ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF200455.5| Homo sapiens chromosome 8 clone SCb-540n10 map p2... 38 7.9
2gb|AF233439.7| Homo sapiens chromosome 8 clones GS1-24F4, CTD-26... 38 7.9
3gb|AF205406.5| Homo sapiens chromosome 8 clone SCb-633e22 map p2... 38 7.9
4gb|AC145802.2| Xenopus tropicalis clone CH216-80C17, complete se... 38 7.9
5gb|AC099524.5| Homo sapiens chromosome 16 clone RP11-960L18, com... 38 7.9
6gb|AC112156.4| Mus musculus BAC clone RP24-103D6 from chromosome... 38 7.9
7ref|NM_001013253.1| Homo sapiens lymphocyte-specific protein 1 (... 38 7.9
8gb|AC051649.21| Homo sapiens chromosome 11, clone RP11-534I22, c... 38 7.9
9emb|BX248357.1| Corynebacterium diphtheriae gravis NCTC13129, co... 38 7.9
10gb|AC079018.10| Homo sapiens chromosome 8, clone RP11-161B1, com... 38 7.9
11emb|CR625395.1| full-length cDNA clone CS0DI005YO10 of Placenta ... 38 7.9
12emb|CR622813.1| full-length cDNA clone CS0DI028YL12 of Placenta ... 38 7.9
13emb|CR604737.1| full-length cDNA clone CS0DE002YL14 of Placenta ... 38 7.9
14emb|CR603863.1| full-length cDNA clone CS0DI004YE02 of Placenta ... 38 7.9
15emb|CR601725.1| full-length cDNA clone CS0DI044YK18 of Placenta ... 38 7.9
16dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 38 7.9
17gb|AC098966.3| Homo sapiens chromosome 16 clone RP11-465H19, com... 38 7.9
18gb|AC156553.17| Mus musculus chromosome 8, clone RP23-106I21, co... 38 7.9
19emb|AL139300.6|CNS01DXG Human chromosome 14 DNA sequence BAC R-8... 38 7.9
20dbj|AP006462.2| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 7.9
21gb|AC114589.30| Mus musculus chromosome 8, clone RP23-365O13, co... 38 7.9
22emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 38 7.9
23gb|AF314060.3| Homo sapiens chromosome 8 clone XXpac-GS1-i2046 m... 38 7.9
24emb|AL844844.8| Mouse DNA sequence from clone RP23-103D7 on chro... 38 7.9
25emb|AL833797.6| Mouse DNA sequence from clone RP23-89B11 on chro... 38 7.9

>gb|AF200455.5| Homo sapiens chromosome 8 clone SCb-540n10 map p22-p21, complete
             sequence
          Length = 158653

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 54    taccttgctcaccatcatt 72
             |||||||||||||||||||
Sbjct: 24883 taccttgctcaccatcatt 24865



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>gb|AF233439.7| Homo sapiens chromosome 8 clones GS1-24F4, CTD-2629I16 map p23.1,
              complete sequences
          Length = 231283

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 54     taccttgctcaccatcatt 72
              |||||||||||||||||||
Sbjct: 161974 taccttgctcaccatcatt 161956



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>gb|AF205406.5| Homo sapiens chromosome 8 clone SCb-633e22 map p23.1, complete sequence
          Length = 168907

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 54     taccttgctcaccatcatt 72
              |||||||||||||||||||
Sbjct: 114561 taccttgctcaccatcatt 114543



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>gb|AC145802.2| Xenopus tropicalis clone CH216-80C17, complete sequence
          Length = 163910

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    agacactcatcatatctgg 34
             |||||||||||||||||||
Sbjct: 84184 agacactcatcatatctgg 84166



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>gb|AC099524.5| Homo sapiens chromosome 16 clone RP11-960L18, complete sequence
          Length = 184518

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    ctgggcacagcggccagca 49
             |||||||||||||||||||
Sbjct: 22099 ctgggcacagcggccagca 22117



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>gb|AC112156.4| Mus musculus BAC clone RP24-103D6 from chromosome 2, complete sequence
          Length = 175208

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 53     gtaccttgctcaccatcat 71
              |||||||||||||||||||
Sbjct: 113991 gtaccttgctcaccatcat 113973



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>ref|NM_001013253.1| Homo sapiens lymphocyte-specific protein 1 (LSP1), transcript
           variant 2, mRNA
          Length = 1842

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 31  ctgggcacagcggccagcaagcg 53
           ||||||| |||||||||||||||
Sbjct: 164 ctgggcagagcggccagcaagcg 186



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>gb|AC051649.21| Homo sapiens chromosome 11, clone RP11-534I22, complete sequence
          Length = 188519

