>GID_BACSK (Q5WFP8) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 436

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = -2

Query: 176 SRLTCGRNLKGTALINTVDILYTRAGHFDGAFLHCKTSVTACTYGDVILDVND 18
           + L C  +L+G +L N V +L     H D   +           G + +D +D
Sbjct: 50  AELVCSNSLRGNSLANAVGVLKEEMRHLDSVIIKAADEAAVPAGGALAVDRHD 102

>GID_STAES (Q8CPH2) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 435

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -2

Query: 176 SRLTCGRNLKGTALINTVDILYTRAGHFDGAFLHCKTSVTACTYGDVILDVND 18
           + L C  +L+G AL N V +L     H D   +           G + +D +D
Sbjct: 48  AELVCSNSLRGNALTNAVGVLKEEMRHLDSLIITSADKARVPAGGALAVDRHD 100

>GID_STAEQ (Q5HPU1) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 435

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -2

Query: 176 SRLTCGRNLKGTALINTVDILYTRAGHFDGAFLHCKTSVTACTYGDVILDVND 18
           + L C  +L+G AL N V +L     H D   +           G + +D +D
Sbjct: 48  AELVCSNSLRGNALTNAVGVLKEEMRHLDSLIITSADKARVPAGGALAVDRHD 100

>RLM1_YEAST (Q12224) Transcription factor RLM1|
          Length = 676

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = +2

Query: 38  HLHKYKPLLKFYSVKMPRQNDQRVCIKYLPC*SMPCLSNSYHRSAYSAGGARLSTMSGPF 217
           HL + KP     S    +Q  Q +        S P  S+ Y+ +  S+  +  STM  P 
Sbjct: 191 HLKRLKPDPLQISRTPQQQQQQNI--------SRPYHSSMYNLNQPSSSSSSPSTMDFPK 242

Query: 218 SPATENSSGTGTP 256
            P+ +NSS  G P
Sbjct: 243 LPSFQNSSFNGRP 255


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,465,547
Number of Sequences: 219361
Number of extensions: 590091
Number of successful extensions: 1841
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1838
length of database: 80,573,946
effective HSP length: 61
effective length of database: 67,192,925
effective search space used: 1612630200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)