ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl06h03 |
|---|---|
| Clone Library Name | barley_pub |
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) (High pigmentation protein 1) Length = 1090 Score = 80.1 bits (196), Expect = 1e-15 Identities = 37/47 (78%), Positives = 45/47 (95%) Frame = -2 Query: 309 EGRNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 169 + +NFLDGDLIESFLDL+R++MEE++KAM+VPVEEL KRVEELTRLH Sbjct: 1044 DAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1090
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) Length = 1095 Score = 80.1 bits (196), Expect = 1e-15 Identities = 37/47 (78%), Positives = 45/47 (95%) Frame = -2 Query: 309 EGRNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 169 + +NFLDGDLIESFLDL+R++MEE++KAM+VPVEEL KRVEELTRLH Sbjct: 1049 DAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1095
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 77.0 bits (188), Expect = 1e-14 Identities = 37/47 (78%), Positives = 43/47 (91%) Frame = -2 Query: 309 EGRNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 169 E RNFLDGDLIESFLDL+R+KME+++K+M V VEEL KRVEELTRLH Sbjct: 1042 EARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1088
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 72.8 bits (177), Expect = 2e-13 Identities = 35/47 (74%), Positives = 40/47 (85%) Frame = -2 Query: 309 EGRNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 169 E + +LDGDLIESFLDL+R KMEE++K M V VEEL KRVEELTRLH Sbjct: 1042 EAKGYLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKRVEELTRLH 1088
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 46.6 bits (109), Expect = 2e-05 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 10/53 (18%) Frame = -2 Query: 297 FLDGDLIESFLDLNRSKMEEVAKAM----------AVPVEELSKRVEELTRLH 169 F+DGDLIESFLD++R KM+EV + ++L K VEELTR+H Sbjct: 1088 FIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 46.6 bits (109), Expect = 2e-05 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 10/53 (18%) Frame = -2 Query: 297 FLDGDLIESFLDLNRSKMEEVAKAM----------AVPVEELSKRVEELTRLH 169 F+DGDLIESFLD++R KM+EV + ++L K VEELTR+H Sbjct: 1088 FIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1| Length = 1219 Score = 32.0 bits (71), Expect = 0.41 Identities = 13/41 (31%), Positives = 27/41 (65%) Frame = -2 Query: 303 RNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 181 +N +DGDL+E FL+ + S E+++ + V ++ K++ +L Sbjct: 1173 KNVIDGDLLERFLEFDISLKIEISRKLNKSVNDIEKKLIDL 1213
>RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing and ER to Golgi| transport factor 1) (Spliceosome-associated protein 130) Length = 1361 Score = 31.6 bits (70), Expect = 0.53 Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Frame = -2 Query: 303 RNFLDGDLIESFLDLNRSKMEEVAKAM-AVPVEELSKRVEEL 181 R +DGDL E+FL L+ ++ E +AK + +V VE++ + + E+ Sbjct: 1315 RKVIDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINEV 1356
>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1| Length = 1256 Score = 31.6 bits (70), Expect = 0.53 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = -2 Query: 303 RNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 181 +N +DGDLIE F +L++S + + E+ K++ E+ Sbjct: 1210 KNVMDGDLIERFYELSQSMKIRIGTELNRTPREIEKKISEM 1250
>IFNG_SIGHI (Q9QXX2) Interferon gamma precursor (IFN-gamma)| Length = 170 Score = 30.4 bits (67), Expect = 1.2 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Frame = -2 Query: 309 EGRNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEEL 181 E N + DLI +F + +R KM++ K +PV +L K V EL Sbjct: 88 ESINTIRADLIVNFFNNSREKMDDFIKLTTIPVNDLQVQRKAVNEL 133
>CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity factor, 160 kDa| subunit (CPSF 160 kDa subunit) (CPSF-160) (dCPSF) Length = 1455 Score = 30.4 bits (67), Expect = 1.2 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = -2 Query: 303 RNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRL 172 R +DGDLI S+ + S+ EVAK + EE+ + E+ RL Sbjct: 1408 RCIIDGDLIWSYRLMANSERNEVAKKIGTRTEEILGDLLEIERL 1451
>APOL4_HUMAN (Q9BPW4) Apolipoprotein-L4 precursor (Apolipoprotein L-IV)| (ApoL-IV) Length = 351 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/39 (30%), Positives = 24/39 (61%) Frame = -2 Query: 285 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 169 +L++ LDL++ E A+++ +EL + + ELT +H Sbjct: 307 NLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIH 345
>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) Length = 1072 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%) Frame = -2 Query: 300 NFLDGDLIESFLDLNRSKMEEVAKA------MAVPVEELSKRVEELTRLH 169 + +DG LIES L L + E+ + + V++L +E L +LH Sbjct: 1022 DLIDGSLIESILGLREPILNEIVNGGHEGTKLDISVQDLKSIIENLEKLH 1071
