||| |||| ||| ||||||||||||||||||||| || | |||||||||||| Sbjct: 11201 ctcattaccaagggtagcaaaactagcaaagcttaatgggtatggaagggttaagtggtg 11260 Query: 379 agg 381 ||| Sbjct: 11261 agg 11263
>gb|DQ146422.1| Triticum monococcum strain PI326317 VRN1 (VRN1) gene, complete cds Length = 15688 Score = 117 bits (59), Expect = 3e-23 Identities = 108/123 (87%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 259 ctttacctgtacctgcaactggtgttgtagtaatctgtgagccacacgagactcagcaat 318 ||||||||||||||||| ||| |||||||||||||||||||||| | ||| || |||| Sbjct: 10606 ctttacctgtacctgcacctgttgttgtagtaatctgtgagccatggg-gacccaacaat 10664 Query: 319 ctcatttccaaaggtatcaagactagcaaagcttaatgggtaaggtatggttaagtggtg 378 |||||| |||| |||| ||| ||||||||||||||||||||| || | |||||||||||| Sbjct: 10665 ctcattaccaagggtagcaaaactagcaaagcttaatgggtatggaagggttaagtggtg 10724 Query: 379 agg 381 ||| Sbjct: 10725 agg 10727
>gb|DQ146423.1| Triticum monococcum strain PI306540 VRN1 (VRN1) gene, complete cds Length = 16209 Score = 117 bits (59), Expect = 3e-23 Identities = 108/123 (87%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 259 ctttacctgtacctgcaactggtgttgtagtaatctgtgagccacacgagactcagcaat 318 ||||||||||||||||| ||| |||||||||||||||||||||| | ||| || |||| Sbjct: 11127 ctttacctgtacctgcacctgttgttgtagtaatctgtgagccatggg-gacccaacaat 11185 Query: 319 ctcatttccaaaggtatcaagactagcaaagcttaatgggtaaggtatggttaagtggtg 378 |||||| |||| |||| ||| ||||||||||||||||||||| || | |||||||||||| Sbjct: 11186 ctcattaccaagggtagcaaaactagcaaagcttaatgggtatggaagggttaagtggtg 11245 Query: 379 agg 381 ||| Sbjct: 11246 agg 11248
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence Length = 133625 Score = 117 bits (59), Expect = 3e-23 Identities = 108/123 (87%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 259 ctttacctgtacctgcaactggtgttgtagtaatctgtgagccacacgagactcagcaat 318 ||||||||||||||||| ||| |||||||||||||||||||||| | ||| || |||| Sbjct: 77678 ctttacctgtacctgcacctgttgttgtagtaatctgtgagccatggg-gacccaacaat 77736 Query: 319 ctcatttccaaaggtatcaagactagcaaagcttaatgggtaaggtatggttaagtggtg 378 |||||| |||| |||| ||| ||||||||||||||||||||| || | |||||||||||| Sbjct: 77737 ctcattaccaagggtagcaaaactagcaaagcttaatgggtatggaagggttaagtggtg 77796 Query: 379 agg 381 ||| Sbjct: 77797 agg 77799 Score = 48.1 bits (24), Expect = 0.021 Identities = 33/36 (91%) Strand = Plus / Plus Query: 286 tagtaatctgtgagccacacgagactcagcaatctc 321 ||||||||||||||||||| |||||||||||||| Sbjct: 114726 tagtaatctgtgagccacaaaggactcagcaatctc 114761 Score = 48.1 bits (24), Expect = 0.021 Identities = 33/36 (91%) Strand = Plus / Plus Query: 286 tagtaatctgtgagccacacgagactcagcaatctc 321 ||||||||||||||||||| |||||||||||||| Sbjct: 104859 tagtaatctgtgagccacaaaggactcagcaatctc 104894
>gb|AY747599.1| Triticum aestivum cultivar IL369 line VRN-A1 (VRN-A1) gene, complete cds; and gypsy retrotransposon Sukkula, complete sequence Length = 6730 Score = 81.8 bits (41), Expect = 2e-12 Identities = 87/101 (86%), Gaps = 1/101 (0%) Strand = Plus / Plus Query: 281 tgttgtagtaatctgtgagccacacgagactcagcaatctcatttccaaaggtatcaaga 340 |||||||||||||| ||||||| | ||| ||||||||||||| |||| |||| ||| | Sbjct: 2080 tgttgtagtaatctatgagccatggg-gacccagcaatctcattaccaagggtagcaaaa 2138 Query: 341 ctagcaaagcttaatgggtaaggtatggttaagtggtgagg 381 ||||||||| |||||||||| || | ||||||||||||||| Sbjct: 2139 ctagcaaagattaatgggtatggaagggttaagtggtgagg 2179
