ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl06h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.47
2dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic D... 42 0.47
3gb|AC162520.7| Mus musculus chromosome 5, clone RP24-118C7, comp... 40 1.9
4gb|AC138395.8| Mus musculus chromosome 3, clone RP24-128I24, com... 40 1.9
5gb|AC009395.7| Drosophila melanogaster clone BACR01D01, complete... 40 1.9
6gb|AC009736.10| Drosophila melanogaster clone BACR10A04, complet... 40 1.9
7emb|AL451044.7| Human DNA sequence from clone RP11-293K19 on chr... 40 1.9
8gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, com... 40 1.9
9gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 1.9
10gb|AE003722.4| Drosophila melanogaster chromosome 3R, section 60... 40 1.9
11gb|AC009343.9| Drosophila melanogaster clone BACR08L17, complete... 38 7.4
12gb|AF314745.1| Deltistes luxatus clone Dlu4303 microsatellite se... 38 7.4
13gb|AC150674.4| Bos taurus BAC CH240-443I13 (Children's Hospital... 38 7.4
14gb|AC016023.8| Drosophila melanogaster clone BACR16F16, complete... 38 7.4
15gb|AC009391.16| Drosophila melanogaster clone BACR21I23, complet... 38 7.4
16gb|BT012905.1| Lycopersicon esculentum clone 114022F, mRNA sequence 38 7.4
17gb|AC073644.10| Homo sapiens BAC clone RP11-519M4 from 7, comple... 38 7.4
18gb|AC146033.2| Pan troglodytes BAC clone RP43-14B18 from 7, comp... 38 7.4
19gb|AC092062.4| Homo sapiens BAC clone RP11-505F9 from 7, complet... 38 7.4
20gb|AC142287.1| Pan troglodytes BAC clone RP43-169H12 from 7, com... 38 7.4
21emb|AL691517.20| Human DNA sequence from clone XXyac-12DB5 on ch... 38 7.4
22emb|AL162412.11| Human DNA sequence from clone RP11-109D9 on chr... 38 7.4
23emb|AL137245.11| Human DNA sequence from clone RP11-196I2 on chr... 38 7.4
24emb|AL121962.11|HSJ136A11 Human DNA sequence from clone RP1-136A... 38 7.4
25emb|BX649246.9| Zebrafish DNA sequence from clone DKEY-123M8 in ... 38 7.4
26emb|Z86069.1|CQB2A2IR C.quinquefasciatus b2 esterase and a2 este... 38 7.4
27ref|XM_695768.1| PREDICTED: Danio rerio similar to transgelin 3 ... 38 7.4
28gb|AC152929.2| Xenopus tropicalis clone ISB1-11B9, complete sequ... 38 7.4
29gb|AC104592.6| Homo sapiens chromosome 8, clone RP11-714N16, com... 38 7.4
30gb|AC104763.12| Homo sapiens chromosome 17, clone RP11-3K24, com... 38 7.4
31emb|BX323056.5| Zebrafish DNA sequence from clone DKEY-97O5 in l... 38 7.4
32gb|AE003828.4| Drosophila melanogaster chromosome 2R, section 22... 38 7.4
33gb|AE003780.4| Drosophila melanogaster chromosome 3R, section 11... 38 7.4
34emb|CR925799.3| Wallaby DNA sequence from clone GRWB-66O5, compl... 38 7.4
35dbj|AP004483.1| Lotus japonicus genomic DNA, chromosome 1, clone... 38 7.4

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 43       caaatatgcgccacagggatacaagtaca 71
                ||||| || ||||||||||||||||||||
Sbjct: 21893967 caaatttgtgccacagggatacaagtaca 21893939



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>dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1114B07
          Length = 148060

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 43     caaatatgcgccacagggatacaagtaca 71
              ||||| || ||||||||||||||||||||
Sbjct: 123260 caaatttgtgccacagggatacaagtaca 123232



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>gb|AC162520.7| Mus musculus chromosome 5, clone RP24-118C7, complete sequence
          Length = 187196

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     acaaatacaatacaatatag 32
              ||||||||||||||||||||
Sbjct: 108866 acaaatacaatacaatatag 108847



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>gb|AC138395.8| Mus musculus chromosome 3, clone RP24-128I24, complete sequence
          Length = 171020

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    tattctgtagatagatagat 136
              ||||||||||||||||||||
Sbjct: 138337 tattctgtagatagatagat 138356



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>gb|AC009395.7| Drosophila melanogaster clone BACR01D01, complete sequence
          Length = 189116

