ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHOB_KLEPN (P45605) Phosphate regulon transcriptional regulatory... 29 2.5
2LECS_VATMA (P81371) Seed lectin (VML) [Contains: Seed lectin alp... 28 4.3
3PHOB_SHIFL (P45607) Phosphate regulon transcriptional regulatory... 28 4.3
4PHOB_SHIDY (P45606) Phosphate regulon transcriptional regulatory... 28 4.3
5PHOB_ECOLI (P0AFJ5) Phosphate regulon transcriptional regulatory... 28 4.3
6PHOB_ECO57 (P0AFJ6) Phosphate regulon transcriptional regulatory... 28 4.3
7ADHA_CLOAB (Q04944) NADH-dependent butanol dehydrogenase A (EC 1... 28 5.7
8LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precur... 27 9.7
9PLSC_YEAST (P33333) Probable 1-acyl-sn-glycerol-3-phosphate acyl... 27 9.7

>PHOB_KLEPN (P45605) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 116 LIYLHGRHASKMYTKQTQLGKSWSSYLQISQVTVPASAFQLSGTLHSLGHDR 271
           L++    H  ++Y+++  L   W + + +   TV     +L   L   GHDR
Sbjct: 162 LLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEHSGHDR 213



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>LECS_VATMA (P81371) Seed lectin (VML) [Contains: Seed lectin alpha chain; Seed|
           lectin gamma chain; Seed lectin beta chain]
          Length = 240

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = +1

Query: 10  TSAKRISHSSSKDGRPRAHSLYS--YCSPNKTTR*TVTHLLTWTTCFKNVHQTNTTR*IL 183
           TS  ++  +  KDG+P  HSL    Y +P      +   + ++ T F             
Sbjct: 27  TSKGKLQLTKVKDGKPVDHSLGRALYAAPIHIWDDSTDRVASFATSFS-----------F 75

Query: 184 VILPPDQSGHRSGVSFSVIRNSTQP 258
           V+  PD+S    G++F +    TQP
Sbjct: 76  VVEAPDESKTADGIAFFLAPPDTQP 100



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>PHOB_SHIFL (P45607) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 116 LIYLHGRHASKMYTKQTQLGKSWSSYLQISQVTVPASAFQLSGTLHSLGHDR 271
           L++    H  ++Y+++  L   W + + +   TV     +L   L   GHDR
Sbjct: 162 LLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDR 213



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>PHOB_SHIDY (P45606) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 116 LIYLHGRHASKMYTKQTQLGKSWSSYLQISQVTVPASAFQLSGTLHSLGHDR 271
           L++    H  ++Y+++  L   W + + +   TV     +L   L   GHDR
Sbjct: 162 LLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDR 213



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>PHOB_ECOLI (P0AFJ5) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 116 LIYLHGRHASKMYTKQTQLGKSWSSYLQISQVTVPASAFQLSGTLHSLGHDR 271
           L++    H  ++Y+++  L   W + + +   TV     +L   L   GHDR
Sbjct: 162 LLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDR 213



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>PHOB_ECO57 (P0AFJ6) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 116 LIYLHGRHASKMYTKQTQLGKSWSSYLQISQVTVPASAFQLSGTLHSLGHDR 271
           L++    H  ++Y+++  L   W + + +   TV     +L   L   GHDR
Sbjct: 162 LLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDR 213



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>ADHA_CLOAB (Q04944) NADH-dependent butanol dehydrogenase A (EC 1.1.1.-) (BDH|
           I)
          Length = 389

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 221 ASAFQLSGTLHSLGHDRKWDDHPV 292
           AS+  ++G L SLG DRKW  HP+
Sbjct: 247 ASSLAINGLL-SLGKDRKWSCHPM 269



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>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC|
           1.13.11.12)
          Length = 941

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 185 SSYLQISQVTVPASAFQLSGTLHSLGHDRKWDDHPVPPVPIELDVP 322
           S +L++    + A   +   T+HS  H    DDH V     + DVP
Sbjct: 131 SLFLELVSSELEAKTGKKKATVHSYAHKVDDDDHGVVTYEADFDVP 176



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>PLSC_YEAST (P33333) Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase|
           (EC 2.3.1.51) (1-AGP acyltransferase) (1-AGPAT)
           (Lysophosphatidic acid acyltransferase) (LPAAT)
          Length = 303

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +2

Query: 131 GRHASKMYTKQTQLGKSWSSYLQISQVTVPASAFQLSGTLHSLGHDRKWDDHPVPPVPIE 310
           G  A K+  +     K       I+  T+P  A + +   H    ++K  + PVP V I 
Sbjct: 228 GEFAEKVRDQMVDTLKEIGYSPAINDTTLPPQAIEYAALQHDKKVNKKIKNEPVPSVSIS 287

Query: 311 LDV 319
            DV
Sbjct: 288 NDV 290


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,898,936
Number of Sequences: 219361
Number of extensions: 957763
Number of successful extensions: 2295
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2294
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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