ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK067082.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 2e-36
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
3dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
4dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
5gb|AY108559.1| Zea mays PCO061836 mRNA sequence 94 5e-16
6gb|AC025794.9| Mus musculus chromosome 19, clone RP23-62O7, comp... 44 0.40
7gb|AC130891.4| Homo sapiens 12 BAC RP11-97F22 (Roswell Park Canc... 40 6.2
8emb|AL162742.9| Human DNA sequence from clone RP11-127L20 on chr... 40 6.2
9gb|AC140121.4| Homo sapiens 12 BAC RP13-86N24 (Roswell Park Canc... 40 6.2
10dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 40 6.2
11emb|AL773508.6| Mouse DNA sequence from clone RP23-253D15 on chr... 40 6.2
12gb|AC079436.2| Rattus norvegicus strain Brown Norway chromosome ... 40 6.2

>dbj|AK067082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096E12, full
            insert sequence
          Length = 3335

 Score =  161 bits (81), Expect = 2e-36
 Identities = 150/173 (86%)
 Strand = Plus / Minus

                                                                        
Query: 279  ccagggaacgacctcccactgcttgtgacgagctccttgatggtcgcttggatgtccttg 338
            ||||| || ||||||||||| |||||||| || ||||||||||| |||||||||||||| 
Sbjct: 3022 ccaggaaatgacctcccactacttgtgacaagttccttgatggttgcttggatgtcctta 2963

                                                                        
Query: 339  tcctccagcatggactccagtggcacatgtaggcggaatctccagtaatgcttcgggtta 398
            || |||| ||  || |||| || ||||||||| ||||||||||| |||||||||||||||
Sbjct: 2962 tcgtccaacagcgaatccaatgtcacatgtagccggaatctccaataatgcttcgggtta 2903

                                                                 
Query: 399  gtggggtcgttgattgtttcctccgctgctggtcttgcggtgtatttgtcttt 451
            || ||||| ||||||||||||||   ||||||||||| |||||| ||||||||
Sbjct: 2902 gttgggtcattgattgtttcctcttttgctggtcttgtggtgtacttgtcttt 2850



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                            
Query: 372      cggaatctccagtaatgcttcgggttagtggggtcgttgattgtttcctccgctgctggt 431
                ||||||||||| ||||||||||||||||| ||||| ||||||||||||||   |||||||
Sbjct: 27913498 cggaatctccaataatgcttcgggttagttgggtcattgattgtttcctcttttgctggt 27913439

                                    
Query: 432      cttgcggtgtatttgtcttt 451
                |||| |||||| ||||||||
Sbjct: 27913438 cttgtggtgtacttgtcttt 27913419



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                            
Query: 279      ccagggaacgacctcccactgcttgtgacgagctccttgatggtcgcttggatgtccttg 338
                ||||| || ||||||||||| |||||||| || ||||||||||| |||||||||||||| 
Sbjct: 27914125 ccaggaaatgacctcccactacttgtgacaagttccttgatggttgcttggatgtcctta 27914066

                                                
Query: 339      tcctccagcatggactccagtggcacatgtag 370
                || |||| ||  || |||| || |||||||||
Sbjct: 27914065 tcgtccaacagcgaatccaatgtcacatgtag 27914034



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>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453E03
          Length = 159980

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                         
Query: 372   cggaatctccagtaatgcttcgggttagtggggtcgttgattgtttcctccgctgctggt 431
             ||||||||||| ||||||||||||||||| ||||| ||||||||||||||   |||||||
Sbjct: 76856 cggaatctccaataatgcttcgggttagttgggtcattgattgtttcctcttttgctggt 76797

                                 
Query: 432   cttgcggtgtatttgtcttt 451
             |||| |||||| ||||||||
Sbjct: 76796 cttgtggtgtacttgtcttt 76777



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                         
Query: 279   ccagggaacgacctcccactgcttgtgacgagctccttgatggtcgcttggatgtccttg 338
             ||||| || ||||||||||| |||||||| || ||||||||||| |||||||||||||| 
Sbjct: 77483 ccaggaaatgacctcccactacttgtgacaagttccttgatggttgcttggatgtcctta 77424

