Clone Name | rbastl06h10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.47 Identities = 27/29 (93%) Strand = Plus / Minus Query: 43 caaatatgcgccacagggatacaagtaca 71 ||||| || |||||||||||||||||||| Sbjct: 21893967 caaatttgtgccacagggatacaagtaca 21893939
>dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1114B07 Length = 148060 Score = 42.1 bits (21), Expect = 0.47 Identities = 27/29 (93%) Strand = Plus / Minus Query: 43 caaatatgcgccacagggatacaagtaca 71 ||||| || |||||||||||||||||||| Sbjct: 123260 caaatttgtgccacagggatacaagtaca 123232
>gb|AC162520.7| Mus musculus chromosome 5, clone RP24-118C7, complete sequence Length = 187196 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 acaaatacaatacaatatag 32 |||||||||||||||||||| Sbjct: 108866 acaaatacaatacaatatag 108847
>gb|AC138395.8| Mus musculus chromosome 3, clone RP24-128I24, complete sequence Length = 171020 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 tattctgtagatagatagat 136 |||||||||||||||||||| Sbjct: 138337 tattctgtagatagatagat 138356
>gb|AC009395.7| Drosophila melanogaster clone BACR01D01, complete sequence Length = 189116 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 acaaatacaatacaatatagataa 36 |||||||||||| ||||||||||| Sbjct: 23926 acaaatacaatataatatagataa 23903
>gb|AC009736.10| Drosophila melanogaster clone BACR10A04, complete sequence Length = 165489 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 acaaatacaatacaatatagataa 36 |||||||||||| ||||||||||| Sbjct: 100821 acaaatacaatataatatagataa 100798
>emb|AL451044.7| Human DNA sequence from clone RP11-293K19 on chromosome 1 Contains part of the DOCK7 gene for dedicator of cytokinesis 7, complete sequence Length = 127370 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 acaaatacaatacaatatag 32 |||||||||||||||||||| Sbjct: 86414 acaaatacaatacaatatag 86395
>gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, complete sequence Length = 153684 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 tattctgtagatagatagat 136 |||||||||||||||||||| Sbjct: 78720 tattctgtagatagatagat 78739
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 gagatgataccatcagaatg 103 |||||||||||||||||||| Sbjct: 1860163 gagatgataccatcagaatg 1860144
>gb|AE003722.4| Drosophila melanogaster chromosome 3R, section 60 of 118 of the complete sequence Length = 221164 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 acaaatacaatacaatatagataa 36 |||||||||||| ||||||||||| Sbjct: 168059 acaaatacaatataatatagataa 168036
>gb|AC009343.9| Drosophila melanogaster clone BACR08L17, complete sequence Length = 182492 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 ccacagggatacaagtaca 71 ||||||||||||||||||| Sbjct: 132511 ccacagggatacaagtaca 132493
>gb|AF314745.1| Deltistes luxatus clone Dlu4303 microsatellite sequence Length = 433 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 tagatagatagatgccgac 142 ||||||||||||||||||| Sbjct: 278 tagatagatagatgccgac 296
>gb|AC150674.4| Bos taurus BAC CH240-443I13 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 194860 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 atcagaatgcaactggatg 113 ||||||||||||||||||| Sbjct: 144904 atcagaatgcaactggatg 144922
>gb|AC016023.8| Drosophila melanogaster clone BACR16F16, complete sequence Length = 186404 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 tgtgtgcggggacaaatac 20 ||||||||||||||||||| Sbjct: 152066 tgtgtgcggggacaaatac 152084
>gb|AC009391.16| Drosophila melanogaster clone BACR21I23, complete sequence Length = 189254 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 tgtgtgcggggacaaatac 20 ||||||||||||||||||| Sbjct: 16861 tgtgtgcggggacaaatac 16879
>gb|BT012905.1| Lycopersicon esculentum clone 114022F, mRNA sequence Length = 2090 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 atgcaactggatgccttat 119 ||||||||||||||||||| Sbjct: 227 atgcaactggatgccttat 245
>gb|AC073644.10| Homo sapiens BAC clone RP11-519M4 from 7, complete sequence Length = 174359 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 gatccagtgtggagatgat 91 ||||||||||||||||||| Sbjct: 113022 gatccagtgtggagatgat 113004
>gb|AC146033.2| Pan troglodytes BAC clone RP43-14B18 from 7, complete sequence Length = 170094 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 14 caaatacaatacaatatagataa 36 ||||||||||||||||| ||||| Sbjct: 32265 caaatacaatacaatattgataa 32287
>gb|AC092062.4| Homo sapiens BAC clone RP11-505F9 from 7, complete sequence Length = 14200 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 114 ccttattctgtagatagatagat 136 ||||||| ||||||||||||||| Sbjct: 6914 ccttattgtgtagatagatagat 6892