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 13    acaaatacaatacaatatagataa 36
             |||||||||||| |||||||||||
Sbjct: 23926 acaaatacaatataatatagataa 23903



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>gb|AC009736.10| Drosophila melanogaster clone BACR10A04, complete sequence
          Length = 165489

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 13     acaaatacaatacaatatagataa 36
              |||||||||||| |||||||||||
Sbjct: 100821 acaaatacaatataatatagataa 100798



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>emb|AL451044.7| Human DNA sequence from clone RP11-293K19 on chromosome 1 Contains part
             of the DOCK7 gene for dedicator of cytokinesis 7, complete
             sequence
          Length = 127370

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    acaaatacaatacaatatag 32
             ||||||||||||||||||||
Sbjct: 86414 acaaatacaatacaatatag 86395



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>gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, complete sequence
          Length = 153684

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   tattctgtagatagatagat 136
             ||||||||||||||||||||
Sbjct: 78720 tattctgtagatagatagat 78739



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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 84      gagatgataccatcagaatg 103
               ||||||||||||||||||||
Sbjct: 1860163 gagatgataccatcagaatg 1860144



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>gb|AE003722.4| Drosophila melanogaster chromosome 3R, section 60 of 118 of the complete
              sequence
          Length = 221164

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 13     acaaatacaatacaatatagataa 36
              |||||||||||| |||||||||||
Sbjct: 168059 acaaatacaatataatatagataa 168036



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>gb|AC009343.9| Drosophila melanogaster clone BACR08L17, complete sequence
          Length = 182492

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 53     ccacagggatacaagtaca 71
              |||||||||||||||||||
Sbjct: 132511 ccacagggatacaagtaca 132493



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>gb|AF314745.1| Deltistes luxatus clone Dlu4303 microsatellite sequence
          Length = 433

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 124 tagatagatagatgccgac 142
           |||||||||||||||||||
Sbjct: 278 tagatagatagatgccgac 296



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>gb|AC150674.4| Bos taurus  BAC CH240-443I13 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 194860

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 95     atcagaatgcaactggatg 113
              |||||||||||||||||||
Sbjct: 144904 atcagaatgcaactggatg 144922



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>gb|AC016023.8| Drosophila melanogaster clone BACR16F16, complete sequence
          Length = 186404

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      tgtgtgcggggacaaatac 20
              |||||||||||||||||||
Sbjct: 152066 tgtgtgcggggacaaatac 152084



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>gb|AC009391.16| Drosophila melanogaster clone BACR21I23, complete sequence
          Length = 189254

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     tgtgtgcggggacaaatac 20
             |||||||||||||||||||
Sbjct: 16861 tgtgtgcggggacaaatac 16879



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>gb|BT012905.1| Lycopersicon esculentum clone 114022F, mRNA sequence
          Length = 2090

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 101 atgcaactggatgccttat 119
           |||||||||||||||||||
Sbjct: 227 atgcaactggatgccttat 245



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>gb|AC073644.10| Homo sapiens BAC clone RP11-519M4 from 7, complete sequence
          Length = 174359

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 73     gatccagtgtggagatgat 91
              |||||||||||||||||||
Sbjct: 113022 gatccagtgtggagatgat 113004



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>gb|AC146033.2| Pan troglodytes BAC clone RP43-14B18 from 7, complete sequence
          Length = 170094

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 14    caaatacaatacaatatagataa 36
             ||||||||||||||||| |||||
Sbjct: 32265 caaatacaatacaatattgataa 32287



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>gb|AC092062.4| Homo sapiens BAC clone RP11-505F9 from 7, complete sequence
          Length = 14200

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 114  ccttattctgtagatagatagat 136
            ||||||| |||||||||||||||
Sbjct: 6914 ccttattgtgtagatagatagat 6892



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>gb|AC142287.1| Pan troglodytes BAC clone RP43-169H12 from 7, complete sequence
          Length = 134577

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 14    caaatacaatacaatatagataa 36
             ||||||||||||||||| |||||
Sbjct: 19150 caaatacaatacaatattgataa 19128



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>emb|AL691517.20| Human DNA sequence from clone XXyac-12DB5 on chromosome X Contains a
              pyruvate dehydrogenase kinase, isoenzyme 1 (PDK1)
              pseudogene, complete sequence
          Length = 174181

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 99     gaatgcaactggatgcctt 117
              |||||||||||||||||||
Sbjct: 145950 gaatgcaactggatgcctt 145932