>YO053_YEAST (Q08223) Uncharacterized protein YOL053W| Length = 395 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +2 Query: 11 FCTDKVTLLSKSKTEKRNVATNTCRGSFSGRQRFTTQRKR 130 +C ++ L+KS T KRN T + R G+ FTT ++ Sbjct: 79 YCHVRLNTLNKSITTKRNSLTESKRHVHDGKHFFTTPHQQ 118
>G168_PARPR (P17053) G surface protein, allelic form 168 precursor| Length = 2704 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +2 Query: 68 ATNTCRGSFSGRQRFTTQRKRTNKTGCTRHGAT*C 172 A TC + G +++ K GCT +GAT C Sbjct: 1637 AATTCDAVYLGTGNYSSANCNEMKAGCTNNGATAC 1671
>MODA_MYCTU (P0A5Y0) Molybdate-binding protein precursor| Length = 261 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 279 IESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 169 I SF DL R + V +VP ++R+E+ T +H Sbjct: 133 IRSFADLTRPGLNVVVCQPSVPCGSATRRIEDATGIH 169
>MODA_MYCBO (P0A5Y1) Molybdate-binding protein precursor| Length = 261 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 279 IESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 169 I SF DL R + V +VP ++R+E+ T +H Sbjct: 133 IRSFADLTRPGLNVVVCQPSVPCGSATRRIEDATGIH 169
>MPPA1_ARATH (Q9ZU25) Probable mitochondrial-processing peptidase alpha subunit| 1, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 1) Length = 503 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = -2 Query: 294 LDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELT 178 L+G+L+E F+ N + V A V EEL K E LT Sbjct: 240 LNGELLEEFMTENFTAARMVLAASGVEHEELLKVAEPLT 278
>Y429_METAC (Q8TTK2) UPF0272 protein MA0429| Length = 396 Score = 27.7 bits (60), Expect = 7.7 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 243 EEVAKAMAVPVEELSKRVEELTR 175 +++AKA +PV E+ +R EE+ R Sbjct: 370 KKIAKASGIPVREIMRRTEEVAR 392
>CCNT1_HORSE (Q9XT26) Cyclin-T1 (Cyclin-T) (CycT1)| Length = 727 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = -2 Query: 282 LIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRVHP 142 +I+SF +R+ + A +A VEE K++E + + VA +HP Sbjct: 71 MIQSFTQFHRNSVAPAALFLAAKVEEQPKKLEHVIK---VAHACLHP 114
>IFNG_MOSBE (Q647G2) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -2 Query: 285 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 172 D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 99 DMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139
>IFNG_CAPHI (P79154) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -2 Query: 285 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 172 D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 99 DMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139
>IFNG_BUBBU (Q8SPW9) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -2 Query: 285 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 172 D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 99 DMFQKFLNGSSEKLEDFKKLIQIPVDDLQTQRKAINELIKV 139
>IFNG_BOVIN (P07353) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -2 Query: 285 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 172 D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 99 DMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139
>ERG28_ARATH (O80594) Probable ergosterol biosynthetic protein 28| Length = 110 Score = 27.3 bits (59), Expect = 10.0 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -1 Query: 151 CTSCFICSFSLCCKPL 104 CT CF+C+F+L KPL Sbjct: 55 CTLCFLCAFNLENKPL 70
>CCNT1_MOUSE (Q9QWV9) Cyclin-T1 (Cyclin-T) (CycT1)| Length = 724 Score = 27.3 bits (59), Expect = 10.0 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = -2 Query: 282 LIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRVHP 142 +I+SF +R M A +A VEE K++E + + VA +HP Sbjct: 71 MIQSFTQFHRYSMAPAALFLAAKVEEQPKKLEHVIK---VAHTCLHP 114
>VPU_SIVCZ (P17286) VPU protein (U ORF protein)| Length = 88 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/47 (27%), Positives = 26/47 (55%) Frame = +3 Query: 12 FAQIKLHSYQSRKQRNGMLLQTLAEDHSQAANGLQHSENEQIKQDVH 152 + + K H ++ +R ++L+ AED +NG E E+++Q +H Sbjct: 30 YRRYKRHRLETEIERLNLILRERAEDSGNESNG---EEEERLEQLIH 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,681,683 Number of Sequences: 219361 Number of extensions: 505730 Number of successful extensions: 1845 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 1809 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1841 length of database: 80,573,946 effective HSP length: 78 effective length of database: 63,463,788 effective search space used: 1523130912 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