>gb|AY747601.1| Triticum aestivum cultivar Triple Dirk D line VRN-A1 (VRN-A1) gene, complete cds; and Stowaway MITE and gypsy retrotransposon Sukkula, complete sequence Length = 12464 Score = 75.8 bits (38), Expect = 9e-11 Identities = 62/70 (88%) Strand = Plus / Plus Query: 312 cagcaatctcatttccaaaggtatcaagactagcaaagcttaatgggtaaggtatggtta 371 ||||||||||||| |||| |||| ||| |||||||||| |||||||||| || | ||||| Sbjct: 7846 cagcaatctcattaccaagggtagcaaaactagcaaagattaatgggtatggaagggtta 7905 Query: 372 agtggtgagg 381 |||||||||| Sbjct: 7906 agtggtgagg 7915 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 ttacactcgccacaagctaca 54 ||||||||||||||||||||| Sbjct: 7583 ttacactcgccacaagctaca 7603
>gb|AY747600.1| Triticum aestivum cultivar Triple Dirk C line VRN-A1 (VRN-A1) gene, complete cds; and Stowaway MITE and gypsy retrotransposon Sukkula, complete sequence Length = 12233 Score = 75.8 bits (38), Expect = 9e-11 Identities = 62/70 (88%) Strand = Plus / Plus Query: 312 cagcaatctcatttccaaaggtatcaagactagcaaagcttaatgggtaaggtatggtta 371 ||||||||||||| |||| |||| ||| |||||||||| |||||||||| || | ||||| Sbjct: 7615 cagcaatctcattaccaagggtagcaaaactagcaaagattaatgggtatggaagggtta 7674 Query: 372 agtggtgagg 381 |||||||||| Sbjct: 7675 agtggtgagg 7684 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 ttacactcgccacaagctaca 54 ||||||||||||||||||||| Sbjct: 7352 ttacactcgccacaagctaca 7372
>gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula retrotransposon, partial sequence Length = 3434 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 20 tatattgaattggcttacactcgccacaagctacatca 57 ||||| |||||||||||||||||||||||||||||||| Sbjct: 147 tatatggaattggcttacactcgccacaagctacatca 110 Score = 63.9 bits (32), Expect = 4e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 93 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 152 |||||||||||||| || ||||||||||||||||| || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaacaaacgataa------aatgacatccatcctt 16 Query: 153 gctatcccaggctgc 167 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1
>gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposon, partial sequence Length = 3622 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 20 tatattgaattggcttacactcgccacaagctacatca 57 ||||| |||||||||||||||||||||||||||||||| Sbjct: 147 tatatggaattggcttacactcgccacaagctacatca 110 Score = 63.9 bits (32), Expect = 4e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 93 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 152 |||||||||||||| || ||||||||||||||||| || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaacaaacgataa------aatgacatccatcctt 16 Query: 153 gctatcccaggctgc 167 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1
>gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransposon, partial sequence Length = 3764 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 20 tatattgaattggcttacactcgccacaagctacatca 57 ||||| |||||||||||||||||||||||||||||||| Sbjct: 147 tatatggaattggcttacactcgccacaagctacatca 110 Score = 56.0 bits (28), Expect = 9e-05 Identities = 63/75 (84%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 93 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 152 |||||||||||||| || |||||||||||||| || || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaacaaatgataa------aatgacatccatcctt 16 Query: 153 gctatcccaggctgc 167 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1
>gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransposon, partial sequence Length = 3774 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 20 tatattgaattggcttacactcgccacaagctacatca 57 ||||| |||||||||||||||||||||||||||||||| Sbjct: 147 tatatggaattggcttacactcgccacaagctacatca 110 Score = 56.0 bits (28), Expect = 9e-05 Identities = 63/75 (84%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 93 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 152 |||||||||||||| || |||||||||||||| || || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaacaaatgataa------aatgacatccatcctt 16 Query: 153 gctatcccaggctgc 167 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1
>gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposon, partial sequence Length = 3613 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 20 tatattgaattggcttacactcgccacaagctacatca 57 ||||| |||||||||||||||||||||||||||||||| Sbjct: 147 tatatggaattggcttacactcgccacaagctacatca 110 Score = 63.9 bits (32), Expect = 4e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 93 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 152 |||||||||||||| || ||||||||||||||||| || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaacaaacgataa------aatgacatccatcctt 16 Query: 153 gctatcccaggctgc 167 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1
>gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposon sukkula, complete sequence Length = 3695 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 20 tatattgaattggcttacactcgccacaagctacatca 57 ||||| |||||||||||||||||||||||||||||||| Sbjct: 147 tatatggaattggcttacactcgccacaagctacatca 110 Score = 63.9 bits (32), Expect = 4e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 93 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 152 ||||||||||||| ||| ||||||||||||||||| || || ||| ||||||||| Sbjct: 69 aagagcagggtccatctacggacgaaaacaaacgataa------aatgacatccatcctt 16 Query: 153 gctatcccaggctgc 167 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1
>gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposon sukkula, complete sequence Length = 3683 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 20 tatattgaattggcttacactcgccacaagctacatca 57 ||||| |||||||||||||||||||||||||||||||| Sbjct: 147 tatatggaattggcttacactcgccacaagctacatca 110 Score = 48.1 bits (24), Expect = 0.021 Identities = 62/75 (82%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 93 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 152 |||||||||||||| || |||||||||| ||| || || || ||| ||||||||| Sbjct: 69 aagagcagggtccgactacggacgaaaaaaaatgataa------aatgacatccatcctt 16 Query: 153 gctatcccaggctgc 167 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1
>gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotransposon, partial sequence Length = 3698 Score = 63.9 bits (32), Expect = 4e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 93 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 152 |||||||||||||| || ||||||||||||||||| || ||| || ||||||||| Sbjct: 69 aagagcagggtccggctacggacgaaaacaaacgataa------aacaacatccatcctt 16 Query: 153 gctatcccaggctgc 167 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 20 tatattgaattggcttacactcgccacaagctaca 54 ||||| ||||||||||||||||||||||||||||| Sbjct: 147 tatatggaattggcttacactcgccacaagctaca 113
>gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotransposon, partial sequence Length = 3804 Score = 63.9 bits (32), Expect = 4e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 93 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 152 |||||||||||||| || ||||||||||||||||| || ||| || ||||||||| Sbjct: 69 aagagcagggtccggctacggacgaaaacaaacgataa------aacaacatccatcctt 16 Query: 153 gctatcccaggctgc 167 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 20 tatattgaattggcttacactcgccacaagctaca 54 ||||| ||||||||||||||||||||||||||||| Sbjct: 146 tatatggaattggcttacactcgccacaagctaca 112
>gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotransposon, partial sequence Length = 3943 Score = 63.9 bits (32), Expect = 4e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 93 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 152 |||||||||||||| || ||||||||||||||||| || ||| || ||||||||| Sbjct: 69 aagagcagggtccggctacggacgaaaacaaacgataa------aacaacatccatcctt 16 Query: 153 gctatcccaggctgc 167 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 20 tatattgaattggcttacactcgccacaagctaca 54 ||||| ||||||||||||||||||||||||||||| Sbjct: 146 tatatggaattggcttacactcgccacaagctaca 112
>gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotransposon, partial sequence Length = 3862 Score = 63.9 bits (32), Expect = 4e-07 Identities = 64/75 (85%), Gaps = 6/75 (8%) Strand = Plus / Minus Query: 93 aagagcagggtccgtctgcggacgaaaacaaacgacaaaagaataacgacgtccatcctt 152 |||||||||||||| || | ||||||||||||||| |||| |||| ||||||||| Sbjct: 69 aagagcagggtccgactacagacgaaaacaaacgataaaa------cgacatccatcctt 16 Query: 153 gctatcccaggctgc 167 ||||||||||||||| Sbjct: 15 gctatcccaggctgc 1 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 20 tatattgaattggcttacactcgccacaagctacatca 57 ||||| ||||||||||||||||||||||||||| |||| Sbjct: 147 tatatggaattggcttacactcgccacaagctaaatca 110
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 58.0 bits (29), Expect = 2e-05 Identities = 51/57 (89%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 265 ctgtacctgcaactggtgttgtagtaatctgtgagccacacgagactcagcaatctc 321 |||| |||||| ||||||| ||||||||||||||||||| | |||||||||||||| Sbjct: 48070 ctgtccctgcatctggtgtaatagtaatctgtgagccacaag-gactcagcaatctc 48015 Score = 50.1 bits (25), Expect = 0.005 Identities = 41/45 (91%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 277 ctggtgttgtagtaatctgtgagccacacgagactcagcaatctc 321 ||||||| ||||||||||||||||||| | |||||||||||||| Sbjct: 109952 ctggtgtactagtaatctgtgagccaca-gggactcagcaatctc 109909 Score = 50.1 bits (25), Expect = 0.005 Identities = 41/45 (91%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 277 ctggtgttgtagtaatctgtgagccacacgagactcagcaatctc 321 ||||||| ||||||||||||||||||| | |||||||||||||| Sbjct: 66552 ctggtgtaatagtaatctgtgagccacaag-gactcagcaatctc 66509
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence Length = 307015 Score = 56.0 bits (28), Expect = 9e-05 Identities = 47/52 (90%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 270 cctgcaactggtgttgtagtaatctgtgagccacacgagactcagcaatctc 321 |||||| ||||||| ||||||||||||||||||| | |||||||||||||| Sbjct: 3191 cctgcatctggtgtaatagtaatctgtgagccaca-gggactcagcaatctc 3241 Score = 48.1 bits (24), Expect = 0.021 Identities = 53/60 (88%), Gaps = 2/60 (3%) Strand = Plus / Minus Query: 263 acctgtacctgcaactggtgttgtagtaatctgtgagccacacgagactcagcaatctca 322 ||||| ||||||| |||| |||||| || ||||||||||||| | ||||||||||||||| Sbjct: 284435 acctggacctgcacctggagttgtaata-tctgtgagccacagg-gactcagcaatctca 284378 Score = 48.1 bits (24), Expect = 0.021 Identities = 53/60 (88%), Gaps = 2/60 (3%) Strand = Plus / Minus Query: 263 acctgtacctgcaactggtgttgtagtaatctgtgagccacacgagactcagcaatctca 322 ||||| ||||||| |||| |||||| || ||||||||||||| | ||||||||||||||| Sbjct: 274921 acctggacctgcacctggagttgtaata-tctgtgagccacagg-gactcagcaatctca 274864
>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome condensation factor (CCF), putative resistance protein (RGA-2), putative resistance protein (RGA2) and putative nodulin-like-like protein (NLL) gene, complete cds; and retrotransposons Josephine, Angela-2, Angela-4, Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5, Barbara, Isabelle, Erika-2, and Claudia Length = 211009 Score = 56.0 bits (28), Expect = 9e-05 Identities = 47/52 (90%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 270 cctgcaactggtgttgtagtaatctgtgagccacacgagactcagcaatctc 321 |||||| ||||||| ||||||||||||||||||| | |||||||||||||| Sbjct: 125779 cctgcatctggtgtaatagtaatctgtgagccacaag-gactcagcaatctc 125829 Score = 56.0 bits (28), Expect = 9e-05 Identities = 47/52 (90%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 270 cctgcaactggtgttgtagtaatctgtgagccacacgagactcagcaatctc 321 |||||| ||||||| ||||||||||||||||||| | |||||||||||||| Sbjct: 104680 cctgcatctggtgtaatagtaatctgtgagccacaag-gactcagcaatctc 104730
>gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkula retrotransposon, partial sequence Length = 4001 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 137 aacgacgtccatccttgctatcccaggctgc 167 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 Sukkula retrotransposon, partial sequence Length = 3935 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 137 aacgacgtccatccttgctatcccaggctgc 167 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransposon, partial sequence Length = 3997 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 137 aacgacgtccatccttgctatcccaggctgc 167 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotransposon, partial sequence Length = 4120 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 137 aacgacgtccatccttgctatcccaggctgc 167 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposon, partial sequence Length = 2924 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 137 aacgacgtccatccttgctatcccaggctgc 167 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposon, partial sequence Length = 2923 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 137 aacgacgtccatccttgctatcccaggctgc 167 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rpg1 region, genomic sequence Length = 7321 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 347 aagcttaatgggtaaggtatggttaagtggtgagg 381 ||||||||||| | ||||||||||||||||||||| Sbjct: 7321 aagcttaatggatgaggtatggttaagtggtgagg 7287
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 50.1 bits (25), Expect = 0.005 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 265 ctgtacctgcaactggtgttgtagtaatctgtgagccacacgagactcagcaatctc 321 |||| |||||| ||||||| ||||||||||||| ||||| | |||||||||||||| Sbjct: 125353 ctgtccctgcatctggtgtaatagtaatctgtgaaccaca-gggactcagcaatctc 125408
>gb|AC150889.3| Medicago truncatula chromosome 7 BAC clone mte1-61j12, complete sequence Length = 116517 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 117 aaaacaaacgacaaaagaataa 138 |||||||||||||||||||||| Sbjct: 58886 aaaacaaacgacaaaagaataa 58865
>gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, complete sequence Length = 172618 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 tccttgctatcccaggctgcc 168 ||||||||||||||||||||| Sbjct: 170021 tccttgctatcccaggctgcc 170001
>emb|AL513204.10| Human DNA sequence from clone RP11-418B8 on chromosome 10 Contains part of the NRG3 gene for neuregulin 3, complete sequence Length = 111173 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 gactcagcaatctcatttcca 328 ||||||||||||||||||||| Sbjct: 109921 gactcagcaatctcatttcca 109901
>emb|AL354749.6| Human DNA sequence from clone RP11-156D10 on chromosome 10 Contains part of the NRG3 gene for neuregulin 3, complete sequence Length = 196000 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 gactcagcaatctcatttcca 328 ||||||||||||||||||||| Sbjct: 35644 gactcagcaatctcatttcca 35624
>ref|XM_782382.1| PREDICTED: Strongylocentrotus purpuratus similar to Alpha-amylase B precursor (1,4-alpha-D-glucan glucanohydrolase) (LOC582432), mRNA Length = 873 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 cacgagactcagcaatctcat 323 ||||||||||||||||||||| Sbjct: 591 cacgagactcagcaatctcat 611
>gb|AC145218.29| Medicago truncatula clone mth2-34l18, complete sequence Length = 134519 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 agaacattacataaacatcaa 88 ||||||||||||||||||||| Sbjct: 65757 agaacattacataaacatcaa 65737
>gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, complete sequence Length = 168864 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 tccttgctatcccaggctgcc 168 ||||||||||||||||||||| Sbjct: 20040 tccttgctatcccaggctgcc 20020
>gb|AC011249.7| Drosophila melanogaster clone BACR37F23, complete sequence Length = 164973 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ttagaacattacataaacat 85 |||||||||||||||||||| Sbjct: 53766 ttagaacattacataaacat 53785
>ref|NM_015130.1| Homo sapiens TBC1 domain family, member 9 (TBC1D9), mRNA Length = 5191 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 ctggtgttgtagtaatctgtgagc 300 ||||||||||||||||||| |||| Sbjct: 2185 ctggtgttgtagtaatctgggagc 2162
>dbj|AK127020.1| Homo sapiens cDNA FLJ45076 fis, clone BRAWH3027574, weakly similar to Homo sapiens vascular Rab-GAP/TBC-containing (VRP) Length = 4479 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 ctggtgttgtagtaatctgtgagc 300 ||||||||||||||||||| |||| Sbjct: 1473 ctggtgttgtagtaatctgggagc 1450
>gb|BC038804.1| Homo sapiens TBC1 domain family, member 9, mRNA (cDNA clone IMAGE:4525887) Length = 3621 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 ctggtgttgtagtaatctgtgagc 300 ||||||||||||||||||| |||| Sbjct: 299 ctggtgttgtagtaatctgggagc 276
>gb|AC009250.3|AC009250 Drosophila melanogaster, chromosome 2L, region 36B-36B, BAC clone BACR27M18, complete sequence Length = 170362 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 atatatattgaattggctta 36 |||||||||||||||||||| Sbjct: 83036 atatatattgaattggctta 83017
>gb|AC108019.3| Homo sapiens BAC clone RP11-5K16 from 4, complete sequence Length = 136867 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 277 ctggtgttgtagtaatctgtgagc 300 ||||||||||||||||||| |||| Sbjct: 104338 ctggtgttgtagtaatctgggagc 104361
>gb|AC112720.2| Homo sapiens BAC clone RP11-696L6 from 2, complete sequence Length = 96416 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gactcagcaatctcatttcc 327 |||||||||||||||||||| Sbjct: 33713 gactcagcaatctcatttcc 33694
>gb|AE003653.3| Drosophila melanogaster chromosome 2L, section 62 of 83 of the complete sequence Length = 247634 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 atatatattgaattggctta 36 |||||||||||||||||||| Sbjct: 6324 atatatattgaattggctta 6343
>gb|AE003614.4| Drosophila melanogaster chromosome 2L, section 23 of 83 of the complete sequence Length = 259718 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ttagaacattacataaacat 85 |||||||||||||||||||| Sbjct: 10406 ttagaacattacataaacat 10387
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 aactccaaatgaacaatcaa 239 |||||||||||||||||||| Sbjct: 403914 aactccaaatgaacaatcaa 403933
>gb|AC122506.4| Mus musculus BAC clone RP24-426J4 from 15, complete sequence Length = 166555 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 agcaatctcatttccaaagg 332 |||||||||||||||||||| Sbjct: 149747 agcaatctcatttccaaagg 149728
>dbj|AB020689.2| Homo sapiens mRNA for KIAA0882 protein, partial cds Length = 5286 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 277 ctggtgttgtagtaatctgtgagc 300 ||||||||||||||||||| |||| Sbjct: 1988 ctggtgttgtagtaatctgggagc 1965 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,930,518 Number of Sequences: 3902068 Number of extensions: 2930518 Number of successful extensions: 53501 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53279 Number of HSP's gapped (non-prelim): 196 length of query: 383 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 361 effective length of database: 17,147,199,772 effective search space: 6190139117692 effective search space used: 6190139117692 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