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>emb|AL162412.11| Human DNA sequence from clone RP11-109D9 on chromosome 9 Contains the 5'
              end of the APBA1 gene for myloid beta (A4) precursor
              protein-binding, family A, member 1 (X11), two novel genes,
              the 5' end of a novel gene possible ortholog of mouse RIKEN
              cDNA 1700028P14 gene and two CpG islands, complete sequence
          Length = 189277

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 13     acaaatacaatacaatata 31
              |||||||||||||||||||
Sbjct: 121917 acaaatacaatacaatata 121935



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>emb|AL137245.11| Human DNA sequence from clone RP11-196I2 on chromosome 13 Contains a
              novel gene, complete sequence
          Length = 146994

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 118    attctgtagatagatagat 136
              |||||||||||||||||||
Sbjct: 115461 attctgtagatagatagat 115479



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>emb|AL121962.11|HSJ136A11 Human DNA sequence from clone RP1-136A11 on chromosome 6q13-14.3,
             complete sequence
          Length = 90050

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 96    tcagaatgcaactggatgc 114
             |||||||||||||||||||
Sbjct: 18304 tcagaatgcaactggatgc 18286



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>emb|BX649246.9| Zebrafish DNA sequence from clone DKEY-123M8 in linkage group 7,
            complete sequence
          Length = 175267

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 115  cttattctgtagatagata 133
            |||||||||||||||||||
Sbjct: 7442 cttattctgtagatagata 7460



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>emb|Z86069.1|CQB2A2IR C.quinquefasciatus b2 esterase and a2 esterase genes and iutergenic
            spacer
          Length = 7461

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 114  ccttattctgtagatagat 132
            |||||||||||||||||||
Sbjct: 4485 ccttattctgtagatagat 4503



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>ref|XM_695768.1| PREDICTED: Danio rerio similar to transgelin 3 (LOC572095), mRNA
          Length = 462

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 72  tgatccagtgtggagatga 90
           |||||||||||||||||||
Sbjct: 104 tgatccagtgtggagatga 122



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>gb|AC152929.2| Xenopus tropicalis clone ISB1-11B9, complete sequence
          Length = 68368

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 121   ctgtagatagatagatgcc 139
             |||||||||||||||||||
Sbjct: 13375 ctgtagatagatagatgcc 13393



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>gb|AC104592.6| Homo sapiens chromosome 8, clone RP11-714N16, complete sequence
          Length = 154338

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    acaaatacaatacaatata 31
             |||||||||||||||||||
Sbjct: 55647 acaaatacaatacaatata 55629



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>gb|AC104763.12| Homo sapiens chromosome 17, clone RP11-3K24, complete sequence
          Length = 163418

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 118   attctgtagatagatagat 136
             |||||||||||||||||||
Sbjct: 73810 attctgtagatagatagat 73792



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>emb|BX323056.5| Zebrafish DNA sequence from clone DKEY-97O5 in linkage group 20,
             complete sequence
          Length = 134072

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    aaatacaatacaatataga 33
             |||||||||||||||||||
Sbjct: 68176 aaatacaatacaatataga 68194



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>gb|AE003828.4| Drosophila melanogaster chromosome 2R, section 22 of 73 of the complete
              sequence
          Length = 257907

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 53     ccacagggatacaagtaca 71
              |||||||||||||||||||
Sbjct: 124425 ccacagggatacaagtaca 124407



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>gb|AE003780.4| Drosophila melanogaster chromosome 3R, section 118 of 118 of the
             complete sequence
          Length = 256818

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     tgtgtgcggggacaaatac 20
             |||||||||||||||||||
Sbjct: 84425 tgtgtgcggggacaaatac 84443



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>emb|CR925799.3| Wallaby DNA sequence from clone GRWB-66O5, complete sequence
          Length = 165490

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 84     gagatgataccatcagaat 102
              |||||||||||||||||||
Sbjct: 163446 gagatgataccatcagaat 163428



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>dbj|AP004483.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT13O04, TM0016,
             complete sequence
          Length = 122116

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    acaaatacaatacaatata 31
             |||||||||||||||||||
Sbjct: 28593 acaaatacaatacaatata 28611


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,120,030
Number of Sequences: 3902068
Number of extensions: 2120030
Number of successful extensions: 974064
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 973637
Number of HSP's gapped (non-prelim): 427
length of query: 153
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 132
effective length of database: 17,151,101,840
effective search space: 2263945442880
effective search space used: 2263945442880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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