>gb|AC142287.1| Pan troglodytes BAC clone RP43-169H12 from 7, complete sequence Length = 134577 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 14 caaatacaatacaatatagataa 36 ||||||||||||||||| ||||| Sbjct: 19150 caaatacaatacaatattgataa 19128
>emb|AL691517.20| Human DNA sequence from clone XXyac-12DB5 on chromosome X Contains a pyruvate dehydrogenase kinase, isoenzyme 1 (PDK1) pseudogene, complete sequence Length = 174181 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 gaatgcaactggatgcctt 117 ||||||||||||||||||| Sbjct: 145950 gaatgcaactggatgcctt 145932
>emb|AL162412.11| Human DNA sequence from clone RP11-109D9 on chromosome 9 Contains the 5' end of the APBA1 gene for myloid beta (A4) precursor protein-binding, family A, member 1 (X11), two novel genes, the 5' end of a novel gene possible ortholog of mouse RIKEN cDNA 1700028P14 gene and two CpG islands, complete sequence Length = 189277 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 acaaatacaatacaatata 31 ||||||||||||||||||| Sbjct: 121917 acaaatacaatacaatata 121935
>emb|AL137245.11| Human DNA sequence from clone RP11-196I2 on chromosome 13 Contains a novel gene, complete sequence Length = 146994 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 118 attctgtagatagatagat 136 ||||||||||||||||||| Sbjct: 115461 attctgtagatagatagat 115479
>emb|AL121962.11|HSJ136A11 Human DNA sequence from clone RP1-136A11 on chromosome 6q13-14.3, complete sequence Length = 90050 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 96 tcagaatgcaactggatgc 114 ||||||||||||||||||| Sbjct: 18304 tcagaatgcaactggatgc 18286
>emb|BX649246.9| Zebrafish DNA sequence from clone DKEY-123M8 in linkage group 7, complete sequence Length = 175267 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 115 cttattctgtagatagata 133 ||||||||||||||||||| Sbjct: 7442 cttattctgtagatagata 7460
>emb|Z86069.1|CQB2A2IR C.quinquefasciatus b2 esterase and a2 esterase genes and iutergenic spacer Length = 7461 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 114 ccttattctgtagatagat 132 ||||||||||||||||||| Sbjct: 4485 ccttattctgtagatagat 4503
>ref|XM_695768.1| PREDICTED: Danio rerio similar to transgelin 3 (LOC572095), mRNA Length = 462 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 tgatccagtgtggagatga 90 ||||||||||||||||||| Sbjct: 104 tgatccagtgtggagatga 122
>gb|AC152929.2| Xenopus tropicalis clone ISB1-11B9, complete sequence Length = 68368 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 ctgtagatagatagatgcc 139 ||||||||||||||||||| Sbjct: 13375 ctgtagatagatagatgcc 13393
>gb|AC104592.6| Homo sapiens chromosome 8, clone RP11-714N16, complete sequence Length = 154338 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 acaaatacaatacaatata 31 ||||||||||||||||||| Sbjct: 55647 acaaatacaatacaatata 55629
>gb|AC104763.12| Homo sapiens chromosome 17, clone RP11-3K24, complete sequence Length = 163418 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 118 attctgtagatagatagat 136 ||||||||||||||||||| Sbjct: 73810 attctgtagatagatagat 73792
>emb|BX323056.5| Zebrafish DNA sequence from clone DKEY-97O5 in linkage group 20, complete sequence Length = 134072 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 aaatacaatacaatataga 33 ||||||||||||||||||| Sbjct: 68176 aaatacaatacaatataga 68194
>gb|AE003828.4| Drosophila melanogaster chromosome 2R, section 22 of 73 of the complete sequence Length = 257907 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 ccacagggatacaagtaca 71 ||||||||||||||||||| Sbjct: 124425 ccacagggatacaagtaca 124407
>gb|AE003780.4| Drosophila melanogaster chromosome 3R, section 118 of 118 of the complete sequence Length = 256818 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 tgtgtgcggggacaaatac 20 ||||||||||||||||||| Sbjct: 84425 tgtgtgcggggacaaatac 84443
>emb|CR925799.3| Wallaby DNA sequence from clone GRWB-66O5, complete sequence Length = 165490 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 gagatgataccatcagaat 102 ||||||||||||||||||| Sbjct: 163446 gagatgataccatcagaat 163428
>dbj|AP004483.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT13O04, TM0016, complete sequence Length = 122116 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 acaaatacaatacaatata 31 ||||||||||||||||||| Sbjct: 28593 acaaatacaatacaatata 28611 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,120,030 Number of Sequences: 3902068 Number of extensions: 2120030 Number of successful extensions: 974064 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 973637 Number of HSP's gapped (non-prelim): 427 length of query: 153 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 132 effective length of database: 17,151,101,840 effective search space: 2263945442880 effective search space used: 2263945442880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)