ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC009847.9| Drosophila melanogaster clone BACR03L10, complete... 44 0.25
2gb|AE003785.4| Drosophila melanogaster chromosome 2R, section 4 ... 44 0.25
3emb|AL139278.12| Human DNA sequence from clone RP4-639D23 on chr... 42 1.0
4ref|NM_022003.1| Homo sapiens FXYD domain containing ion transpo... 40 4.0
5gb|BC018652.2| Homo sapiens FXYD domain containing ion transport... 40 4.0
6gb|AY358976.1| Homo sapiens clone DNA57693 FXYD6 (UNQ521) mRNA, ... 40 4.0
7emb|AL832811.1|HSM804122 Homo sapiens mRNA; cDNA DKFZp667P0423 (... 40 4.0
8emb|CR858829.1| Pongo pygmaeus mRNA; cDNA DKFZp468P1427 (from cl... 40 4.0
9emb|AL136699.1|HSM801667 Homo sapiens mRNA; cDNA DKFZp564I1782 (... 40 4.0
10gb|AC011490.7| Homo sapiens chromosome 19 clone CTB-179L3, compl... 40 4.0
11emb|CR625268.1| full-length cDNA clone CS0DB001YB19 of Neuroblas... 40 4.0
12emb|CR623064.1| full-length cDNA clone CS0DF032YM19 of Fetal bra... 40 4.0
13emb|CR618856.1| full-length cDNA clone CS0DA004YH16 of Neuroblas... 40 4.0
14emb|CR618485.1| full-length cDNA clone CL0BB017ZF02 of Neuroblas... 40 4.0
15emb|CR617323.1| full-length cDNA clone CS0DF011YP12 of Fetal bra... 40 4.0
16emb|CR614352.1| full-length cDNA clone CS0DF026YG15 of Fetal bra... 40 4.0
17emb|CR611517.1| full-length cDNA clone CS0DF004YG14 of Fetal bra... 40 4.0
18emb|CR611120.1| full-length cDNA clone CS0DF022YM03 of Fetal bra... 40 4.0
19emb|CR609230.1| full-length cDNA clone CS0DF002YD24 of Fetal bra... 40 4.0
20emb|CR608496.1| full-length cDNA clone CS0DN001YJ16 of Adult bra... 40 4.0
21dbj|AK092198.1| Homo sapiens cDNA FLJ34879 fis, clone NT2NE2015712 40 4.0
22emb|CR606899.1| full-length cDNA clone CS0DF015YH21 of Fetal bra... 40 4.0
23emb|CR604957.1| full-length cDNA clone CS0DF034YI11 of Fetal bra... 40 4.0
24emb|CR604290.1| full-length cDNA clone CS0DA007YH20 of Neuroblas... 40 4.0
25emb|CR603146.1| full-length cDNA clone CS0DF019YI20 of Fetal bra... 40 4.0
26emb|CR600841.1| full-length cDNA clone CS0DF024YH23 of Fetal bra... 40 4.0
27emb|CR597623.1| full-length cDNA clone CS0DI029YG18 of Placenta ... 40 4.0
28emb|CR593024.1| full-length cDNA clone CS0DC027YI13 of Neuroblas... 40 4.0
29dbj|AB169678.1| Macaca fascicularis brain cDNA, clone: QccE-1716... 40 4.0
30dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
31gb|BC093040.1| Homo sapiens FXYD domain containing ion transport... 40 4.0
32dbj|AP003512.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
33dbj|AP000757.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 4.0
34gb|AC005335.1|AC005335 Homo sapiens chromosome 19, cosmid R34296... 40 4.0

>gb|AC009847.9| Drosophila melanogaster clone BACR03L10, complete sequence
          Length = 180498

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 4      cactcacaagggctgcacggag 25
              ||||||||||||||||||||||
Sbjct: 126328 cactcacaagggctgcacggag 126307



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>gb|AE003785.4| Drosophila melanogaster chromosome 2R, section 4 of 73 of the complete
              sequence
          Length = 301132

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 4      cactcacaagggctgcacggag 25
              ||||||||||||||||||||||
Sbjct: 206634 cactcacaagggctgcacggag 206655



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>emb|AL139278.12| Human DNA sequence from clone RP4-639D23 on chromosome Xp21.1-21.3
             Contains part of the DMD gene for dystrophin (muscular
             dystrophy, Duchenne and Becker types), complete sequence
          Length = 95866

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   tacatatatatgggttacaca 121
             |||||||||||||||||||||
Sbjct: 65632 tacatatatatgggttacaca 65612



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>ref|NM_022003.1| Homo sapiens FXYD domain containing ion transport regulator 6
            (FXYD6), mRNA
          Length = 1677

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1490 caagggctgcacggagcctg 1471



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>gb|BC018652.2| Homo sapiens FXYD domain containing ion transport regulator 6, mRNA
            (cDNA clone MGC:2369 IMAGE:2822864), complete cds
          Length = 1850

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1649 caagggctgcacggagcctg 1630



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>gb|AY358976.1| Homo sapiens clone DNA57693 FXYD6 (UNQ521) mRNA, complete cds
          Length = 1657

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1475 caagggctgcacggagcctg 1456



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>emb|AL832811.1|HSM804122 Homo sapiens mRNA; cDNA DKFZp667P0423 (from clone DKFZp667P0423)
          Length = 1761

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1557 caagggctgcacggagcctg 1538



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>emb|CR858829.1| Pongo pygmaeus mRNA; cDNA DKFZp468P1427 (from clone DKFZp468P1427)
          Length = 1762

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1563 caagggctgcacggagcctg 1544



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>emb|AL136699.1|HSM801667 Homo sapiens mRNA; cDNA DKFZp564I1782 (from clone DKFZp564I1782)
          Length = 1647

