ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl09a10 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 76.6 bits (187), Expect = 2e-14 Identities = 35/41 (85%), Positives = 37/41 (90%) Frame = -3 Query: 438 QLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 +LKNR GPAKFPYMLLYPNTSDH G A GLTA+GIPNSISI Sbjct: 822 ELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 71.6 bits (174), Expect = 8e-13 Identities = 33/40 (82%), Positives = 36/40 (90%) Frame = -3 Query: 435 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 LKNR GPA+FPYMLLYPNTSD TG A G+TA+GIPNSISI Sbjct: 827 LKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 69.3 bits (168), Expect = 4e-12 Identities = 31/40 (77%), Positives = 35/40 (87%) Frame = -3 Query: 435 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 LKNR GPA FPY L++PNTSD+ G AEG+TARGIPNSISI Sbjct: 824 LKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 64.3 bits (155), Expect = 1e-10 Identities = 30/39 (76%), Positives = 31/39 (79%) Frame = -3 Query: 432 KNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 KNR GP FPY LLYPNTSD G A GL+ARGIPNSISI Sbjct: 832 KNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 62.0 bits (149), Expect = 6e-10 Identities = 31/41 (75%), Positives = 33/41 (80%), Gaps = 1/41 (2%) Frame = -3 Query: 435 LKNRTGPAKFPYMLLYPNTSDHTGQ-AEGLTARGIPNSISI 316 LKNR GP K PYMLLYPNTSD T + +GLTA GIPNSISI Sbjct: 837 LKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 50.4 bits (119), Expect = 2e-06 Identities = 26/40 (65%), Positives = 29/40 (72%) Frame = -3 Query: 435 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 L+NR GPAK PY LLYP++ EGLT RGIPNSISI Sbjct: 820 LRNRYGPAKMPYTLLYPSSE------EGLTFRGIPNSISI 853
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 49.7 bits (117), Expect = 3e-06 Identities = 25/40 (62%), Positives = 28/40 (70%) Frame = -3 Query: 435 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 L+NR GP K PY LLYP++ EGLT RGIPNSISI Sbjct: 833 LRNRYGPVKMPYTLLYPSSE------EGLTCRGIPNSISI 866
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 47.8 bits (112), Expect = 1e-05 Identities = 24/41 (58%), Positives = 29/41 (70%) Frame = -3 Query: 438 QLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 +L+NR GP + PY LLYP++ EGLT RGIPNSISI Sbjct: 827 KLRNRHGPVEMPYTLLYPSSK------EGLTFRGIPNSISI 861
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 47.4 bits (111), Expect = 2e-05 Identities = 24/40 (60%), Positives = 27/40 (67%) Frame = -3 Query: 435 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 L NR GP + PY LL+PN +EGLT RGIPNSISI Sbjct: 833 LSNRLGPVQLPYTLLHPN-------SEGLTCRGIPNSISI 865
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 47.0 bits (110), Expect = 2e-05 Identities = 24/40 (60%), Positives = 26/40 (65%) Frame = -3 Query: 435 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 L+NR GP K PY +L P D EGLT RGIPNSISI Sbjct: 828 LRNRNGPVKMPYTVLLPTCED-----EGLTFRGIPNSISI 862
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 45.4 bits (106), Expect = 6e-05 Identities = 23/38 (60%), Positives = 26/38 (68%) Frame = -3 Query: 429 NRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 NR GP + PY LLYP++ EGLT RGIPNSISI Sbjct: 808 NRLGPVQLPYTLLYPSSE------EGLTFRGIPNSISI 839
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 45.1 bits (105), Expect = 8e-05 Identities = 23/41 (56%), Positives = 28/41 (68%) Frame = -3 Query: 438 QLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 +L+NR GP + PY LL P++ EGLT RGIPNSISI Sbjct: 823 KLRNRCGPVQMPYTLLLPSSK------EGLTFRGIPNSISI 857
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 45.1 bits (105), Expect = 8e-05 Identities = 23/40 (57%), Positives = 26/40 (65%) Frame = -3 Query: 435 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 L+NRTGP + PY LL H EGLT +GIPNSISI Sbjct: 831 LRNRTGPVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 44.7 bits (104), Expect = 1e-04 Identities = 21/39 (53%), Positives = 26/39 (66%) Frame = -3 Query: 432 KNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 KNR+GP PY LL+P + EGLT +GIPNS+SI Sbjct: 827 KNRSGPVNVPYTLLFPTSE------EGLTGKGIPNSVSI 859
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 44.3 bits (103), Expect = 1e-04 Identities = 22/40 (55%), Positives = 27/40 (67%) Frame = -3 Query: 435 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 LKNRTG K PY LL+P++ G+T RGIPNS+SI Sbjct: 826 LKNRTGLVKMPYTLLFPSSEG------GVTGRGIPNSVSI 859
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 42.7 bits (99), Expect = 4e-04 Identities = 22/40 (55%), Positives = 27/40 (67%) Frame = -3 Query: 435 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 L +R GP + PY LL+P++ EGLT RGIPNSISI Sbjct: 831 LYHRVGPVQLPYTLLHPSSK------EGLTFRGIPNSISI 864
