ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 125 7e-26
2dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic D... 125 7e-26
3dbj|AK065611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 7e-26
4ref|XM_849931.1| PREDICTED: Canis familiaris similar to G2/mitot... 42 0.85
5emb|BX511157.10| Zebrafish DNA sequence from clone DKEY-197M14 i... 42 0.85
6ref|XM_675903.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 3.3
7gb|AC133189.3| Mus musculus BAC clone RP23-354M9 from chromosome... 40 3.3
8dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.3

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  125 bits (63), Expect = 7e-26
 Identities = 75/79 (94%)
 Strand = Plus / Plus

                                                                            
Query: 180      ccggcggggcgaggttgagcaccatgtcgggccccttctccccggcgacggagaactcgt 239
                ||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 29000693 ccggcggcgcgaggttgagcaccatgtcggggcccttgtcgccggcgacggagaactcgt 29000752

                                   
Query: 240      cgggcaccggcacgcccag 258
                |||||||||||||||||||
Sbjct: 29000753 cgggcaccggcacgcccag 29000771



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>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0596H10
          Length = 166570

 Score =  125 bits (63), Expect = 7e-26
 Identities = 75/79 (94%)
 Strand = Plus / Plus

                                                                         
Query: 180   ccggcggggcgaggttgagcaccatgtcgggccccttctccccggcgacggagaactcgt 239
             ||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 15680 ccggcggcgcgaggttgagcaccatgtcggggcccttgtcgccggcgacggagaactcgt 15739

                                
Query: 240   cgggcaccggcacgcccag 258
             |||||||||||||||||||
Sbjct: 15740 cgggcaccggcacgcccag 15758



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>dbj|AK065611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I23, full
            insert sequence
          Length = 2957

 Score =  125 bits (63), Expect = 7e-26
 Identities = 75/79 (94%)
 Strand = Plus / Minus

                                                                        
Query: 180  ccggcggggcgaggttgagcaccatgtcgggccccttctccccggcgacggagaactcgt 239
            ||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 2650 ccggcggcgcgaggttgagcaccatgtcggggcccttgtcgccggcgacggagaactcgt 2591

                               
Query: 240  cgggcaccggcacgcccag 258
            |||||||||||||||||||
Sbjct: 2590 cgggcaccggcacgcccag 2572



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>ref|XM_849931.1| PREDICTED: Canis familiaris similar to G2/mitotic-specific cyclin
           B1 (LOC489180), mRNA
          Length = 929

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 17  catcattcacatcaagaattacatc 41
           |||||||||| ||||||||||||||
Sbjct: 105 catcattcacctcaagaattacatc 81



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>emb|BX511157.10| Zebrafish DNA sequence from clone DKEY-197M14 in linkage group 5,
             complete sequence
          Length = 159528

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    tgaagttttacagtgtaaaaa 83
             |||||||||||||||||||||
Sbjct: 11082 tgaagttttacagtgtaaaaa 11062



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>ref|XM_675903.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7726.2), mRNA
          Length = 3714

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 138  tgccgtgcctttcaaattcc 157
            ||||||||||||||||||||
Sbjct: 2280 tgccgtgcctttcaaattcc 2299



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>gb|AC133189.3| Mus musculus BAC clone RP23-354M9 from chromosome 15, complete sequence
          Length = 198577

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     tctcctctttgccatcattc 24
             ||||||||||||||||||||
Sbjct: 16504 tctcctctttgccatcattc 16485



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 237     cgtcgggcaccggcacgccc 256
               ||||||||||||||||||||
Sbjct: 2756643 cgtcgggcaccggcacgccc 2756662


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,114,519
Number of Sequences: 3902068
Number of extensions: 2114519
Number of successful extensions: 39097
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39002
Number of HSP's gapped (non-prelim): 95
length of query: 258
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 236
effective length of database: 17,147,199,772
effective search space: 4046739146192
effective search space used: 4046739146192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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