                                             
Query: 339   tcctccagcatggactccagtggcacatgtag 370
             || |||| ||  || |||| || |||||||||
Sbjct: 77423 tcgtccaacagcgaatccaatgtcacatgtag 77392



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>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1343_D04
          Length = 143407

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                        
Query: 372  cggaatctccagtaatgcttcgggttagtggggtcgttgattgtttcctccgctgctggt 431
            ||||||||||| ||||||||||||||||| ||||| ||||||||||||||   |||||||
Sbjct: 2832 cggaatctccaataatgcttcgggttagttgggtcattgattgtttcctcttttgctggt 2773

                                
Query: 432  cttgcggtgtatttgtcttt 451
            |||| |||||| ||||||||
Sbjct: 2772 cttgtggtgtacttgtcttt 2753



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                        
Query: 279  ccagggaacgacctcccactgcttgtgacgagctccttgatggtcgcttggatgtccttg 338
            ||||| || ||||||||||| |||||||| || ||||||||||| |||||||||||||| 
Sbjct: 3459 ccaggaaatgacctcccactacttgtgacaagttccttgatggttgcttggatgtcctta 3400

                                            
Query: 339  tcctccagcatggactccagtggcacatgtag 370
            || |||| ||  || |||| || |||||||||
Sbjct: 3399 tcgtccaacagcgaatccaatgtcacatgtag 3368



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>gb|AY108559.1| Zea mays PCO061836 mRNA sequence
          Length = 710

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                       
Query: 372 cggaatctccagtaatgcttcgggttagtggggtcgttgattgtttcctccgctgctggt 431
           ||||||||||| || ||||| |||||||||||||| |||||||||||||| |  ||||||
Sbjct: 694 cggaatctccaatagtgctttgggttagtggggtcattgattgtttcctctggcgctggt 635

                                  
Query: 432 cttgcggtgtatttgtctttcag 454
           |||| |||||| |||||||||||
Sbjct: 634 cttgtggtgtacttgtctttcag 612



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>gb|AC025794.9| Mus musculus chromosome 19, clone RP23-62O7, complete sequence
          Length = 242418

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 212    gttctttgtggtcctttgttgttcct 237
              ||||||||||| ||||||||||||||
Sbjct: 105785 gttctttgtggacctttgttgttcct 105810



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>gb|AC130891.4| Homo sapiens 12 BAC RP11-97F22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 32143

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    ccagtagttattattctcca 54
             ||||||||||||||||||||
Sbjct: 19111 ccagtagttattattctcca 19130



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>emb|AL162742.9| Human DNA sequence from clone RP11-127L20 on chromosome 10 Contains the
              gene for a novel glutathione-S-transferase gene(LOC119391),
              a novel gene (KIAA1754), the 5'end of a novel gene
              (FLJ35908), two novel genes and two CpG islands, complete
              sequence
          Length = 178428

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 345    agcatggactccagtggcac 364
              ||||||||||||||||||||
Sbjct: 143443 agcatggactccagtggcac 143462



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>gb|AC140121.4| Homo sapiens 12 BAC RP13-86N24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 39373

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    ccagtagttattattctcca 54
             ||||||||||||||||||||
Sbjct: 19842 ccagtagttattattctcca 19823



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>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020
          Length = 1824958

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    tcctccagcatggactccag 358
              ||||||||||||||||||||
Sbjct: 679534 tcctccagcatggactccag 679553



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>emb|AL773508.6| Mouse DNA sequence from clone RP23-253D15 on chromosome 2, complete
             sequence
          Length = 132091

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   tatctccctctcttcttctc 179
             ||||||||||||||||||||
Sbjct: 44695 tatctccctctcttcttctc 44676



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>gb|AC079436.2| Rattus norvegicus strain Brown Norway chromosome 4 clone RP31-108L19,
             complete sequence
          Length = 174622

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   atatctccctctcttcttct 178
             ||||||||||||||||||||
Sbjct: 72144 atatctccctctcttcttct 72163


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,970,006
Number of Sequences: 3902068
Number of extensions: 3970006
Number of successful extensions: 69339
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69300
Number of HSP's gapped (non-prelim): 39
length of query: 463
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 441
effective length of database: 17,147,199,772
effective search space: 7561915099452
effective search space used: 7561915099452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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