ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DRL21_ARATH (Q9LRR5) Putative disease resistance protein At3g14460 30 1.6
2IRX6_MOUSE (Q9ER75) Iroquois-class homeodomain protein IRX-6 (Ir... 29 2.6
3UL52_SHV21 (P14346) Helicase/primase complex protein (Probable D... 29 3.5
4FA5_HUMAN (P12259) Coagulation factor V precursor (Activated pro... 29 3.5
5PA21B_CANFA (P06596) Phospholipase A2 precursor (EC 3.1.1.4) (Ph... 28 5.9
6CP2D9_MOUSE (P11714) Cytochrome P450 2D9 (EC 1.14.14.1) (CYPIID9... 28 5.9
7WNT11_XENLA (P49893) Protein Wnt-11 precursor (XWnt-11) 28 7.7
8ATR_ARATH (Q9FKS4) Serine/threonine-protein kinase ATR (EC 2.7.1... 28 7.7

>DRL21_ARATH (Q9LRR5) Putative disease resistance protein At3g14460|
          Length = 1424

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 112  GLHNTDPIEKSAPDRCDKLQVPVWQQVNRLRLLGVQACT 228
            G H+T  IE      CDKLQ+ + + +  L  L + +C+
Sbjct: 1356 GFHDTKAIETMEISGCDKLQISIDEDLPPLSCLRISSCS 1394



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>IRX6_MOUSE (Q9ER75) Iroquois-class homeodomain protein IRX-6 (Iroquois|
           homeobox protein 6) (Homeodomain protein IRXB3)
          Length = 438

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 209 SSLNRLTCCQTGTWSLSQRSGADFSIGSVLCNPY 108
           S+ +  TCC+T   S+S  + A  S  ++ C PY
Sbjct: 19  SASSSATCCETAPRSVSDVASASTSASTLCCTPY 52



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>UL52_SHV21 (P14346) Helicase/primase complex protein (Probable DNA replication|
           gene 56 protein)
          Length = 835

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 20  TEPDSTYVLTDRLTSTGDHK--HRNLHHCYIY 109
           T+ DS  ++TD LT T  +   +  LH+CYIY
Sbjct: 17  TDGDSAEIITDILTGTDTNAFIYSVLHNCYIY 48



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>FA5_HUMAN (P12259) Coagulation factor V precursor (Activated protein C|
           cofactor) [Contains: Coagulation factor V heavy chain;
           Coagulation factor V light chain]
          Length = 2224

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 79  TSQSTPLLHIYGLH---NTDPIEKSAPDRCDKLQVPVWQQVNRLRLLGVQACTARSAE 243
           T+  +PL H+ G +   N+   E S+P   D ++ P+   V  +RLL + A   +S E
Sbjct: 804 TTAGSPLRHLIGKNSVLNSSTAEHSSPYSEDPIEDPLQPDVTGIRLLSLGAGEFKSQE 861



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>PA21B_CANFA (P06596) Phospholipase A2 precursor (EC 3.1.1.4)|
           (Phosphatidylcholine 2-acylhydrolase) (Group IB
           phospholipase A2)
          Length = 146

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = -2

Query: 188 CCQTGTWSLSQRSGADFSIGSVLCNPYICSSGVDCDVYDLL*KLTCLSKHMYCQAPCSPC 9
           CCQT     S+    D S   +L NPY       C   ++    TC SK+  CQA    C
Sbjct: 66  CCQTHDHCYSEAKKLD-SCKFLLDNPYTKIYSYSCSGSEI----TCSSKNKDCQAFICNC 120

Query: 8   E 6
           +
Sbjct: 121 D 121



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>CP2D9_MOUSE (P11714) Cytochrome P450 2D9 (EC 1.14.14.1) (CYPIID9)|
           (P450-16-alpha) (CA) (Testosterone 16-alpha hydroxylase)
          Length = 504

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +2

Query: 236 QPRPSSSGVYTILRHP-PYDGC 298
           QP+PS+SGVY IL  P PY  C
Sbjct: 475 QPQPSNSGVYGILVAPSPYQLC 496



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>WNT11_XENLA (P49893) Protein Wnt-11 precursor (XWnt-11)|
          Length = 353

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = -2

Query: 176 GTWSLSQRSGADFSIGSVLCNPYICSSGVDCDVYDLL*KLTCLSKHMYCQAPCSPCE 6
           G++    R     S+GS  CN   C  G +     ++ +  C   H  C   C  CE
Sbjct: 289 GSYGTQDRLCNKTSVGSDSCNLMCCGRGYNAYTETIVERCQC-KYHWCCYVMCKKCE 344



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>ATR_ARATH (Q9FKS4) Serine/threonine-protein kinase ATR (EC 2.7.11.1)|
           (DNA-repair protein ATR) (AtATR) (Ataxia
           telangiectasia-mutated and Rad3-related homolog)
           (Rad3-like protein) (AtRAD3)
          Length = 2702

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 215 TPSSLNRLTCCQTGTWS-LSQRSGADFSIGS 126
           TPSSL +  C   G W+ L  + G+DF I S
Sbjct: 583 TPSSLVKSKCLSVGIWTKLGLQDGSDFDIFS 613


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,910,667
Number of Sequences: 219361
Number of extensions: 897349
Number of successful extensions: 2029
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2029
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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