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1455 caagggctgcacggagcctg 1436



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>gb|AC011490.7| Homo sapiens chromosome 19 clone CTB-179L3, complete sequence
          Length = 115289

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    atccaccttatgatgggtgt 298
              ||||||||||||||||||||
Sbjct: 104325 atccaccttatgatgggtgt 104344



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>emb|CR625268.1| full-length cDNA clone CS0DB001YB19 of Neuroblastoma Cot
            10-normalized of Homo sapiens (human)
          Length = 1354

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1187 caagggctgcacggagcctg 1168



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>emb|CR623064.1| full-length cDNA clone CS0DF032YM19 of Fetal brain of Homo sapiens
            (human)
          Length = 1656

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1497 caagggctgcacggagcctg 1478



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>emb|CR618856.1| full-length cDNA clone CS0DA004YH16 of Neuroblastoma of Homo sapiens
            (human)
          Length = 1592

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1431 caagggctgcacggagcctg 1412



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>emb|CR618485.1| full-length cDNA clone CL0BB017ZF02 of Neuroblastoma of Homo sapiens
            (human)
          Length = 1602

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1421 caagggctgcacggagcctg 1402



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>emb|CR617323.1| full-length cDNA clone CS0DF011YP12 of Fetal brain of Homo sapiens
            (human)
          Length = 1797

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1613 caagggctgcacggagcctg 1594



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>emb|CR614352.1| full-length cDNA clone CS0DF026YG15 of Fetal brain of Homo sapiens
            (human)
          Length = 1592

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1496 caagggctgcacggagcctg 1477



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>emb|CR611517.1| full-length cDNA clone CS0DF004YG14 of Fetal brain of Homo sapiens
            (human)
          Length = 1657

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1498 caagggctgcacggagcctg 1479



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>emb|CR611120.1| full-length cDNA clone CS0DF022YM03 of Fetal brain of Homo sapiens
            (human)
          Length = 1680

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1497 caagggctgcacggagcctg 1478



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>emb|CR609230.1| full-length cDNA clone CS0DF002YD24 of Fetal brain of Homo sapiens
            (human)
          Length = 1663

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1497 caagggctgcacggagcctg 1478



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>emb|CR608496.1| full-length cDNA clone CS0DN001YJ16 of Adult brain of Homo sapiens
            (human)
          Length = 1584

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1431 caagggctgcacggagcctg 1412



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>dbj|AK092198.1| Homo sapiens cDNA FLJ34879 fis, clone NT2NE2015712
          Length = 2540

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 2358 caagggctgcacggagcctg 2339



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>emb|CR606899.1| full-length cDNA clone CS0DF015YH21 of Fetal brain of Homo sapiens
            (human)
          Length = 1666

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1514 caagggctgcacggagcctg 1495



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>emb|CR604957.1| full-length cDNA clone CS0DF034YI11 of Fetal brain of Homo sapiens
            (human)
          Length = 1562

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1431 caagggctgcacggagcctg 1412



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>emb|CR604290.1| full-length cDNA clone CS0DA007YH20 of Neuroblastoma of Homo sapiens
            (human)
          Length = 1585

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1431 caagggctgcacggagcctg 1412



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>emb|CR603146.1| full-length cDNA clone CS0DF019YI20 of Fetal brain of Homo sapiens
            (human)
          Length = 1653

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1497 caagggctgcacggagcctg 1478



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>emb|CR600841.1| full-length cDNA clone CS0DF024YH23 of Fetal brain of Homo sapiens
            (human)
          Length = 1664

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1497 caagggctgcacggagcctg 1478



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>emb|CR597623.1| full-length cDNA clone CS0DI029YG18 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1729

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1576 caagggctgcacggagcctg 1557



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>emb|CR593024.1| full-length cDNA clone CS0DC027YI13 of Neuroblastoma Cot
            25-normalized of Homo sapiens (human)
          Length = 1634

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1476 caagggctgcacggagcctg 1457



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>dbj|AB169678.1| Macaca fascicularis brain cDNA, clone: QccE-17168, similar to human
            FXYD domain containing ion transport regulator 6(FXYD6),
            mRNA, RefSeq: NM_022003.1
          Length = 1755

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1552 caagggctgcacggagcctg 1533



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 30       acagtacatatgttttgaca 49
                ||||||||||||||||||||
Sbjct: 16056633 acagtacatatgttttgaca 16056652



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>gb|BC093040.1| Homo sapiens FXYD domain containing ion transport regulator 6, mRNA
            (cDNA clone MGC:110994 IMAGE:6526843), complete cds
          Length = 1677

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   caagggctgcacggagcctg 29
            ||||||||||||||||||||
Sbjct: 1480 caagggctgcacggagcctg 1461



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>dbj|AP003512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0618D11
          Length = 150103

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    acagtacatatgttttgaca 49
             ||||||||||||||||||||
Sbjct: 85362 acagtacatatgttttgaca 85381



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>dbj|AP000757.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-728F11, complete
             sequences
          Length = 184926

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    caagggctgcacggagcctg 29
             ||||||||||||||||||||
Sbjct: 81594 caagggctgcacggagcctg 81613



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>gb|AC005335.1|AC005335 Homo sapiens chromosome 19, cosmid R34296, complete sequence
          Length = 47003

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   atccaccttatgatgggtgt 298
             ||||||||||||||||||||
Sbjct: 47002 atccaccttatgatgggtgt 46983


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,387,507
Number of Sequences: 3902068
Number of extensions: 2387507
Number of successful extensions: 34060
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34017
Number of HSP's gapped (non-prelim): 43
length of query: 303
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 281
effective length of database: 17,147,199,772
effective search space: 4818363135932
effective search space used: 4818363135932
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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