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 31     ctgggcacagcggccagcaagcg 53
              ||||||| |||||||||||||||
Sbjct: 129181 ctgggcagagcggccagcaagcg 129159



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>emb|BX248357.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
              4/8
          Length = 349535

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 69     cattgatccaaatcatccg 87
              |||||||||||||||||||
Sbjct: 195511 cattgatccaaatcatccg 195493



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>gb|AC079018.10| Homo sapiens chromosome 8, clone RP11-161B1, complete sequence
          Length = 168702

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 54    taccttgctcaccatcatt 72
             |||||||||||||||||||
Sbjct: 95791 taccttgctcaccatcatt 95773



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>emb|CR625395.1| full-length cDNA clone CS0DI005YO10 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1741

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 31  ctgggcacagcggccagcaagcg 53
           ||||||| |||||||||||||||
Sbjct: 164 ctgggcagagcggccagcaagcg 186



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>emb|CR622813.1| full-length cDNA clone CS0DI028YL12 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1721

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 31  ctgggcacagcggccagcaagcg 53
           ||||||| |||||||||||||||
Sbjct: 145 ctgggcagagcggccagcaagcg 167



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>emb|CR604737.1| full-length cDNA clone CS0DE002YL14 of Placenta of Homo sapiens
           (human)
          Length = 1696

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 31  ctgggcacagcggccagcaagcg 53
           ||||||| |||||||||||||||
Sbjct: 107 ctgggcagagcggccagcaagcg 129



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>emb|CR603863.1| full-length cDNA clone CS0DI004YE02 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1734

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 31  ctgggcacagcggccagcaagcg 53
           ||||||| |||||||||||||||
Sbjct: 142 ctgggcagagcggccagcaagcg 164



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>emb|CR601725.1| full-length cDNA clone CS0DI044YK18 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1726

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 31  ctgggcacagcggccagcaagcg 53
           ||||||| |||||||||||||||
Sbjct: 116 ctgggcagagcggccagcaagcg 138



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>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102
          Length = 1779707

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 133    acatacggtacatacatcc 151
              |||||||||||||||||||
Sbjct: 149403 acatacggtacatacatcc 149385



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>gb|AC098966.3| Homo sapiens chromosome 16 clone RP11-465H19, complete sequence
          Length = 164925

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    ctgggcacagcggccagca 49
             |||||||||||||||||||
Sbjct: 76996 ctgggcacagcggccagca 77014



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>gb|AC156553.17| Mus musculus chromosome 8, clone RP23-106I21, complete sequence
          Length = 211915

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 19    cactcatcatatctgggca 37
             |||||||||||||||||||
Sbjct: 36649 cactcatcatatctgggca 36667



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>emb|AL139300.6|CNS01DXG Human chromosome 14 DNA sequence BAC R-894P9 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 191563

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 30     tctgggcacagcggccagc 48
              |||||||||||||||||||
Sbjct: 139466 tctgggcacagcggccagc 139448



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>dbj|AP006462.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-813O18, complete
             sequence
          Length = 98815

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 31    ctgggcacagcggccagcaagcg 53
             ||||||| |||||||||||||||
Sbjct: 63404 ctgggcagagcggccagcaagcg 63426



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>gb|AC114589.30| Mus musculus chromosome 8, clone RP23-365O13, complete sequence
          Length = 213866

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 19     cactcatcatatctgggca 37
              |||||||||||||||||||
Sbjct: 210468 cactcatcatatctgggca 210486



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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 130     gacacatacggtacataca 148
               |||||||||||||||||||
Sbjct: 2944782 gacacatacggtacataca 2944764



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>gb|AF314060.3| Homo sapiens chromosome 8 clone XXpac-GS1-i2046 map p23.1, complete
             sequence
          Length = 79317

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 54    taccttgctcaccatcatt 72
             |||||||||||||||||||
Sbjct: 35639 taccttgctcaccatcatt 35621



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>emb|AL844844.8| Mouse DNA sequence from clone RP23-103D7 on chromosome 2, complete
              sequence
          Length = 213953

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 53     gtaccttgctcaccatcat 71
              |||||||||||||||||||
Sbjct: 151450 gtaccttgctcaccatcat 151468



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>emb|AL833797.6| Mouse DNA sequence from clone RP23-89B11 on chromosome 2, complete
             sequence
          Length = 165400

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 107   tggctgcctgcccagttgaaatc 129
             ||||||| |||||||||||||||
Sbjct: 69301 tggctgcatgcccagttgaaatc 69323


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 975,433
Number of Sequences: 3902068
Number of extensions: 975433
Number of successful extensions: 86184
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86108
Number of HSP's gapped (non-prelim): 76
length of query: 164
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 142
effective length of database: 17,147,199,772
effective search space: 2434902367624
effective search space used: 2434902367624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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