ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACA1_ARATH (Q37145) Calcium-transporting ATPase 1, chloroplast p... 36 0.027
2SCRB_KLEPN (P27217) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) ... 31 0.86
3SCRB_SALTY (P37075) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) ... 28 4.3
4ACA2_ARATH (O81108) Calcium-transporting ATPase 2, plasma membra... 28 4.3
5SL9A3_HUMAN (P48764) Sodium/hydrogen exchanger 3 (Na(+)/H(+) exc... 28 7.3
6ZN493_HUMAN (Q6ZR52) Zinc finger protein 493 28 7.3
7ACA7_ARATH (O64806) Putative calcium-transporting ATPase 7, plas... 28 7.3
8YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I 27 9.5

>ACA1_ARATH (Q37145) Calcium-transporting ATPase 1, chloroplast precursor (EC|
            3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
            ATPase 1)
          Length = 1020

 Score = 35.8 bits (81), Expect = 0.027
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = -3

Query: 353  IVIGFIGMPTAAIVKLIPVGS 291
            I++GF+GMP AA +K+IPVGS
Sbjct: 999  IILGFLGMPVAAALKMIPVGS 1019



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>SCRB_KLEPN (P27217) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) (Sucrase)|
           (Invertase)
          Length = 465

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 198 TTAPELHWRHQPLVLLPD 251
           ++A  LHWRH+P+ L+PD
Sbjct: 73  SSADLLHWRHEPIALMPD 90



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>SCRB_SALTY (P37075) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) (Sucrase)|
           (Invertase)
          Length = 466

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 213 LHWRHQPLVLLPD 251
           LHW+H+P+ L+PD
Sbjct: 79  LHWQHEPIALMPD 91



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>ACA2_ARATH (O81108) Calcium-transporting ATPase 2, plasma membrane-type (EC|
            3.6.3.8) (Ca(2+)-ATPase isoform 2)
          Length = 1014

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = -3

Query: 353  IVIGFIGMPTAAIVKLIPV 297
            I IGF+GMP AA +K IPV
Sbjct: 996  IFIGFLGMPIAAGLKTIPV 1014



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>SL9A3_HUMAN (P48764) Sodium/hydrogen exchanger 3 (Na(+)/H(+) exchanger 3)|
           (NHE-3) (Solute carrier family 9 member 3)
          Length = 834

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -2

Query: 180 LSAINPFYLGESMAFFFLLHLIFRGRAKTVGLILQKCLID 61
           +SA+NPF    + AF  LL L+F    + +G++LQ  L++
Sbjct: 356 ISAVNPFIWTWNTAFV-LLTLVFISVYRAIGVVLQTWLLN 394



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>ZN493_HUMAN (Q6ZR52) Zinc finger protein 493|
          Length = 646

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = +1

Query: 22  TPRKIT*KKKLQGVYQTLLKNQAHSLGSSSKDQMQKKKEGHRFT*I------KRINSRKN 183
           T  KI    K   V+  LL +  H+   + K   + KK G  F  +      KRI+ R+N
Sbjct: 21  TQSKIFQCDKYVKVFHKLLNSNRHNTKHTGKKPFKCKKCGKSFCMLLHLCQHKRIHIREN 80

Query: 184 SFLCSQ 201
           S+ C +
Sbjct: 81  SYRCEE 86



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>ACA7_ARATH (O64806) Putative calcium-transporting ATPase 7, plasma membrane-type|
            (EC 3.6.3.8) (Ca(2+)-ATPase isoform 7)
          Length = 1015

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 353  IVIGFIGMPTAAIVKLIPV 297
            I +GF+GMP AA +K IPV
Sbjct: 997  IFVGFLGMPIAAGLKKIPV 1015



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>YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I|
          Length = 218

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 82  NQAHSLGSSSKDQMQKKKEGHRFT*IKRINSRKNS---FLCSQQ 204
           N   S GSS +   ++KK+   +  ++RIN R      F C QQ
Sbjct: 42  NMKASFGSSKRYDERQKKKRSEYRRLRRINQRNRDKFCFACRQQ 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,620,440
Number of Sequences: 219361
Number of extensions: 772632
Number of successful extensions: 1586
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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