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 42.7 bits (99), Expect = 4e-04 Identities = 21/40 (52%), Positives = 25/40 (62%) Frame = -3 Query: 435 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 L NRTGP PY LL+P + GLT +GIPNS+SI Sbjct: 827 LTNRTGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 860
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 42.0 bits (97), Expect = 7e-04 Identities = 21/34 (61%), Positives = 24/34 (70%) Frame = -3 Query: 435 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGI 334 L+NRTGPAK PY LLYP++ EGLT RGI Sbjct: 714 LRNRTGPAKMPYTLLYPSSE------EGLTFRGI 741
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/40 (50%), Positives = 25/40 (62%) Frame = -3 Query: 435 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 L NR+GP PY LL+P + GLT +GIPNS+SI Sbjct: 828 LTNRSGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 861
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 35.8 bits (81), Expect = 0.049 Identities = 19/39 (48%), Positives = 23/39 (58%) Frame = -3 Query: 432 KNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 KNR G PY LL P++ G+T RG+PNSISI Sbjct: 886 KNRCGAGVLPYELLAPSSPP------GVTCRGVPNSISI 918
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 34.3 bits (77), Expect = 0.14 Identities = 20/39 (51%), Positives = 22/39 (56%) Frame = -3 Query: 432 KNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 KNR G PY LL P + G+T RGIPNSISI Sbjct: 864 KNRCGAGIVPYELLKPFSEP------GVTGRGIPNSISI 896
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 33.1 bits (74), Expect = 0.31 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = -3 Query: 432 KNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 +NR G PY L+ P++ G+T RG+PNS++I Sbjct: 867 RNRCGAGVLPYELMAPSSGP------GITCRGVPNSVTI 899
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 32.7 bits (73), Expect = 0.41 Identities = 18/41 (43%), Positives = 22/41 (53%) Frame = -3 Query: 438 QLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 890 KLKNRCGAGILPYQLMKPFSD------SGVTGMGIPNSTSI 924
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 32.3 bits (72), Expect = 0.54 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Frame = -3 Query: 432 KNRTGPAKFPYMLLYPNTSDHTG----QAEGLTARGIPNSISI 316 KNR G PY+LL P+ D T + + GIPNSISI Sbjct: 894 KNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 32.3 bits (72), Expect = 0.54 Identities = 18/41 (43%), Positives = 22/41 (53%) Frame = -3 Query: 438 QLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 907 KLKNRCGAGILPYQLMKPFSD------AGVTGMGIPNSTSI 941
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 32.0 bits (71), Expect = 0.70 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = -3 Query: 435 LKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 LKNR G Y LL P TS+H G+T G+P SISI Sbjct: 863 LKNRAGAGVVKYELLKP-TSEH-----GVTGMGVPYSISI 896
>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 582 Score = 31.2 bits (69), Expect = 1.2 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = +1 Query: 295 TTDVLRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 414 T DVL DG VR G +G+SR+V V EQH ELG Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQHHDELG 476
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -2 Query: 418 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 329 A P H A P L H +G HRQGHPE Sbjct: 231 APDAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -2 Query: 418 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 329 A P H A P L H +G HRQGHPE Sbjct: 231 APNAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = -3 Query: 432 KNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 +NR G PY+LL P + + A+ + GIPNSISI Sbjct: 895 RNRHGAGVVPYVLLRP-LNGNPMDAKTVMEMGIPNSISI 932
>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)| Length = 581 Score = 28.9 bits (63), Expect = 5.9 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Frame = -3 Query: 399 MLLYPNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMLLCYPCLLTPELACVC 235 M PN + HT Q AE A+ +P S S R L LC P + P AC Sbjct: 55 MTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKL 114 Query: 234 VCDRELCRCMNN 199 +C+ CM N Sbjct: 115 LCETVRGECMEN 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,748,779 Number of Sequences: 219361 Number of extensions: 1509290 Number of successful extensions: 3940 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3782 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3913 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
